>RPOA_ANAMM (Q5PA81) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 366

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 158 LLPFLGTERVEGRSWRAMDDGELGLSLASTALQEFNELEL 39
           L  F+G+E VEG S + +D  E  L      L++ +ELEL
Sbjct: 253 LQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELEL 292

>ALGE_PSEAE (P18895) Alginate production protein algE precursor|
          Length = 490

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 116 WRAMDDGELGLSLASTALQEFNE---LELECTVLLYFTSGL 3
           WR  DD ++G S  + ALQ   +    EL+  V  YF  GL
Sbjct: 402 WRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGL 442


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.305    0.127    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,961,664
Number of Sequences: 219361
Number of extensions: 205253
Number of successful extensions: 312
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 80,573,946
effective HSP length: 31
effective length of database: 73,773,755
effective search space used: 1770570120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)