ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet81e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome... 96 5e-17
2gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome... 96 5e-17
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 96 5e-17
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 96 5e-17
5gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome... 86 5e-14
6gb|AY107519.1| Zea mays PCO078033 mRNA sequence 84 2e-13
7gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P1... 82 7e-13
8dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clon... 82 7e-13
9dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 2e-10
10dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 2e-10
11gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 70 3e-09
12gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 70 3e-09
13dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 3e-09
14ref|NM_191262.1| Oryza sativa (japonica cultivar-group), predic... 46 0.041
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.041
16dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.041
17dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.041
18gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 2.5
19dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 2.5
20gb|AC123060.4| Mus musculus chromosome 6 clone RP23-214M22, comp... 38 10.0
21gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 38 10.0
22gb|BC034866.1| Mus musculus telomeric repeat binding factor 1, m... 38 10.0
23gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, com... 38 10.0
24gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 38 10.0
25gb|AC109269.17| Mus musculus chromosome 1, clone RP23-325F17, co... 38 10.0
26ref|XM_755832.1| Ustilago maydis 521 hypothetical protein (UM047... 38 10.0
27gb|AC102637.7| Mus musculus chromosome 6, clone RP23-216B9, comp... 38 10.0
28emb|AL355476.12| Human DNA sequence from clone RP11-517O1 on chr... 38 10.0
29gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 38 10.0
30dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 38 10.0
31dbj|AK132022.1| Mus musculus 10, 11 days embryo whole body cDNA,... 38 10.0
32gb|U65586.1|MMU65586 Mus musculus telomeric protein mTRF1 mRNA, ... 38 10.0
33dbj|AK036615.1| Mus musculus adult male bone cDNA, RIKEN full-le... 38 10.0
34dbj|AK050066.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 38 10.0
35dbj|AK021235.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 38 10.0
36gb|AF518766.1| Mus spretus telomere double-strand DNA-binding pr... 38 10.0
37dbj|AP004717.1| Gallus gallus genomic DNA, chromosome 5, clone:1... 38 10.0
38gb|AC159218.3| Pan troglodytes BAC clone CH251-59O2 from chromos... 38 10.0
39dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 38 10.0
40dbj|AB109563.1| Mus musculus mRNA for telomeric repeat binding f... 38 10.0
41gb|AY103669.1| Zea mays PCO073521 mRNA sequence 38 10.0
42gb|AE015924.1| Porphyromonas gingivalis W83, complete genome 38 10.0
43gb|AF033496.1|AF033496 Zea mays herbicide safener binding protei... 38 10.0
44ref|NM_009352.2| Mus musculus telomeric repeat binding factor 1 ... 38 10.0
45gb|AC160647.1| Gallus gallus BAC clone CH261-14N23 from chromoso... 38 10.0
46gb|AC159011.2| Gallus gallus BAC clone CH261-107A24 from chromos... 38 10.0
47gb|AC131660.4| Mus musculus BAC clone RP23-241P13 from 9, comple... 38 10.0
48gb|U70994.1|MMU70994 Mus musculus telomeric protein mTRF1 gene, ... 38 10.0
49emb|X17024.1|LM5KDINS Locusta migratoria mRNA for 5-kDa protein ... 38 10.0
50emb|Z29963.1|LMGIRP2 L.migratoria gene for insulin-related pepti... 38 10.0 
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0097K08 map C827S, complete sequence
          Length = 137870

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 78/88 (88%)
 Strand = Plus / Plus

                                                                         
Query: 103   cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
             ||||||||||| |||||||| || || ||| ||||||| |||||||||||| ||| ||||
Sbjct: 43542 cccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcctac 43601

                                         
Query: 163   ctcacgcccatgtcgctccgctgcgccg 190
             |||||| ||||| |||||||||||||||
Sbjct: 43602 ctcacggccatggcgctccgctgcgccg 43629
to top
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0026P08 map near C827S, complete sequence
          Length = 148676

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                         
Query: 103   cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
             ||||||||||| |||||||| || || ||| ||||||| |||||||||||| ||| ||||
Sbjct: 52233 cccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcctac 52174

                                         
Query: 163   ctcacgcccatgtcgctccgctgcgccg 190
             |||||| ||||| |||||||||||||||
Sbjct: 52173 ctcacggccatggcgctccgctgcgccg 52146
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                           
Query: 103     cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
               ||||||||||| |||||||| || || ||| ||||||| |||||||||||| ||| ||||
Sbjct: 7139013 cccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcctac 7138954

                                           
Query: 163     ctcacgcccatgtcgctccgctgcgccg 190
               |||||| ||||| |||||||||||||||
Sbjct: 7138953 ctcacggccatggcgctccgctgcgccg 7138926



 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                            
Query: 134      ccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgctgcgccgtcg 193
                |||||||||||||||||||||||| |||||||||| |||||   ||||||||||||||||
Sbjct: 11550532 ccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgccgtcg 11550473

                       
Query: 194      acctcgg 200
                | |||||
Sbjct: 11550472 agctcgg 11550466



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 124      caggcgcagtccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgc 183
                ||||||||| || ||||||||||||||||||||| |||||||||  ||||| ||||||| 
Sbjct: 11482291 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 11482350

                         
Query: 184      tgcgccgtc 192
                |||||||||
Sbjct: 11482351 tgcgccgtc 11482359



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                            
Query: 103      cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
                ||||| ||||| |||||||| || |||||| |||| ||||||||||||||||||| ||||
Sbjct: 11494867 cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 11494808

                     
Query: 163      ctcac 167
                |||||
Sbjct: 11494807 ctcac 11494803



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                            
Query: 106      accgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165
                |||||||  |||||||| || |||||| |||||||||||||||||||||||| || | ||
Sbjct: 11331664 accgacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtc 11331605

                                           
Query: 166      acgcccatgtcgctccgctgcgccgtc 192
                ||| ||||| || |||  |||||||||
Sbjct: 11331604 acgtccatggcgttccagtgcgccgtc 11331578



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                            
Query: 95       tgttcgtccccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcc 154
                |||| ||||| |||||||  ||| |||| ||  ||||| |||| ||||||||||||| ||
Sbjct: 11303067 tgttggtcccgaccgacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccc 11303008

                                                              
Query: 155      tctgctacctcacgcccatgtcgctccgctgcgccgtcgacctcgg 200
                ||| |||||||||  ||||| | ||||| ||||||||| |||||||
Sbjct: 11303007 tctcctacctcacctccatgactctccggtgcgccgtccacctcgg 11302962



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 114      ggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctacctcacg 168
                ||||||||| || || ||| |||| || ||||||||||||||||||||| |||||
Sbjct: 11439602 ggagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacg 11439548



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                            
Query: 106      accgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165
                |||||||  |||||||| || |||||| ||||| ||| |||||||||||||| || | ||
Sbjct: 11355312 accgacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtc 11355253

                         
Query: 166      acgcccatg 174
                ||| |||||
Sbjct: 11355252 acgtccatg 11355244
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 95.6 bits (48), Expect = 5e-17
 Identities = 78/88 (88%)
 Strand = Plus / Minus

                                                                           
Query: 103     cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
               ||||||||||| |||||||| || || ||| ||||||| |||||||||||| ||| ||||
Sbjct: 7204984 cccaccgacgctgagctgctgcaagcacaggccgacctatggcgccacagcttctcctac 7204925

                                           
Query: 163     ctcacgcccatgtcgctccgctgcgccg 190
               |||||| ||||| |||||||||||||||
Sbjct: 7204924 ctcacggccatggcgctccgctgcgccg 7204897



 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                            
Query: 134      ccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgctgcgccgtcg 193
                |||||||||||||||||||||||| |||||||||| |||||   ||||||||||||||||
Sbjct: 11629721 ccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgccgtcg 11629662

                       
Query: 194      acctcgg 200
                | |||||
Sbjct: 11629661 agctcgg 11629655



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                            
Query: 124      caggcgcagtccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgc 183
                ||||||||| || ||||||||||||||||||||| |||||||||  ||||| ||||||| 
Sbjct: 11561480 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 11561539

                         
Query: 184      tgcgccgtc 192
                |||||||||
Sbjct: 11561540 tgcgccgtc 11561548



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                            
Query: 103      cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
                ||||| ||||| |||||||| || |||||| |||| ||||||||||||||||||| ||||
Sbjct: 11574056 cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 11573997

                     
Query: 163      ctcac 167
                |||||
Sbjct: 11573996 ctcac 11573992



 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                            
Query: 106      accgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165
                |||||||  |||||||| || |||||| |||||||||||||||||||||||| || | ||
Sbjct: 11410853 accgacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtc 11410794

                                           
Query: 166      acgcccatgtcgctccgctgcgccgtc 192
                ||| ||||| || |||  |||||||||
Sbjct: 11410793 acgtccatggcgttccagtgcgccgtc 11410767



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                            
Query: 95       tgttcgtccccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcc 154
                |||| ||||| |||||||  ||| |||| ||  ||||| |||| ||||||||||||| ||
Sbjct: 11382256 tgttggtcccgaccgacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccc 11382197

                                                              
Query: 155      tctgctacctcacgcccatgtcgctccgctgcgccgtcgacctcgg 200
                ||| |||||||||  ||||| | ||||| ||||||||| |||||||
Sbjct: 11382196 tctcctacctcacctccatgactctccggtgcgccgtccacctcgg 11382151



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 114      ggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctacctcacg 168
                ||||||||| || || ||| |||| || ||||||||||||||||||||| |||||
Sbjct: 11518791 ggagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacg 11518737



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                            
Query: 106      accgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165
                |||||||  |||||||| || |||||| ||||| ||| |||||||||||||| || | ||
Sbjct: 11434501 accgacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtc 11434442

                         
Query: 166      acgcccatg 174
                ||| |||||
Sbjct: 11434441 acgtccatg 11434433
to top
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0005P21, complete sequence
          Length = 147381

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 61/67 (91%)
 Strand = Plus / Plus

                                                                         
Query: 134   ccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgctgcgccgtcg 193
             |||||||||||||||||||||||| |||||||||| |||||   ||||||||||||||||
Sbjct: 63256 ccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgccgtcg 63315

                    
Query: 194   acctcgg 200
             | |||||
Sbjct: 63316 agctcgg 63322



 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                          
Query: 124    caggcgcagtccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgc 183
              ||||||||| || ||||||||||||||||||||| |||||||||  ||||| ||||||| 
Sbjct: 131497 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 131438

                       
Query: 184    tgcgccgtc 192
              |||||||||
Sbjct: 131437 tgcgccgtc 131429



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                          
Query: 103    cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
              ||||| ||||| |||||||| || |||||| |||| ||||||||||||||||||| ||||
Sbjct: 118921 cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 118980

                   
Query: 163    ctcac 167
              |||||
Sbjct: 118981 ctcac 118985
to top
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence
          Length = 1299

 Score = 83.8 bits (42), Expect = 2e-13
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                       
Query: 103 cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
           ||||| ||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct: 63  cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 122

             
Query: 163 ct 164
           ||
Sbjct: 123 ct 124
to top
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence
          Length = 128418

 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 62/69 (89%)
 Strand = Plus / Minus

                                                                         
Query: 124   caggcgcagtccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgc 183
             ||||||||| || ||||||||||||||||||||| |||||||||  ||||| ||||||| 
Sbjct: 17246 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 17187

                      
Query: 184   tgcgccgtc 192
             |||||||||
Sbjct: 17186 tgcgccgtc 17178



 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                        
Query: 103  cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
            ||||| ||||| |||||||| || |||||| |||| ||||||||||||||||||| ||||
Sbjct: 4670 cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 4729

                 
Query: 163  ctcac 167
            |||||
Sbjct: 4730 ctcac 4734



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 114   ggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctacctcacg 168
             ||||||||| || || ||| |||| || ||||||||||||||||||||| |||||
Sbjct: 59935 ggagctgctgcaagcacaggccgatctatggcgccacagcctctgctacatcacg 59989
to top
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full
           insert sequence
          Length = 1300

 Score = 81.8 bits (41), Expect = 7e-13
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 124 caggcgcagtccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgc 183
           ||||||||| || ||||||||||||||||||||| |||||||||  ||||| ||||||| 
Sbjct: 118 caggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccgg 177

                    
Query: 184 tgcgccgtc 192
           |||||||||
Sbjct: 178 tgcgccgtc 186
to top
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full
           insert sequence
          Length = 1362

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 103 cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
           ||||| ||||| |||||||| || |||||| |||| ||||||||||||||||||| ||||
Sbjct: 81  cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 140

                
Query: 163 ctcac 167
           |||||
Sbjct: 141 ctcac 145
to top
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full
           insert sequence
          Length = 1264

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 103 cccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctac 162
           ||||| ||||| |||||||| || |||||| |||| ||||||||||||||||||| ||||
Sbjct: 86  cccactgacgctgagctgctgcaagcgcaggccgatctgtggcgccacagcctctactac 145

                
Query: 163 ctcac 167
           |||||
Sbjct: 146 ctcac 150
to top
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05
              map C53961S, complete sequence
          Length = 175121

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 74/87 (85%)
 Strand = Plus / Minus

                                                                          
Query: 106    accgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165
              |||||||  |||||||| || |||||| |||||||||||||||||||||||| || | ||
Sbjct: 118022 accgacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtc 117963

                                         
Query: 166    acgcccatgtcgctccgctgcgccgtc 192
              ||| ||||| || |||  |||||||||
Sbjct: 117962 acgtccatggcgttccagtgcgccgtc 117936



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 88/106 (83%)
 Strand = Plus / Minus

                                                                         
Query: 95    tgttcgtccccaccgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcc 154
             |||| ||||| |||||||  ||| |||| ||  ||||| |||| ||||||||||||| ||
Sbjct: 89425 tgttggtcccgaccgacgacgagatgctgcaaacgcaggccgagctgtggcgccacaccc 89366

                                                           
Query: 155   tctgctacctcacgcccatgtcgctccgctgcgccgtcgacctcgg 200
             ||| |||||||||  ||||| | ||||| ||||||||| |||||||
Sbjct: 89365 tctcctacctcacctccatgactctccggtgcgccgtccacctcgg 89320



 Score = 50.1 bits (25), Expect = 0.003
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                          
Query: 106    accgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165
              |||||||  |||||||| || |||||| ||||| ||| |||||||||||||| || | ||
Sbjct: 141670 accgacgacgagctgctgcacgcgcaggccgacatgttgcgccacagcctctacttcgtc 141611

                       
Query: 166    acgcccatg 174
              ||| |||||
Sbjct: 141610 acgtccatg 141602
to top
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 134 ccgacctgtggcgccacagcctctgctacctcacgcccatgtcgctccgctgcgccgtc 192
           |||||||||||||||||| ||| | |||||||||| |||||  ||||||||||||||||
Sbjct: 94  ccgacctgtggcgccacaccctttactacctcacgtccatggggctccgctgcgccgtc 152
to top
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full
           insert sequence
          Length = 1262

 Score = 69.9 bits (35), Expect = 3e-09
 Identities = 74/87 (85%)
 Strand = Plus / Plus

                                                                       
Query: 106 accgacgcggagctgctccaggcgcagtccgacctgtggcgccacagcctctgctacctc 165
           |||||||  |||||||| || |||||| |||||||||||||||||||||||| || | ||
Sbjct: 83  accgacgacgagctgctgcacgcgcaggccgacctgtggcgccacagcctctacttcgtc 142

                                      
Query: 166 acgcccatgtcgctccgctgcgccgtc 192
           ||| ||||| || |||  |||||||||
Sbjct: 143 acgtccatggcgttccagtgcgccgtc 169
to top
>ref|NM_191262.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1137

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 170 ccatgtcgctccgctgcgccgtcgacctcgg 200
           ||||||| ||||||||||||||||| |||||
Sbjct: 92  ccatgtccctccgctgcgccgtcgagctcgg 122
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 170      ccatgtcgctccgctgcgccgtcgacctcgg 200
                ||||||| ||||||||||||||||| |||||
Sbjct: 31604087 ccatgtccctccgctgcgccgtcgagctcgg 31604117
to top
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0503C12
          Length = 147180

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 170   ccatgtcgctccgctgcgccgtcgacctcgg 200
             ||||||| ||||||||||||||||| |||||
Sbjct: 17819 ccatgtccctccgctgcgccgtcgagctcgg 17849
to top
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435B05
          Length = 150997

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                             
Query: 170    ccatgtcgctccgctgcgccgtcgacctcgg 200
              ||||||| ||||||||||||||||| |||||
Sbjct: 117110 ccatgtccctccgctgcgccgtcgagctcgg 117140
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 107     ccgacgcggagctgctccaggcgc 130
               |||||||||||| |||||||||||
Sbjct: 1355696 ccgacgcggagcagctccaggcgc 1355719
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 104     ccaccgacgcggagctgctc 123
               ||||||||||||||||||||
Sbjct: 4717181 ccaccgacgcggagctgctc 4717162
to top
>gb|AC123060.4| Mus musculus chromosome 6 clone RP23-214M22, complete sequence
          Length = 210248

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 148    cacagcctctgctacctca 166
              |||||||||||||||||||
Sbjct: 116525 cacagcctctgctacctca 116507
to top
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                          
Query: 77      gtcaggcggccgagaaggtgttcgtcc 103
               ||||||||||| |||||||| ||||||
Sbjct: 1403029 gtcaggcggcccagaaggtgctcgtcc 1403003
to top
>gb|BC034866.1| Mus musculus telomeric repeat binding factor 1, mRNA (cDNA clone
           MGC:41208 IMAGE:3470277), complete cds
          Length = 1679

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 cgacgcggagctgctccag 126
           |||||||||||||||||||
Sbjct: 113 cgacgcggagctgctccag 131
to top
>gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, complete sequence
          Length = 174095

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 139   ctgtggcgccacagcctct 157
             |||||||||||||||||||
Sbjct: 70070 ctgtggcgccacagcctct 70052
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 170     ccatgtcgctccgctgcgc 188
               |||||||||||||||||||
Sbjct: 4086088 ccatgtcgctccgctgcgc 4086070
to top
>gb|AC109269.17| Mus musculus chromosome 1, clone RP23-325F17, complete sequence
          Length = 219191

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 108    cgacgcggagctgctccag 126
              |||||||||||||||||||
Sbjct: 113030 cgacgcggagctgctccag 113012
to top
>ref|XM_755832.1| Ustilago maydis 521 hypothetical protein (UM04778.1) partial mRNA
          Length = 1278

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 135 cgacctgtggcgccacagc 153
           |||||||||||||||||||
Sbjct: 833 cgacctgtggcgccacagc 851
to top
>gb|AC102637.7| Mus musculus chromosome 6, clone RP23-216B9, complete sequence
          Length = 196356

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 148   cacagcctctgctacctca 166
             |||||||||||||||||||
Sbjct: 45082 cacagcctctgctacctca 45064
to top
>emb|AL355476.12| Human DNA sequence from clone RP11-517O1 on chromosome X Contains the
             3' end of the STAG2 gene for stromal antigen 2, complete
             sequence
          Length = 118234

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 148   cacagcctctgctacctca 166
             |||||||||||||||||||
Sbjct: 19510 cacagcctctgctacctca 19528
to top
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 114     ggagctgctccaggcgcag 132
               |||||||||||||||||||
Sbjct: 1579050 ggagctgctccaggcgcag 1579068
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 81      ggcggccgagaaggtgttc 99
               |||||||||||||||||||
Sbjct: 1809629 ggcggccgagaaggtgttc 1809647
to top
>dbj|AK132022.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810423G03 product:telomeric
           repeat binding factor 1, full insert sequence
          Length = 1582

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 cgacgcggagctgctccag 126
           |||||||||||||||||||
Sbjct: 108 cgacgcggagctgctccag 126
to top
>gb|U65586.1|MMU65586 Mus musculus telomeric protein mTRF1 mRNA, complete cds
          Length = 1628

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 cgacgcggagctgctccag 126
           |||||||||||||||||||
Sbjct: 105 cgacgcggagctgctccag 123
to top
>dbj|AK036615.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
           library, clone:9830141K10 product:TELOMERIC REPEAT
           BINDING FACTOR 1 homolog [Mus musculus], full insert
           sequence
          Length = 3223

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 cgacgcggagctgctccag 126
           |||||||||||||||||||
Sbjct: 126 cgacgcggagctgctccag 144
to top
>dbj|AK050066.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched
            library, clone:C730009O04 product:unclassifiable, full
            insert sequence
          Length = 1876

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 148  cacagcctctgctacctca 166
            |||||||||||||||||||
Sbjct: 1824 cacagcctctgctacctca 1842
to top
>dbj|AK021235.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:C430006O16 product:telomeric
           repeat binding factor 1, full insert sequence
          Length = 969

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 cgacgcggagctgctccag 126
           |||||||||||||||||||
Sbjct: 115 cgacgcggagctgctccag 133
to top
>gb|AF518766.1| Mus spretus telomere double-strand DNA-binding protein TRF1 mRNA,
           complete cds
          Length = 1275

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 cgacgcggagctgctccag 126
           |||||||||||||||||||
Sbjct: 93  cgacgcggagctgctccag 111
to top
>dbj|AP004717.1| Gallus gallus genomic DNA, chromosome 5, clone:161D9, complete sequence
          Length = 221022

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 147    ccacagcctctgctacctc 165
              |||||||||||||||||||
Sbjct: 166180 ccacagcctctgctacctc 166198
to top
>gb|AC159218.3| Pan troglodytes BAC clone CH251-59O2 from chromosome unknown, complete
              sequence
          Length = 178970

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 148    cacagcctctgctacctca 166
              |||||||||||||||||||
Sbjct: 158437 cacagcctctgctacctca 158455
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 112     gcggagctgctccaggcgc 130
               |||||||||||||||||||
Sbjct: 2748371 gcggagctgctccaggcgc 2748353
to top
>dbj|AB109563.1| Mus musculus mRNA for telomeric repeat binding factor 1, complete
           cds
          Length = 1628

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 cgacgcggagctgctccag 126
           |||||||||||||||||||
Sbjct: 105 cgacgcggagctgctccag 123
to top
>gb|AY103669.1| Zea mays PCO073521 mRNA sequence
          Length = 1503

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 150 cagcctctgctacctcacgcccatgtc 176
           |||||||| ||||||||||||| ||||
Sbjct: 101 cagcctctcctacctcacgcccctgtc 127
to top
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome
          Length = 2343476

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 175     tcgctccgctgcgccgtcg 193
               |||||||||||||||||||
Sbjct: 1728599 tcgctccgctgcgccgtcg 1728617
to top
>gb|AF033496.1|AF033496 Zea mays herbicide safener binding protein (SBP1) mRNA, complete
           cds
          Length = 1438

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 150 cagcctctgctacctcacgcccatgtc 176
           |||||||| ||||||||||||| ||||
Sbjct: 99  cagcctctcctacctcacgcccctgtc 125
to top
>ref|NM_009352.2| Mus musculus telomeric repeat binding factor 1 (Terf1), mRNA
          Length = 1679

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 cgacgcggagctgctccag 126
           |||||||||||||||||||
Sbjct: 113 cgacgcggagctgctccag 131
to top
>gb|AC160647.1| Gallus gallus BAC clone CH261-14N23 from chromosome unknown, complete
             sequence
          Length = 237526

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 147   ccacagcctctgctacctc 165
             |||||||||||||||||||
Sbjct: 77217 ccacagcctctgctacctc 77235
to top
>gb|AC159011.2| Gallus gallus BAC clone CH261-107A24 from chromosome unknown, complete
              sequence
          Length = 249034

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 147    ccacagcctctgctacctc 165
              |||||||||||||||||||
Sbjct: 247343 ccacagcctctgctacctc 247361
to top
>gb|AC131660.4| Mus musculus BAC clone RP23-241P13 from 9, complete sequence
          Length = 220247

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 139    ctgtggcgccacagcctct 157
              |||||||||||||||||||
Sbjct: 213948 ctgtggcgccacagcctct 213930
to top
>gb|U70994.1|MMU70994 Mus musculus telomeric protein mTRF1 gene, partial cds
          Length = 500

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 cgacgcggagctgctccag 126
           |||||||||||||||||||
Sbjct: 93  cgacgcggagctgctccag 111
to top
>emb|X17024.1|LM5KDINS Locusta migratoria mRNA for 5-kDa protein precursor flanked by 2
           members of insulin superfamily
          Length = 686

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 124 caggcgcagtccgacctgt 142
           |||||||||||||||||||
Sbjct: 84  caggcgcagtccgacctgt 102
to top
>emb|Z29963.1|LMGIRP2 L.migratoria gene for insulin-related peptide B chain
          Length = 260

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 124 caggcgcagtccgacctgt 142
           |||||||||||||||||||
Sbjct: 89  caggcgcagtccgacctgt 107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 885,824
Number of Sequences: 3902068
Number of extensions: 885824
Number of successful extensions: 62095
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61132
Number of HSP's gapped (non-prelim): 963
length of query: 200
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 178
effective length of database: 17,147,199,772
effective search space: 3052201559416
effective search space used: 3052201559416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top