>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 325

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 42/48 (87%), Positives = 43/48 (89%)
 Frame = +2

Query: 62  LSKPATLMPAKIGGRASSVRPSSHVARAFGVDAAARITCSLQSDIREV 205
           L   AT+MPAKIGGRASS RPSSHVARAFGVDA ARITCSLQSDIREV
Sbjct: 5   LQAAATVMPAKIGGRASSARPSSHVARAFGVDAGARITCSLQSDIREV 52

>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
 Frame = +2

Query: 62  LSKPATLMPAKIGGRASS-VRPSSHVARAFGVD--AAARITCSLQSDIREV 205
           L   ATL+PAK+G  A + +R +SH+++AFG D   A R+TCS+ SD+R++
Sbjct: 5   LQAAATLIPAKVGAPARTHLRSNSHLSKAFGFDNSTAGRLTCSINSDLRDI 55

>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 333

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 22/53 (41%), Positives = 38/53 (71%), Gaps = 6/53 (11%)
 Frame = +2

Query: 62  LSKPATLM-PAKIGGRAS----SVRPSSHVARAFGVD-AAARITCSLQSDIRE 202
           L   ATLM P K+GG ++     +R S  V++AFG++ +A+R++CSLQ+D+++
Sbjct: 5   LQAAATLMQPTKVGGVSARNNLQLRSSQSVSKAFGLEPSASRLSCSLQTDLKD 57

>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
 Frame = +2

Query: 62  LSKPATLM-PAKIGGRAS-SVRPSSHVARAFGVD-AAARITCSLQSDIREV 205
           L   ATLM P K+G R +  +R +  V++AFGV+  + R+TCSLQ++I+E+
Sbjct: 5   LQAAATLMQPTKVGVRNNLQLRSAQSVSKAFGVEQGSGRLTCSLQTEIKEL 55

>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 23/54 (42%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
 Frame = +2

Query: 62  LSKPATLM-PAKIGGRAS----SVRPSSHVARAFGVD-AAARITCSLQSDIREV 205
           L   ATLM P K+G   +     +R +  V++AFGV+ AAAR+TCSLQ++++++
Sbjct: 5   LQAAATLMQPTKVGVAPARNNLQLRSAQSVSKAFGVEPAAARLTCSLQTELKDL 58

>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 329

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
 Frame = +2

Query: 62  LSKPATLM-PAKIGGRASSVRPSSHVARAFGVDA-AARITCSLQSDIREV 205
           L   ATLM P K+      ++ +  V++AFG++   A++TCSLQSD +E+
Sbjct: 5   LQAAATLMQPTKLRSNTLQLKSNQSVSKAFGLEHYGAKVTCSLQSDFKEL 54

>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 331

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
 Frame = +2

Query: 80  LMPAKIGGRASS---VRPSSHVARAFGVDAA-ARITCSLQSDIRE 202
           L PAKI    S    +R +  V ++FG+D++ AR+TCSL SD+++
Sbjct: 12  LQPAKIAASPSRNVHLRSNQTVGKSFGLDSSQARLTCSLHSDLKD 56

>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor|
           (OEE1) (33 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid
           membrane protein)
          Length = 332

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 4/46 (8%)
 Frame = +2

Query: 80  LMPAKIGGRAS-SVRPSSHVARAFGVDAAA---RITCSLQSDIREV 205
           L P K+  R +  +R + +V +AFGV++A+   R++ SLQSD++E+
Sbjct: 12  LQPTKVASRNTLQLRSTQNVCKAFGVESASSGGRLSLSLQSDLKEL 57

>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast|
           precursor (OEE1) (33 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 33 kDa subunit) (33 kDa
           thylakoid membrane protein)
          Length = 332

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 13/33 (39%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = +2

Query: 107 ASSVRPSSHVARAFGVD-AAARITCSLQSDIRE 202
           +S +R +  V ++FG++ ++AR+TCS QSD ++
Sbjct: 25  SSHLRSTQAVGKSFGLETSSARLTCSFQSDFKD 57

>HA13_MOUSE (P14426) H-2 class I histocompatibility antigen, D-K alpha chain|
           precursor (H-2D(K))
          Length = 362

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 118 HGGGPAADLGRHQRGRLGETLPCWSVGLVRGKIDLT 11
           H   P A +  H R ++  TL CW++G     I LT
Sbjct: 205 HTDSPKAHVTHHPRSKVEVTLRCWALGFYPADITLT 240

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 24/50 (48%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
 Frame = -2

Query: 190 GLQGARDPGGSVDAERPGDVRRRPHGGGPAADL------GRHQRG-RLGE 62
           GL G R+  GS  A R G+ RRR H G PAA        GR  RG R GE
Sbjct: 601 GLSGTREDAGSPSARR-GEQRRRGH-GPPAAGAAQVSTRGRRARGQRTGE 648

>CAF1_EPHMU (P18856) Collagen EMF1-alpha precursor (Fibrillar collagen)|
           (Fragment)
          Length = 547

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 169 PGGSVDAERPGDVRRRPHGGGPAADLGR-HQRGRLG 65
           PG    A +PG +R +P   GP  DLGR  +RG  G
Sbjct: 54  PGPVGAAGKPGSIRGQPGPPGPPGDLGRPGERGAKG 89

>HA1K_MOUSE (P04223) H-2 class I histocompatibility antigen, K-K alpha chain|
           precursor (H-2K(K))
          Length = 369

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 121 PHGGGPAADLGRHQRGRLGETLPCWSVGLVRGKIDLT 11
           P    P A + RH R     TL CW++G     I LT
Sbjct: 201 PRTDSPKAHVTRHSRPEDKVTLRCWALGFYPADITLT 237

>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 19/39 (48%), Positives = 19/39 (48%)
 Frame = -2

Query: 181 GARDPGGSVDAERPGDVRRRPHGGGPAADLGRHQRGRLG 65
           G R PGG   A RPG    RP GGG A   G    GR G
Sbjct: 321 GGRGPGG---AGRPGGGGGRPGGGGFAGRPGGGGGGRPG 356

>MRP6_MOUSE (Q9R1S7) Multidrug resistance-associated protein 6 (ATP-binding|
           cassette sub-family C member 6)
          Length = 1498

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = -2

Query: 187 LQGARDPGGSVDAERPGDVRRRPHGGGPAADLGRHQRGRLGETLP 53
           L GAR P G+ DA    D+   P GG P     R  R R  E  P
Sbjct: 849 LDGARQPAGTHDAATSDDLGGFPGGGRPTC---RPDRPRPTEAAP 890

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
 Frame = -2

Query: 181 GARDPGGSVDAER------PGDVRRRPHGGG 107
           GAR PGG   A R      PG   RRP GGG
Sbjct: 516 GARGPGGPGGAPRGPGGRPPGGGNRRPPGGG 546

>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3|
           (Voltage-gated potassium channel subunit Kv3.3)
           (KSHIIID)
          Length = 757

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -2

Query: 178 ARDPGGSVDAERPGDVRRRPHGGGPAADLGRHQRG 74
           A  P G      PG  R  P  G PAA +GRH  G
Sbjct: 49  AASPAGPPAPRGPGGRRAEPCPGLPAAAMGRHGGG 83

>HA1D_MOUSE (P01902) H-2 class I histocompatibility antigen, K-D alpha chain|
           precursor (H-2K(D))
          Length = 368

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 106 PAADLGRHQRGRLGETLPCWSVGLVRGKIDLT 11
           P A +  H R ++  TL CW++G     I LT
Sbjct: 206 PKAHVTYHPRSQVDVTLRCWALGFYPADITLT 237

>AVEN_HUMAN (Q9NQS1) Cell death regulator Aven|
          Length = 362

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -2

Query: 181 GARDPGGSVDAERPG---DVRRRPHGGGPAADLGRHQRGR 71
           G   PGG   +ERPG    V R   GGG     GR  RGR
Sbjct: 16  GRGRPGGDRHSERPGAAAAVARGGGGGGGGDGGGRRGRGR 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,278,995
Number of Sequences: 219361
Number of extensions: 527456
Number of successful extensions: 2498
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 2393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2494
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)