ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet81b03 |
|---|---|
| Clone Library Name | barley_pub |
>LDOX_MAIZE (P41213) Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX)| (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase) Length = 395 Score = 34.7 bits (78), Expect = 0.070 Identities = 15/36 (41%), Positives = 25/36 (69%) Frame = +1 Query: 40 AAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAG 147 ++P+ A RV+AL+ +GL +P +Y++P D RAG Sbjct: 3 SSPLLQLPAARVEALSLSGLSAIPPEYVRPADERAG 38
>LDOX_VITVI (P51093) Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX)| (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase) Length = 362 Score = 33.1 bits (74), Expect = 0.20 Identities = 12/29 (41%), Positives = 22/29 (75%) Frame = +1 Query: 49 METAAAPRVQALADAGLPRLPAQYIQPPD 135 M T+ APRV++L+ +G+ +P +YI+P + Sbjct: 1 MVTSVAPRVESLSSSGIQSIPKEYIRPQE 29
>TLE2_BRARE (O13166) Groucho 2 protein| Length = 761 Score = 32.0 bits (71), Expect = 0.45 Identities = 18/57 (31%), Positives = 24/57 (42%) Frame = +1 Query: 7 HHATGG*SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASLS 177 HH G NP +P++ A A A R P +PP +RA P S+S Sbjct: 375 HHEMNGSLTNPGVYAGLHISPQMSAAAAAAYGRSPMAGFEPPHMRAPGLPASLTSIS 431
>ENA_DROME (Q8T4F7) Protein enabled| Length = 834 Score = 31.6 bits (70), Expect = 0.59 Identities = 19/50 (38%), Positives = 21/50 (42%) Frame = +1 Query: 13 ATGG*SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCP 162 A GG P PA P AP A+ P PA PP + GP P P Sbjct: 568 AAGGGPPPPAPPQMFNGAPPPPAMGGGPPPAPPA----PPAMGGGPPPAP 613
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 25.4 bits (54), Expect(2) = 0.95 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -3 Query: 194 RSTTWTEREAEGQGEGPARRSGGWMYCAGRRG 99 RS T E ++ G G G R GG Y +G G Sbjct: 77 RSITVNEAQSRGSGGGGGGRGGGGGYRSGGGG 108 Score = 24.3 bits (51), Expect(2) = 0.95 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = -2 Query: 102 GQAGVGERLDAGRRGGFHGSSG 37 G G G R D G GG+ GS G Sbjct: 141 GGYGGGGRRDGGEGGGYGGSGG 162
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 30.8 bits (68), Expect = 1.0 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +1 Query: 31 PNPAAPMETAA-APRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASLSV 180 P PAAP AA AP A A P PA +PP AGP P+A+ +V Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGP---PTAAPAV 297
>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) (Proline-rich inositol polyphosphate 5-phosphatase) Length = 1001 Score = 30.0 bits (66), Expect = 1.7 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = +1 Query: 55 TAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASLS 177 T+ P+ ALA +GL A QPP + PSP PS LS Sbjct: 173 TSVGPK-PALATSGLSLALASQEQPPQSPSSPSPVPSPVLS 212
>MCM3A_MOUSE (Q9WUU9) 80 kda MCM3-associated protein (GANP protein)| Length = 1971 Score = 30.0 bits (66), Expect = 1.7 Identities = 21/54 (38%), Positives = 22/54 (40%) Frame = +1 Query: 31 PNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASLSVHVVD 192 P P A VQ LA A P L QP L P+P S S V VVD Sbjct: 1024 PQPPPASSATPALHVQPLAPAAAPSLLQASTQPEVLLPKPAPVYSDSDLVQVVD 1077
>HCN4_HUMAN (Q9Y3Q4) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1203 Score = 30.0 bits (66), Expect = 1.7 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Frame = +1 Query: 28 SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPP------DLRAGPSP 156 +P AP++ AAA A+A PRLPA +PP +L AG +P Sbjct: 775 TPLIQAPLQAAAATTSVAIALTHHPRLPAAIFRPPPGSGLGNLGAGQTP 823
>HCN4_MOUSE (O70507) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Brain cyclic nucleotide gated channel 3) (BCNG-3) Length = 1186 Score = 30.0 bits (66), Expect = 1.7 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Frame = +1 Query: 28 SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPP------DLRAGPSP 156 +P AP++ AAA A+A PRLPA +PP +L AG +P Sbjct: 760 TPLIQAPLQAAAATTSVAIALTHHPRLPAAIFRPPPGPGLGNLGAGQTP 808
>HCN4_RAT (Q9JKA7) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 Length = 1198 Score = 30.0 bits (66), Expect = 1.7 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Frame = +1 Query: 28 SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPP------DLRAGPSP 156 +P AP++ AAA A+A PRLPA +PP +L AG +P Sbjct: 775 TPLIQAPLQAAAATTSVAIALTHHPRLPAAIFRPPPGPGLGNLGAGQTP 823
>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1003 Score = 30.0 bits (66), Expect = 1.7 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = +1 Query: 55 TAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASLS 177 T+ P+ ALA +GL A QPP + PSP PS LS Sbjct: 173 TSVGPK-PALATSGLSLALASQEQPPQSPSSPSPVPSPVLS 212
>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral| proteinase B) (CANP B) [Contains: Calpain B catalytic subunit 1; Calpain B catalytic subunit 2] Length = 925 Score = 30.0 bits (66), Expect = 1.7 Identities = 21/58 (36%), Positives = 27/58 (46%) Frame = +1 Query: 31 PNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASLSVHVVDLSAT 204 P P APM T+ AP+ + G P LP PP+ +P SV V +LS T Sbjct: 167 PMPYAPMPTSPAPQ----HNIGFPALPYPTAPPPE----SAPTQEEEPSVGVAELSFT 216
>HCFC1_MOUSE (Q61191) Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF| N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF C-terminal chain 1; HCF C-termi Length = 2045 Score = 29.6 bits (65), Expect = 2.3 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +1 Query: 37 PAAPMETAAAPRVQALADAGLPRLPAQYIQPPD---LRAGPSPCPSASLSV 180 P +P AAAP VQ L G+ +P PP ++ P+ P +S+SV Sbjct: 425 PKSPAPAAAAPAVQPLTQVGITLVPQAATAPPSTTTIQVLPT-VPGSSISV 474
>HCFC1_MESAU (P51611) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory| protein) (VCAF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain 6; HCF Length = 2090 Score = 29.6 bits (65), Expect = 2.3 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +1 Query: 37 PAAPMETAAAPRVQALADAGLPRLPAQYIQPPD---LRAGPSPCPSASLSV 180 P +P AAAP VQ L G+ +P PP ++ P+ P +S+SV Sbjct: 425 PKSPAPAAAAPAVQPLTQVGITLVPQAAAAPPSTTTIQVLPT-VPGSSISV 474
>HCFC1_HUMAN (P51610) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory| protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1; HCF N-terminal chain 2; HCF N-terminal chain 3; HCF N-terminal chain 4; HCF N-terminal chain 5; HCF N-terminal chain Length = 2035 Score = 29.6 bits (65), Expect = 2.3 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +1 Query: 37 PAAPMETAAAPRVQALADAGLPRLPAQYIQPP---DLRAGPSPCPSASLSV 180 P +P AAAP VQ L G+ LP PP ++ P+ P +S+SV Sbjct: 425 PKSPAPAAAAPAVQPLTQVGITLLPQAAPAPPTTTTIQVLPT-VPGSSISV 474
>VP40_BHV1C (P54817) Capsid protein P40 [Contains: Assemblin (Protease) (EC| 3.4.21.97); Capsid assembly protein] Length = 621 Score = 29.6 bits (65), Expect = 2.3 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +1 Query: 91 AGLPRLPAQYIQPPDLRAGPSPCPS 165 A LP LP QY PP + AGP+ P+ Sbjct: 525 AHLPCLPQQYTAPPRVGAGPAQVPT 549
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 29.6 bits (65), Expect = 2.3 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = +1 Query: 28 SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASL 174 +P AP++ AAA A+A PRLPA +PP P P SL Sbjct: 772 TPLIQAPLQAAAATTSVAIALTHHPRLPAAIFRPP-----PGPTTLGSL 815
>PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-containing| protein 2) (Retinoblastoma protein-interacting zinc-finger protein) (Zinc finger protein RIZ) (MTE-binding protein) (MTB-ZF) (GATA-3-binding protein G3B) Length = 1718 Score = 29.6 bits (65), Expect = 2.3 Identities = 15/43 (34%), Positives = 17/43 (39%) Frame = +1 Query: 37 PAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPS 165 P P P V +A P LP + P A P PCPS Sbjct: 967 PTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPS 1009
>SN1L1_HUMAN (P57059) Serine/threonine-protein kinase SNF1-like kinase 1 (EC| 2.7.11.1) (Serine/threonine-protein kinase SNF1LK) Length = 783 Score = 29.3 bits (64), Expect = 2.9 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 7/55 (12%) Frame = +1 Query: 28 SPNPA-APMETA------AAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSAS 171 +P PA AP A AAP L +GLP LP PP L+ G SP SA+ Sbjct: 676 APQPAPAPFVIAPCDGPGAAPLPSTLLTSGLPLLP-----PPLLQTGASPVASAA 725
>BAT3_HUMAN (P46379) Large proline-rich protein BAT3 (HLA-B-associated| transcript 3) (Protein G3) Length = 1132 Score = 29.3 bits (64), Expect = 2.9 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = +1 Query: 28 SPNPAAPMETAAAPRVQALADAGLPRLPAQ--YIQPPDLRAGPSPCPSASLSVH 183 S + P+E+ A PR A+ R PAQ + P AGP+P P + H Sbjct: 217 SSQTSEPVESEAPPREPMEAEEVEERAPAQNPELTPGPAPAGPTPAPETNAPNH 270
>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1006 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = +1 Query: 82 LADAGLPRLPAQYIQPPDLRAGPSPCPSASLS 177 LA +GL A QPP+L + PSP PS LS Sbjct: 180 LAASGLSLALASEEQPPELPSTPSPVPSPVLS 211
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 28.9 bits (63), Expect = 3.9 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Frame = +1 Query: 31 PNPAAPMETAAA-------PRVQA----LADAGLPRLPAQYIQPPDLRAGPSPCPSAS 171 P PAAP +AA P VQA A G P PA P ++G +P P+A+ Sbjct: 96 PAPAAPSAASAAKPGAAPKPGVQAKPAAAAKPGAPAKPAAPAAPSAAKSGSAPKPAAA 153
>YMI3_YEAST (Q04526) Hypothetical 47.3 kDa protein in TUB1-CPR3 intergenic| region Length = 418 Score = 28.9 bits (63), Expect = 3.9 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = +1 Query: 64 APRVQALADAGLPRLPAQYIQPPDLRAGPSPCPS 165 +PR Q A A P L I+ PDL+ PSP PS Sbjct: 93 SPRPQFEATAPSPPLAPVAIKLPDLKLPPSPVPS 126
>FOG1_XENLA (Q9I9K0) Zinc finger protein FOG (Friend of GATA) (xFOG) (Fragment)| Length = 1061 Score = 28.5 bits (62), Expect = 5.0 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Frame = +1 Query: 28 SPNPAAPMETA----AAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPS 165 +P P P A + P ++ + GLPR+P+Q + P D +A P PS Sbjct: 970 TPRPLLPTSPAPPSNSLPLAESRREDGLPRVPSQVLLPGD-KAMQPPKPS 1018
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 28.1 bits (61), Expect = 6.6 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 31 PNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASLS 177 P+PA A R + A +G P PA QP A P+P P+ L+ Sbjct: 70 PSPAPEPRGGKAKRSPSAAGSGGPPTPAAAAQP----ASPAPSPAPGLA 114
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 28.1 bits (61), Expect = 6.6 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 31 PNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASLS 177 P+PA A R + A +G P PA QP A P+P P+ L+ Sbjct: 70 PSPAPEPRGGKAKRSPSAAGSGGPPTPAAAAQP----ASPAPSPAPGLA 114
>ERMA_ARTS3 (P09891) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)| (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) Length = 340 Score = 28.1 bits (61), Expect = 6.6 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = -2 Query: 111 REAGQAGVGERLDAGRRGGFHGSSGVRRLPTGG 13 R G+AG G R DAG R G G R P GG Sbjct: 306 RPDGRAGGGPRRDAGGRRTGDGRGGRPRPPRGG 338
>SOX30_HUMAN (O94993) Transcription factor SOX-30| Length = 753 Score = 28.1 bits (61), Expect = 6.6 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +1 Query: 46 PMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSAS 171 P+ +A R+ + A R IQPP + SPCP ++ Sbjct: 537 PVSLESANRISSSASTAHARFATSTIQPPREYSSVSPCPRSA 578
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 28.1 bits (61), Expect = 6.6 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = +1 Query: 19 GG*SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPS 165 GG P P P A+AP+ A A P P ++ GP+P P+ Sbjct: 78 GGPRPGPRTPAPAASAPQAPAEQTA----RPTDARPGPAVKPGPAPTPA 122
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 28.1 bits (61), Expect = 6.6 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +1 Query: 28 SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASLS 177 SP+P +P+ + AP + A P PP PSP PS S S Sbjct: 307 SPSPPSPVPPSPAPVPPSPAPPSPAPSPPPSPAPPTPSPSPSPSPSPSPS 356
>GAG_FSVST (P03338) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30] Length = 371 Score = 27.7 bits (60), Expect = 8.6 Identities = 18/48 (37%), Positives = 23/48 (47%) Frame = +1 Query: 19 GG*SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCP 162 GG P P+ P AA+P V L + PA+ Q LR GP+ P Sbjct: 236 GGHGPPPSGPRTPAASPIVSRLRER--RENPAEESQALPLREGPNNRP 281
>STK39_RAT (O88506) STE20/SPS1-related proline-alanine-rich protein kinase (EC| 2.7.11.1) (Ste-20-related kinase) (Serine/threonine-protein kinase 39) (Pancreatic serine/threonine-protein kinase) (PS/TK) (PSTK1) Length = 553 Score = 27.7 bits (60), Expect = 8.6 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = +1 Query: 31 PNPAAPMETAAA-PRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSA 168 P AAP+ AAA P A A P A P A P+P P+A Sbjct: 14 PQQAAPVTAAAAAPAAATSAPAPAPAPAAPAAPAPAPAAAPAPAPAA 60
>COFG_METAC (Q8TQP9) FO synthase subunit 1 (EC 2.5.1.-)| (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1) Length = 329 Score = 27.7 bits (60), Expect = 8.6 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Frame = +1 Query: 28 SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSP---CPSASLSVHVVDL 195 +P P PME+ P V+ + DA + A+++ P D+ +P P A + V DL Sbjct: 195 APKPGTPMESFPEPTVEEMMDA---VVLARHVLPSDVSVQVAPNLIDPKALIGKGVTDL 250
>CCNK_MOUSE (O88874) Cyclin-K| Length = 554 Score = 27.7 bits (60), Expect = 8.6 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = +1 Query: 46 PMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSAS 171 P+ET+ P+VQ P PA QPP L P P P +S Sbjct: 392 PVETSDLPKVQIPP----PAHPAPVHQPPPLPHRPPPPPPSS 429
>SOX30_MACFA (Q8WNV5) Transcription factor SOX-30| Length = 753 Score = 27.7 bits (60), Expect = 8.6 Identities = 14/54 (25%), Positives = 22/54 (40%) Frame = +1 Query: 10 HATGG*SPNPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSAS 171 H+ G + P+ + R+ A R IQPP + SPCP ++ Sbjct: 525 HSEGTHTVKQPTPVSLESTNRISNSASTAHARFATSTIQPPKEYSSVSPCPRSA 578
>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)| Length = 640 Score = 27.7 bits (60), Expect = 8.6 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = +1 Query: 31 PNPAAPMETAAAPRV-QALADAGLPRL---PAQYIQPPDLRAGPSPCP 162 P P+APM P + QA G P L PA ++PP +GP P P Sbjct: 352 PVPSAPMAAQQPPSLMQAPPITGPPPLGPPPAPPMRPPGPPSGPPPGP 399
>POLN_SINDV (P03317) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; P123'; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC Length = 2512 Score = 27.7 bits (60), Expect = 8.6 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +1 Query: 34 NPAAPMETAAAPRVQALADAGLPRLPAQYIQPPDLRAGPSPCPSASLSVHVVDLS 198 NP P A ++ P PAQ + P++ A PSP + + S+ V D+S Sbjct: 1660 NPHTPAFVPARKYIEVPEQPTAP--PAQAEEAPEVVATPSPSTADNTSLDVTDIS 1712 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,025,571 Number of Sequences: 219361 Number of extensions: 343378 Number of successful extensions: 2033 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 1868 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2029 length of database: 80,573,946 effective HSP length: 43 effective length of database: 71,141,423 effective search space used: 1707394152 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
