>PER1_SORBI (P84516) Cationic peroxidase SPC4 precursor (EC 1.11.1.7)|
           (Fragment)
          Length = 213

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
 Frame = +3

Query: 42  LCRATAMASRATVTVLVLAALICAAQSTISAAD--------AGGLSRGFHAASCPGLEKI 197
           + RA  +A+ A V  +VL   IC++ ST +AAD        A GLS  F+  SCP  E I
Sbjct: 1   MSRAPTLAAAAAVAAVVL---ICSS-STATAADGNARQPPLAPGLSFDFYKRSCPKAESI 56

Query: 198 VGDLVAETFRRDVG 239
           V   V +  RRDVG
Sbjct: 57  VRSFVQDAVRRDVG 70

>PER15_ARATH (Q9SI16) Peroxidase 15 precursor (EC 1.11.1.7) (Atperox P15)|
           (ATP36)
          Length = 338

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 84  VLVLAALICAAQSTISAADAGGLSRGFHAASCPGLEKIVGDLVAETFRRD 233
           +  L   IC    +    D G L  GF+ +SCP  E+IV  +VA+   R+
Sbjct: 14  IYALTLCICDDDESNYGGDKGNLFPGFYRSSCPRAEEIVRSVVAKAVARE 63

>PER12_ARATH (Q96520) Peroxidase 12 precursor (EC 1.11.1.7) (Atperox P12)|
           (PRXR6) (ATP4a)
          Length = 358

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
 Frame = +3

Query: 54  TAMASRATVTVLVLAALICAAQSTISAADAG----------GLSRGFHAASCPGLEKIVG 203
           T   S   +T L+L +L+    +     +A           GLS  F+  +CP +E I+ 
Sbjct: 2   TKAYSTRVLTFLILISLMAVTLNLFPTVEAKKRSRDAPIVKGLSWNFYQKACPKVENIIR 61

Query: 204 DLVAETFRRDVG 239
             + + F+RD+G
Sbjct: 62  KELKKVFKRDIG 73

>PER35_ARATH (Q96510) Peroxidase 35 precursor (EC 1.11.1.7) (Atperox P35)|
           (ATP21a)
          Length = 329

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 87  LVLAALICAAQSTISAADAGGLSRGFHAASCPGLEKIVGDLVAETFRR 230
           +VL   +C   S         LSRGF++ +CP +E+IV + V +  ++
Sbjct: 6   IVLLIGLCLIISVFPDTTTAQLSRGFYSKTCPNVEQIVRNAVQKKIKK 53

>WDR7_MOUSE (Q920I9) WD-repeat protein 7 (TGF-beta resistance-associated protein|
            TRAG)
          Length = 1489

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
 Frame = -2

Query: 208  RSPTIFSRPGHDAAWKPRDSPPASA----AEMVDWAAQIKAARTRTVTVALDAIAVALQR 41
            + PT   RPG     K RDSPPAS+     ++   AA + +AR+       D+ + AL  
Sbjct: 916  KGPTRPPRPGTPDLSKARDSPPASSNIVQGQIKQAAAPVVSARSDADHSGSDSASPALPT 975

Query: 40   CS*AFLHDDG 11
            C   FL ++G
Sbjct: 976  C---FLVNEG 982

>PER44_ARATH (Q93V93) Peroxidase 44 precursor (EC 1.11.1.7) (Atperox P44)|
           (ATP35)
          Length = 310

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 150 LSRGFHAASCPGLEKIVGDLVAETFRRD 233
           L  GF++ SCP  E IV  +VA  FR D
Sbjct: 22  LRTGFYSRSCPRAESIVASVVANRFRSD 49

>LEU3_DESVH (Q726X1) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 357

 Score = 31.2 bits (69), Expect = 0.75
 Identities = 21/52 (40%), Positives = 25/52 (48%)
 Frame = -1

Query: 239 ADVAPEGLRHEVPHDLLQARARRGVEAPGQPAGVRGRDGRLGGADQGCQDED 84
           AD+A  GL      DL+  R   G    GQPAG+  RDG   G +    DED
Sbjct: 122 ADIAAAGL------DLVVVRELTGDVYFGQPAGIETRDGLRTGFNTMIYDED 167

>CRTI_CERNC (P48537) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene|
           desaturase)
          Length = 621

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 190 SRPGHDAAWKPRDSPPASAAEMVDWAAQIKAAR 92
           SR GH ++  P D P  +  E  DW A I  AR
Sbjct: 404 SRNGHISSASPPDQPGLTPTEKQDWPAMISLAR 436

>PER56_ARATH (Q9LXG3) Peroxidase 56 precursor (EC 1.11.1.7) (Atperox P56)|
           (ATP33)
          Length = 329

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 63  ASRATVTVLVLAALICAAQSTISAADAGGLSRGFHAASCPGLEKIVGDLVAETFRRD 233
           A + T++  +   +I    S+ +  +  GL  GF+  +CP  E IV   V E  + D
Sbjct: 3   ALKMTISCFLFLQVIYCLLSSFAPTNVQGLKVGFYDKACPKAELIVKKSVFEAVKND 59

>PER27_ARATH (Q43735) Peroxidase 27 precursor (EC 1.11.1.7) (Atperox P27)|
           (PRXR7) (ATP12a)
          Length = 321

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 57  AMASRATVTVLVLAALICAAQSTISAADAGGLSRGFHAASCPGLEKIVGDLVAETFRR 230
           A + R  V+ L L  L   A S        GL  GF++ +CP LE IV  +V +   +
Sbjct: 2   AASKRLVVSCLFLVLLFAQANSQ-------GLKVGFYSKTCPQLEGIVKKVVFDAMNK 52

>ENT1_HUMAN (P61550) HERV-T_19q13.11 provirus ancestral Env polyprotein|
           precursor (Envelope polyprotein) (HERV-T Env protein)
           [Includes: Surface protein (SU); Transmembrane protein
           (TM)]
          Length = 626

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -1

Query: 227 PEGLR-HEVPHDLLQARARRGVEAPG-QPAGVRGRDGRLGGADQGCQDEDGHCCSGRH-- 60
           PE  R HE  H+L    A     A G   +G +   G   GA++G Q+ D + C G H  
Sbjct: 79  PEPARTHEEQHNLPVIGAGSVDLAAGFGHSGSQTGCGSSKGAEKGLQNVDFYLCPGNHPD 138

Query: 59  -CCRPTEM*LSFFAR*WSC 6
             CR T     FF   W+C
Sbjct: 139 ASCRDT---YQFFCPDWTC 154

>PER13_ARATH (O49293) Peroxidase 13 precursor (EC 1.11.1.7) (Atperox P13)|
          Length = 319

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 141 AGGLSRGFHAASCPGLEKIVGDLVAETFRRDVG 239
           A  L  GF++ +CP  E IV D+V +    D G
Sbjct: 21  AAQLQFGFYSETCPSAESIVRDVVQQAVTNDPG 53

>PER62_ARATH (Q9FKA4) Peroxidase 62 precursor (EC 1.11.1.7) (Atperox P62)|
           (ATP24a)
          Length = 319

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 99  ALICAAQSTISAADAGGLSRGFHAASCPGLEKIVGDLVAETFRRD 233
           AL+    S + A    G   GF++ +CP  E IV   VA  F  D
Sbjct: 8   ALVIVFLSCLIAVYGQGTRIGFYSTTCPNAETIVRTTVASHFGSD 52

>PG46_MYCTU (P0A690) Hypothetical PE-PGRS family protein PE_PGRS46|
          Length = 778

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 170 GVEAPGQPAGVRGRDGRLGGADQGCQDEDGHCCSG 66
           G  APGQP G  G  G +G    G +  DG   SG
Sbjct: 146 GSGAPGQPGGAGGDAGLIGNGGTGGKGGDGLVGSG 180

>PG46_MYCBO (P0A691) Hypothetical PE-PGRS family protein PE_PGRS46|
          Length = 778

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -1

Query: 170 GVEAPGQPAGVRGRDGRLGGADQGCQDEDGHCCSG 66
           G  APGQP G  G  G +G    G +  DG   SG
Sbjct: 146 GSGAPGQPGGAGGDAGLIGNGGTGGKGGDGLVGSG 180

>KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-associated protein|
           5.1) (Ultrahigh sulfur keratin-associated protein 5.1)
          Length = 278

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/41 (31%), Positives = 15/41 (36%)
 Frame = -1

Query: 170 GVEAPGQPAGVRGRDGRLGGADQGCQDEDGHCCSGRHCCRP 48
           G    G  +G  G     GG   GC      CC    CC+P
Sbjct: 11  GSSCGGCGSGCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKP 51

>KRA59_HUMAN (P26371) Keratin-associated protein 5-9 (Keratin-associated protein|
           5.9) (Ultrahigh sulfur keratin-associated protein 5.9)
           (Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
           high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
          Length = 169

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 134 GRDGRLGGADQGCQDEDGHCCSGRHCCRP 48
           G D   G    GC+     CC+  +CC+P
Sbjct: 16  GCDSSCGSCGSGCRGCGPSCCAPVYCCKP 44

>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)|
          Length = 623

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 170 GVEAPGQPAGVRGRDGRLGGADQGCQDEDG 81
           GV  P  P G  G  G+ G   QGC+ E G
Sbjct: 316 GVPGPRGPEGAMGFPGQRGPPGQGCKGEPG 345

>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2|
          Length = 1514

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 155 GQPAGV-RGRDGRLGGADQGCQDEDGHCCSGRHCCRP 48
           G+P G    R G + G +Q      G  CS  HCCRP
Sbjct: 155 GRPWGATHSRPGVVEGQEQDPATALGTQCSTSHCCRP 191

>PER3_ARMRU (P17180) Peroxidase C3 precursor (EC 1.11.1.7)|
          Length = 349

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +3

Query: 60  MASRATVTVLVLAALICAAQSTISAADAGGLSRGFHAASCPGLEKIVGDLVAETFRRD 233
           + S + +  L+L+ L+  A ++ +      L   F+  +CP +  I+GD++ +  R D
Sbjct: 6   LISCSAMGALILSCLLLQASNSNAQ-----LRPDFYFRTCPSVFNIIGDIIVDELRTD 58

>ETFA_BRAJA (P53573) Electron transfer flavoprotein alpha-subunit (Alpha-ETF)|
           (Electron transfer flavoprotein large subunit) (ETFLS)
          Length = 314

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 102 LICAAQSTISAADAGGLS--RGFHAASCPGLEKIVGDLVAETFRRDV 236
           +I    ST +AA  GG +      AA+ PGL   VG+ VA++ R ++
Sbjct: 144 VITVRTSTFAAAGEGGSAPVESVQAAADPGLSSFVGEEVAKSDRPEL 190

>DDX54_HUMAN (Q8TDD1) ATP-dependent RNA helicase DDX54 (EC 3.6.1.-) (DEAD box|
           protein 54) (ATP-dependent RNA helicase DP97)
          Length = 881

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 233 VAPEGLRHEVPHDLLQARARRGVEAPGQPAGVRGRDGRLGGADQGCQDED 84
           VAP+ + + +   L   R+        +P+GV G DG LG   Q   DE+
Sbjct: 442 VAPDEIPYLLDLHLFLGRSLTLARPLKEPSGVAGVDGMLGRVPQSVVDEE 491

>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 185 ARARRGVEAPGQPAGVRGRDGRLGGADQGCQDEDG 81
           A    G   PG P G RGR G  GG   G   +DG
Sbjct: 291 ANGSPGQPGPGGPTGERGRPGNPGG--PGAHGKDG 323

>US02_BHV1S (Q08099) Protein US2 homolog|
          Length = 220

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 139 TPAGCPGASTPRRARAWRRSWGTSWRRPSGA 231
           T AGC   ST   A  W  S    W  P GA
Sbjct: 55  TAAGCTSTSTSTPAAGWLLSTQRPWPAPGGA 85

>PER50_ARATH (Q43731) Peroxidase 50 precursor (EC 1.11.1.7) (Atperox P50)|
           (PRXR2) (ATP9a)
          Length = 329

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 84  VLVLAALICAAQSTISAADAGGLSRGFHAASCPGLEKIVGDLV 212
           +L+L   +C      SA     L R F+A SCP +E+IV + V
Sbjct: 9   LLLLLLSLCLTLDLSSAQ----LRRNFYAGSCPNVEQIVRNAV 47

>DICH_DROME (Q24533) SOX-domain protein dichaete (Protein fish-hook)|
          Length = 382

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
 Frame = -1

Query: 212 HEVPHDLLQARARRGVEAPGQP---AGVRGRDGRLGGADQGCQDEDGHCCSGRH 60
           H  PH + QA + +   +P      AG  G    LG    G     GH  +G H
Sbjct: 77  HMTPHHMHQAVSAQQTLSPNSSIGSAGSLGSQSSLGSNGSGLNSSSGHQSAGMH 130


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.129    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,419,207
Number of Sequences: 219361
Number of extensions: 511171
Number of successful extensions: 2648
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2640
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)