| Clone Name | baet81b02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds Length = 1308 Score = 81.8 bits (41), Expect = 9e-13 Identities = 80/93 (86%) Strand = Plus / Plus Query: 147 gggctgtcccggggcttccacgccgcgtcgtgcccgggcctggagaagatcgtgggggac 206 ||||| || ||| |||||||||| ||||||||||||| |||||||| |||| ||| Sbjct: 106 gggctttcgcggagcttccacgcggcgtcgtgcccggatctggagaacatcgcgggatcg 165 Query: 207 ctcgtggcggagaccttccggcgcgacgtcggc 239 |||||||||||||||||||| |||||||||||| Sbjct: 166 ctcgtggcggagaccttccgccgcgacgtcggc 198 Score = 75.8 bits (38), Expect = 6e-11 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand = Plus / Plus Query: 31 ctcagctacatctctgtagggcgacagcaatggcgtccagagcaacagtgaccgtcctcg 90 ||||||||||||| | || ||| |||| ||||||||||||||| ||| | |||| |||| Sbjct: 1 ctcagctacatct--gcagcgcggcagccatggcgtccagagcagcagcggccgttctcg 58 Query: 91 tcctggcagccttgatctgcgccgc 115 |||| |||||||||||||||||||| Sbjct: 59 tccttgcagccttgatctgcgccgc 83
>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar Cheyenne Length = 1226 Score = 54.0 bits (27), Expect = 2e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 161 cttccacgccgcgtcgtgcccgggcctggagaagatcgtgggggacctcgtggcggagac 220 ||||||||||||| ||||||||| ||||||| | ||||||| | || ||| || ||||| Sbjct: 166 cttccacgccgcgacgtgcccggacctggagcacatcgtggagttccacgtcgccgagac 225 Query: 221 cttccggcgcgacgt 235 ||||| |||||||| Sbjct: 226 gttccgccgcgacgt 240
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase Length = 1245 Score = 46.1 bits (23), Expect = 0.050 Identities = 62/75 (82%) Strand = Plus / Plus Query: 161 cttccacgccgcgtcgtgcccgggcctggagaagatcgtgggggacctcgtggcggagac 220 |||||||||||| ||||||||| ||||||| ||||||| | || ||| || ||||| Sbjct: 179 cttccacgccgccacgtgcccggacctggagcgcatcgtggagttccacgtcgccgagac 238 Query: 221 cttccggcgcgacgt 235 |||||||||||||| Sbjct: 239 gttccggcgcgacgt 253 Score = 40.1 bits (20), Expect = 3.1 Identities = 52/62 (83%), Gaps = 3/62 (4%) Strand = Plus / Plus Query: 55 cagcaatggcgtccagagcaacagtgaccgtcctcgtcctggcagccttgatctgcgccg 114 |||||||||||||||||||| ||| | || || ||||||||| |||| ||||||||| Sbjct: 88 cagcaatggcgtccagagcagcagcggccatcgccgtcctggc---cttggtctgcgccg 144 Query: 115 cc 116 || Sbjct: 145 cc 146
>ref|XM_695561.1| PREDICTED: Danio rerio similar to beach protein (LOC571916), partial mRNA Length = 1856 Score = 46.1 bits (23), Expect = 0.050 Identities = 23/23 (100%) Strand = Plus / Minus Query: 143 cggcgggctgtcccggggcttcc 165 ||||||||||||||||||||||| Sbjct: 291 cggcgggctgtcccggggcttcc 269
>gb|AC146172.2| Pan troglodytes BAC clone RP43-24M4 from 7, complete sequence Length = 223283 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggccgcggacgccggcgggc 150 |||||||||||||||||||| Sbjct: 132414 ggccgcggacgccggcgggc 132433
>emb|BX248355.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 2/8 Length = 341553 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 140 cgccggcgggctgtcccggggcttccac 167 |||||||||||||||| | ||||||||| Sbjct: 334335 cgccggcgggctgtcctgaggcttccac 334362
>emb|CR931730.1| Medicago truncatula chromosome 5 clone mth2-17o15, COMPLETE SEQUENCE Length = 89342 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 gccgcgtcgtgcccgggcct 187 |||||||||||||||||||| Sbjct: 46882 gccgcgtcgtgcccgggcct 46901
>gb|AC148316.3| Pan troglodytes BAC clone CH251-508B1 from chromosome 7, complete sequence Length = 162525 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 ggccgcggacgccggcgggc 150 |||||||||||||||||||| Sbjct: 132209 ggccgcggacgccggcgggc 132228
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 cggccgcggacgccggcgggctgt 153 ||||||||||||||| |||||||| Sbjct: 8554572 cggccgcggacgccgccgggctgt 8554549
>dbj|AB070944.1| Streptomyces avermitilis polyketide-4 biosynthetic gene cluster Length = 19601 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 cggccgcggacgccggcgggctgt 153 ||||||||||||||| |||||||| Sbjct: 6512 cggccgcggacgccgccgggctgt 6489 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,394,790 Number of Sequences: 3902068 Number of extensions: 1394790 Number of successful extensions: 24936 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24858 Number of HSP's gapped (non-prelim): 76 length of query: 239 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 217 effective length of database: 17,147,199,772 effective search space: 3720942350524 effective search space used: 3720942350524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)