ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet81b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, p... 82 9e-13
2emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 54 2e-04
3emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 46 0.050
4ref|XM_695561.1| PREDICTED: Danio rerio similar to beach protein... 46 0.050
5gb|AC146172.2| Pan troglodytes BAC clone RP43-24M4 from 7, compl... 40 3.1
6emb|BX248355.1| Corynebacterium diphtheriae gravis NCTC13129, co... 40 3.1
7emb|CR931730.1| Medicago truncatula chromosome 5 clone mth2-17o... 40 3.1
8gb|AC148316.3| Pan troglodytes BAC clone CH251-508B1 from chromo... 40 3.1
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.1
10dbj|AB070944.1| Streptomyces avermitilis polyketide-4 biosynthet... 40 3.1

>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds
          Length = 1308

 Score = 81.8 bits (41), Expect = 9e-13
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                       
Query: 147 gggctgtcccggggcttccacgccgcgtcgtgcccgggcctggagaagatcgtgggggac 206
           ||||| || ||| |||||||||| |||||||||||||  |||||||| |||| |||    
Sbjct: 106 gggctttcgcggagcttccacgcggcgtcgtgcccggatctggagaacatcgcgggatcg 165

                                            
Query: 207 ctcgtggcggagaccttccggcgcgacgtcggc 239
           |||||||||||||||||||| ||||||||||||
Sbjct: 166 ctcgtggcggagaccttccgccgcgacgtcggc 198



 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 74/85 (87%), Gaps = 2/85 (2%)
 Strand = Plus / Plus

                                                                       
Query: 31  ctcagctacatctctgtagggcgacagcaatggcgtccagagcaacagtgaccgtcctcg 90
           |||||||||||||  | || ||| |||| ||||||||||||||| ||| | |||| ||||
Sbjct: 1   ctcagctacatct--gcagcgcggcagccatggcgtccagagcagcagcggccgttctcg 58

                                    
Query: 91  tcctggcagccttgatctgcgccgc 115
           |||| ||||||||||||||||||||
Sbjct: 59  tccttgcagccttgatctgcgccgc 83



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>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene),
           cultivar Cheyenne
          Length = 1226

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                       
Query: 161 cttccacgccgcgtcgtgcccgggcctggagaagatcgtgggggacctcgtggcggagac 220
           ||||||||||||| ||||||||| ||||||| | ||||||| |  || ||| || |||||
Sbjct: 166 cttccacgccgcgacgtgcccggacctggagcacatcgtggagttccacgtcgccgagac 225

                          
Query: 221 cttccggcgcgacgt 235
            ||||| ||||||||
Sbjct: 226 gttccgccgcgacgt 240



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>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                       
Query: 161 cttccacgccgcgtcgtgcccgggcctggagaagatcgtgggggacctcgtggcggagac 220
           ||||||||||||  ||||||||| |||||||   ||||||| |  || ||| || |||||
Sbjct: 179 cttccacgccgccacgtgcccggacctggagcgcatcgtggagttccacgtcgccgagac 238

                          
Query: 221 cttccggcgcgacgt 235
            ||||||||||||||
Sbjct: 239 gttccggcgcgacgt 253



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 52/62 (83%), Gaps = 3/62 (4%)
 Strand = Plus / Plus

                                                                       
Query: 55  cagcaatggcgtccagagcaacagtgaccgtcctcgtcctggcagccttgatctgcgccg 114
           |||||||||||||||||||| ||| | || ||  |||||||||   |||| |||||||||
Sbjct: 88  cagcaatggcgtccagagcagcagcggccatcgccgtcctggc---cttggtctgcgccg 144

             
Query: 115 cc 116
           ||
Sbjct: 145 cc 146



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>ref|XM_695561.1| PREDICTED: Danio rerio similar to beach protein (LOC571916),
           partial mRNA
          Length = 1856

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 143 cggcgggctgtcccggggcttcc 165
           |||||||||||||||||||||||
Sbjct: 291 cggcgggctgtcccggggcttcc 269



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>gb|AC146172.2| Pan troglodytes BAC clone RP43-24M4 from 7, complete sequence
          Length = 223283

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ggccgcggacgccggcgggc 150
              ||||||||||||||||||||
Sbjct: 132414 ggccgcggacgccggcgggc 132433



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>emb|BX248355.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
              2/8
          Length = 341553

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 140    cgccggcgggctgtcccggggcttccac 167
              |||||||||||||||| | |||||||||
Sbjct: 334335 cgccggcgggctgtcctgaggcttccac 334362



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>emb|CR931730.1| Medicago truncatula chromosome 5 clone  mth2-17o15, COMPLETE SEQUENCE
          Length = 89342

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   gccgcgtcgtgcccgggcct 187
             ||||||||||||||||||||
Sbjct: 46882 gccgcgtcgtgcccgggcct 46901



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>gb|AC148316.3| Pan troglodytes BAC clone CH251-508B1 from chromosome 7, complete
              sequence
          Length = 162525

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 131    ggccgcggacgccggcgggc 150
              ||||||||||||||||||||
Sbjct: 132209 ggccgcggacgccggcgggc 132228



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 130     cggccgcggacgccggcgggctgt 153
               ||||||||||||||| ||||||||
Sbjct: 8554572 cggccgcggacgccgccgggctgt 8554549



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>dbj|AB070944.1| Streptomyces avermitilis polyketide-4 biosynthetic gene cluster
          Length = 19601

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 130  cggccgcggacgccggcgggctgt 153
            ||||||||||||||| ||||||||
Sbjct: 6512 cggccgcggacgccgccgggctgt 6489


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,394,790
Number of Sequences: 3902068
Number of extensions: 1394790
Number of successful extensions: 24936
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24858
Number of HSP's gapped (non-prelim): 76
length of query: 239
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 217
effective length of database: 17,147,199,772
effective search space: 3720942350524
effective search space used: 3720942350524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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