>gb|AY112303.1| Zea mays CL26549_1 mRNA sequence
          Length = 842

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 58/64 (90%)
 Strand = Plus / Minus

                                                                       
Query: 141 caacaagcaacgcgagggcgcggaaatcatcaccggcgcggaggcgtgctacgcgcactc 200
           ||||||||| ||||||||||||||  ||||||| ||||||||||| |||| |||||||||
Sbjct: 696 caacaagcagcgcgagggcgcggaggtcatcacgggcgcggaggcctgcttcgcgcactc 637

               
Query: 201 caag 204
           ||||
Sbjct: 636 caag 633

>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 151     cgcgagggcgcggaaatcatcaccg 175
               |||||| ||||||||||||||||||
Sbjct: 1284981 cgcgagcgcgcggaaatcatcaccg 1284957

>gb|AC163615.5| Mus musculus BAC clone RP23-104L12 from chromosome 8, complete sequence
          Length = 222950

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 8      cacacaagcagcacacacaca 28
              |||||||||||||||||||||
Sbjct: 177923 cacacaagcagcacacacaca 177943

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 111     ctcgcagacgacaccggcggc 131
               |||||||||||||||||||||
Sbjct: 5003662 ctcgcagacgacaccggcggc 5003642

>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12
          Length = 286550

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   caccggcggccagcaacgcca 142
             |||||||||||||||||||||
Sbjct: 65277 caccggcggccagcaacgcca 65257

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 151     cgcgagggcgcggaaatcatcaccg 175
               |||||| ||||||||||||||||||
Sbjct: 1082302 cgcgagcgcgcggaaatcatcaccg 1082278

>gb|AE012077.1| Xanthomonas axonopodis pv. citri str. 306,  section 455 of 469 of the
            complete genome
          Length = 9754

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 111  ctcgcagacgacaccggcggc 131
            |||||||||||||||||||||
Sbjct: 2393 ctcgcagacgacaccggcggc 2373

>gb|AE012198.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 106
            of 460 of the complete genome
          Length = 12541

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 121  acaccggcggccagcaacgcc 141
            |||||||||||||||||||||
Sbjct: 5161 acaccggcggccagcaacgcc 5141

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 0.71
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 121     acaccggcggccagcaacgcc 141
               |||||||||||||||||||||
Sbjct: 3873796 acaccggcggccagcaacgcc 3873816

>ref|XM_550315.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3282

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 167  tcatcaccggcgcggaggcg 186
            ||||||||||||||||||||
Sbjct: 2408 tcatcaccggcgcggaggcg 2427

>gb|BC068087.1| Homo sapiens cDNA clone IMAGE:6261819, partial cds
          Length = 1266

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  gatggcctccctcaccgtct 112
           ||||||||||||||||||||
Sbjct: 203 gatggcctccctcaccgtct 184

>gb|AC116129.13| Mus musculus chromosome 1, clone RP23-98F11, complete sequence
          Length = 216320

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 5     caccacacaagcagcacacacaca 28
             ||||||||||||| ||||||||||
Sbjct: 66150 caccacacaagcaccacacacaca 66127

>dbj|AK090980.1| Homo sapiens cDNA FLJ33661 fis, clone BRAMY2026778
          Length = 2044

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  gatggcctccctcaccgtct 112
           ||||||||||||||||||||
Sbjct: 990 gatggcctccctcaccgtct 971

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 167     tcatcaccggcgcggaggcg 186
               ||||||||||||||||||||
Sbjct: 3960029 tcatcaccggcgcggaggcg 3960048

>gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, complete sequence
          Length = 217346

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    gatggcctccctcaccgtct 112
             ||||||||||||||||||||
Sbjct: 63250 gatggcctccctcaccgtct 63269

>gb|AC093320.24| Mus musculus strain C57BL/6J chromosome 1 clone rp23-45n11, complete
             sequence
          Length = 245536

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     caccacacaagcagcacacacaca 28
             ||||||||||||| ||||||||||
Sbjct: 64845 caccacacaagcaccacacacaca 64868

>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0013F10
          Length = 163095

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   tcatcaccggcgcggaggcg 186
             ||||||||||||||||||||
Sbjct: 81933 tcatcaccggcgcggaggcg 81952

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 124     ccggcggccagcaacgccaa 143
               ||||||||||||||||||||
Sbjct: 4737301 ccggcggccagcaacgccaa 4737282

>emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chromosome 4, complete
              sequence
          Length = 162090

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      cacacaagcagcacacacac 27
              ||||||||||||||||||||
Sbjct: 108022 cacacaagcagcacacacac 108041


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,040,075
Number of Sequences: 3902068
Number of extensions: 2040075
Number of successful extensions: 122929
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122304
Number of HSP's gapped (non-prelim): 625
length of query: 219
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 197
effective length of database: 17,147,199,772
effective search space: 3377998355084
effective search space used: 3377998355084
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)