ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X57407.1|TAPPSBP Wheat PsbP mRNA for 23 kDa oxygen evolving ... 220 9e-55
2ref|NM_186247.2| Oryza sativa (japonica cultivar-group), mRNA 76 3e-11
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 76 3e-11
4dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic D... 76 3e-11
5dbj|AK104722.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 3e-11
6dbj|AK065248.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 3e-11
7gb|AF052203.1|AF052203 Oryza sativa 23 kDa polypeptide of photos... 76 3e-11
8gb|AF022732.1|AF022732 Oryza sativa 23kDa polypeptide of photosy... 76 3e-11
9dbj|D49713.1|RICOSEE2 Rice OSOEE2 gene for 23 kDa polypeptide of... 76 3e-11
10gb|AY103732.1| Zea mays PCO073407 mRNA sequence 50 0.002
11gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome... 42 0.47
12ref|XM_959280.1| Neurospora crassa OR74A hypothetical protein (N... 40 1.9
13ref|XM_325009.1| Neurospora crassa OR74A hypothetical protein (N... 40 1.9
14ref|XM_867925.1| PREDICTED: Bos taurus similar to Carbohydrate s... 40 1.9
15emb|AL023693.25|HS32B1 Human DNA sequence from clone RP1-32B1 on... 40 1.9
16gb|AC067751.7| Homo sapiens chromosome 10 clone RP11-357K14, com... 40 1.9
17dbj|AK171278.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 1.9
18dbj|AK155135.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 1.9
19dbj|AK016561.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 1.9
20dbj|AK089459.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 1.9
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
22gb|AC008160.11|AC008160 Mus musculus, clone 187_J_17, complete s... 40 1.9
23gb|AF073309.1|AF073309 Mus musculus nonsyndromic hearing impairm... 40 1.9
24gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 1.9
25emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311... 40 1.9
26gb|BC086618.1| Mus musculus cDNA clone IMAGE:5716858, containing... 40 1.9
27gb|BC051962.1| Mus musculus cDNA clone IMAGE:5716858, containing... 40 1.9
28ref|NM_018769.1| Mus musculus deafness, autosomal dominant 5 hom... 40 1.9
29gb|AC153819.5| Mus musculus 6 BAC RP23-445H14 (Roswell Park Canc... 40 1.9
30gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 40 1.9
31gb|AC158553.13| Mus musculus chromosome 8, clone RP23-349E13, co... 38 7.3
32gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 38 7.3
33gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome... 38 7.3
34ref|XM_612277.2| PREDICTED: Bos taurus similar to Nonsyndromic h... 38 7.3
35ref|XM_953852.1| Neurospora crassa OR74A hypothetical protein (N... 38 7.3
36ref|XM_330355.1| Neurospora crassa OR74A hypothetical protein (N... 38 7.3
37gb|DQ249342.1| Streptomyces hygroscopicus subsp. duamyceticus st... 38 7.3
38gb|AC026866.8| Homo sapiens BAC clone RP11-420P20 from 7, comple... 38 7.3
39ref|XM_848863.1| PREDICTED: Canis familiaris similar to Nonsyndr... 38 7.3
40gb|AY194290.1| Equus caballus hearing impairment protein DFNA5 m... 38 7.3
41gb|AC102542.8| Mus musculus, clone RP23-110O23, complete sequence 38 7.3
42gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 38 7.3
43emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4,... 38 7.3
44emb|AL591440.7| Mouse DNA sequence from clone RP23-136K12 on chr... 38 7.3
45gb|AC000400.1| Genomic sequence from Mouse 11, complete sequence 38 7.3
46emb|BX323579.20| Zebrafish DNA sequence from clone DKEYP-79E11 i... 38 7.3
47gb|AC092172.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.3
48dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
49dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
50dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
51dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
52gb|AC154682.2| Mus musculus BAC clone RP24-315N18 from chromosom... 38 7.3
53dbj|AB032245.1| Cucumis sativus psbP mRNA for 23kDa polypeptide ... 38 7.3
54gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 7.3
55dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
56dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
57dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
58dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
59dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
60emb|AL928977.10| Zebrafish DNA sequence from clone DKEY-24D19 in... 38 7.3
61dbj|AB110443.1| Oryza sativa (indica cultivar-group) Rf-1 gene f... 38 7.3
62gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.3
63emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa... 38 7.3
64emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4,... 38 7.3
65gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete... 38 7.3 
>emb|X57407.1|TAPPSBP Wheat PsbP mRNA for 23 kDa oxygen evolving protein of photosystem
           II
          Length = 967

 Score =  220 bits (111), Expect = 9e-55
 Identities = 120/123 (97%)
 Strand = Plus / Plus

                                                                       
Query: 30  taaacagcagcgagcaatggcgtccacctcctgcttcctccaccagtccaccgcgcgcct 89
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   taaacagcagcgagcaatggcgtccacctcctgcttcctccaccagtccaccgcgcgcct 62

                                                                       
Query: 90  ggctgcctcggcgcgccctgctcccgccgtcgggcgcacccagctgttcgtctgcaaggc 149
           ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 63  ggccgcctcggcgcgccctgcgcccgccgtcgggcgcacccagcttttcgtctgcaaggc 122

              
Query: 150 gca 152
           |||
Sbjct: 123 gca 125
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>ref|NM_186247.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1114

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 43  gcaatggcgtccacctcctgcttcctccaccagtccac 80
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gcaatggcgtccacctcctgcttcctccaccagtccac 144
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                     
Query: 43      gcaatggcgtccacctcctgcttcctccaccagtccac 80
               ||||||||||||||||||||||||||||||||||||||
Sbjct: 2170384 gcaatggcgtccacctcctgcttcctccaccagtccac 2170347



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 81      cgcgcgcctggctgcctcg 99
               |||||||||||||||||||
Sbjct: 5959991 cgcgcgcctggctgcctcg 5959973
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>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1351_C05
          Length = 112465

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                   
Query: 43    gcaatggcgtccacctcctgcttcctccaccagtccac 80
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 38286 gcaatggcgtccacctcctgcttcctccaccagtccac 38249
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>dbj|AK104722.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B02, full
           insert sequence
          Length = 1078

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 43  gcaatggcgtccacctcctgcttcctccaccagtccac 80
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 63  gcaatggcgtccacctcctgcttcctccaccagtccac 100
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>dbj|AK065248.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J02, full
           insert sequence
          Length = 1114

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 43  gcaatggcgtccacctcctgcttcctccaccagtccac 80
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gcaatggcgtccacctcctgcttcctccaccagtccac 144
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>gb|AF052203.1|AF052203 Oryza sativa 23 kDa polypeptide of photosystem II mRNA, complete
           cds
          Length = 1107

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 43  gcaatggcgtccacctcctgcttcctccaccagtccac 80
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 82  gcaatggcgtccacctcctgcttcctccaccagtccac 119
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>gb|AF022732.1|AF022732 Oryza sativa 23kDa polypeptide of photosystem II mRNA, complete cds
          Length = 1031

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 43  gcaatggcgtccacctcctgcttcctccaccagtccac 80
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gcaatggcgtccacctcctgcttcctccaccagtccac 102
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>dbj|D49713.1|RICOSEE2 Rice OSOEE2 gene for 23 kDa polypeptide of photosystem II,
          complete cds
          Length = 1008

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 43 gcaatggcgtccacctcctgcttcctccaccagtccac 80
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 27 gcaatggcgtccacctcctgcttcctccaccagtccac 64
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>gb|AY103732.1| Zea mays PCO073407 mRNA sequence
          Length = 1083

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 42/47 (89%), Gaps = 3/47 (6%)
 Strand = Plus / Plus

                                                          
Query: 46  atggcgtccacctcctgct---tcctccaccagtccaccgcgcgcct 89
           |||||||||||||||||||   ||||||||||||| ||||| |||||
Sbjct: 70  atggcgtccacctcctgctgcctcctccaccagtcaaccgcccgcct 116
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>gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome 8, complete sequence
          Length = 188068

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 52    tccacctcctgcttcctccac 72
             |||||||||||||||||||||
Sbjct: 81388 tccacctcctgcttcctccac 81408
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>ref|XM_959280.1| Neurospora crassa OR74A hypothetical protein (NCU00830.1) partial
           mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  cctgcttcctccaccagtcc 78
           ||||||||||||||||||||
Sbjct: 110 cctgcttcctccaccagtcc 129
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>ref|XM_325009.1| Neurospora crassa OR74A hypothetical protein (NCU00830.1) partial
           mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  cctgcttcctccaccagtcc 78
           ||||||||||||||||||||
Sbjct: 110 cctgcttcctccaccagtcc 129
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>ref|XM_867925.1| PREDICTED: Bos taurus similar to Carbohydrate sulfotransferase 2
           (N-acetylglucosamine 6-O-sulfotransferase 1)
           (GlcNAc6ST-1) (Gn6st-1)
           (Galactose/N-acetylglucosamine/N-acetylglucosamine
           6-O-sulfotransferase 2) (GST-2) (LOC615978), mRNA
          Length = 1723

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 100 gcgcgccctgctcccgccgt 119
           ||||||||||||||||||||
Sbjct: 78  gcgcgccctgctcccgccgt 97
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>emb|AL023693.25|HS32B1 Human DNA sequence from clone RP1-32B1 on chromosome 6q22.33-23.3
              Contains the MYB gene for v-myb myeloblastosis viral
              oncogene homolog (avian), 2 novel genes, the 3' end of a
              novel protein and a CpG island, complete sequence
          Length = 188287

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     cctcctgcttcctccaccag 75
              ||||||||||||||||||||
Sbjct: 167015 cctcctgcttcctccaccag 166996
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>gb|AC067751.7| Homo sapiens chromosome 10 clone RP11-357K14, complete sequence
          Length = 180882

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tccacctcctgcttcctcca 71
              ||||||||||||||||||||
Sbjct: 171104 tccacctcctgcttcctcca 171085
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>dbj|AK171278.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630324L02
           product:deafness, autosomal dominant 5 homolog (human),
           full insert sequence
          Length = 2133

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 435 cgtccacctcctgcttcctc 416
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>dbj|AK155135.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630203F04
           product:Nonsyndromic hearing impairment protein 5
           homolog [Mus musculus], full insert sequence
          Length = 4382

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 415 cgtccacctcctgcttcctc 396
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>dbj|AK016561.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932441K13 product:deafness, autosomal
           dominant 5 homolog (human), full insert sequence
          Length = 2500

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 804 cgtccacctcctgcttcctc 785
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>dbj|AK089459.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730034N01
           product:deafness, autosomal dominant 5 homolog (human),
           full insert sequence
          Length = 2934

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 423 cgtccacctcctgcttcctc 404
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 13      tcctagctaacctaagctaaacag 36
               ||||||||||||||||| ||||||
Sbjct: 1046714 tcctagctaacctaagccaaacag 1046737



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 81       cgcgcgcctggctgcctcg 99
                |||||||||||||||||||
Sbjct: 22022647 cgcgcgcctggctgcctcg 22022629



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 81       cgcgcgcctggctgcctcg 99
                |||||||||||||||||||
Sbjct: 22014117 cgcgcgcctggctgcctcg 22014099
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>gb|AC008160.11|AC008160 Mus musculus, clone 187_J_17, complete sequence
          Length = 206383

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     cgtccacctcctgcttcctc 69
              ||||||||||||||||||||
Sbjct: 199985 cgtccacctcctgcttcctc 199966
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>gb|AF073309.1|AF073309 Mus musculus nonsyndromic hearing impairment protein (DFNA5) mRNA,
           complete cds
          Length = 2141

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 437 cgtccacctcctgcttcctc 418
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 13      tcctagctaacctaagctaaacag 36
               ||||||||||||||||| ||||||
Sbjct: 1046714 tcctagctaacctaagccaaacag 1046737



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 81       cgcgcgcctggctgcctcg 99
                |||||||||||||||||||
Sbjct: 21950992 cgcgcgcctggctgcctcg 21950974



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 81       cgcgcgcctggctgcctcg 99
                |||||||||||||||||||
Sbjct: 21942462 cgcgcgcctggctgcctcg 21942444
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>emb|BX000506.4|CNS08CDW Oryza sativa chromosome 12, . BAC OJ1311_G04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 97056

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 13    tcctagctaacctaagctaaacag 36
             ||||||||||||||||| ||||||
Sbjct: 41985 tcctagctaacctaagccaaacag 42008
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>gb|BC086618.1| Mus musculus cDNA clone IMAGE:5716858, containing frame-shift
           errors
          Length = 2216

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 496 cgtccacctcctgcttcctc 477
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>gb|BC051962.1| Mus musculus cDNA clone IMAGE:5716858, containing frame-shift
           errors
          Length = 2216

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 496 cgtccacctcctgcttcctc 477
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>ref|NM_018769.1| Mus musculus deafness, autosomal dominant 5 homolog (human)
           (Dfna5h), mRNA
          Length = 2141

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 437 cgtccacctcctgcttcctc 418
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>gb|AC153819.5| Mus musculus 6 BAC RP23-445H14 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 199780

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    cgtccacctcctgcttcctc 69
             ||||||||||||||||||||
Sbjct: 44052 cgtccacctcctgcttcctc 44033
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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 73      cagtccaccgcgcgcctggc 92
               ||||||||||||||||||||
Sbjct: 2465864 cagtccaccgcgcgcctggc 2465883
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>gb|AC158553.13| Mus musculus chromosome 8, clone RP23-349E13, complete sequence
          Length = 213309

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 63     cttcctccaccagtccacc 81
              |||||||||||||||||||
Sbjct: 115438 cttcctccaccagtccacc 115420
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 39      gcgagcaatggcgtccacctcct 61
               ||||||||||||||||| |||||
Sbjct: 1090933 gcgagcaatggcgtccaactcct 1090911
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>gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1004_F02
             map C8, complete sequence
          Length = 116304

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    cttcctccaccagtccacc 81
             |||||||||||||||||||
Sbjct: 52507 cttcctccaccagtccacc 52525
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>ref|XM_612277.2| PREDICTED: Bos taurus similar to Nonsyndromic hearing impairment
           protein 5 (Inversely correlated with estrogen receptor
           expression 1) (ICERE-1) (LOC533023), mRNA
          Length = 408

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  gtccacctcctgcttcctc 69
           |||||||||||||||||||
Sbjct: 372 gtccacctcctgcttcctc 354
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>ref|XM_953852.1| Neurospora crassa OR74A hypothetical protein (NCU09706.1) partial
            mRNA
          Length = 2571

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 54   cacctcctgcttcctccac 72
            |||||||||||||||||||
Sbjct: 2469 cacctcctgcttcctccac 2451
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>ref|XM_330355.1| Neurospora crassa OR74A hypothetical protein (NCU09706.1) partial
            mRNA
          Length = 2571

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 54   cacctcctgcttcctccac 72
            |||||||||||||||||||
Sbjct: 2469 cacctcctgcttcctccac 2451
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>gb|DQ249342.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427 unknown
             polyketide biosynthetic gene cluster, partial sequence;
             and AHBA biosynthesis gene cluster, complete sequence
          Length = 55488

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 103   cgccctgctcccgccgtcg 121
             |||||||||||||||||||
Sbjct: 10657 cgccctgctcccgccgtcg 10675
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>gb|AC026866.8| Homo sapiens BAC clone RP11-420P20 from 7, complete sequence
          Length = 179438

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     ctgcttcctccaccagtcc 78
              |||||||||||||||||||
Sbjct: 152615 ctgcttcctccaccagtcc 152633
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>ref|XM_848863.1| PREDICTED: Canis familiaris similar to Nonsyndromic hearing
           impairment protein 5 (Inversely correlated with estrogen
           receptor expression 1) (ICERE-1) (LOC611223), mRNA
          Length = 1512

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  gtccacctcctgcttcctc 69
           |||||||||||||||||||
Sbjct: 396 gtccacctcctgcttcctc 378
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>gb|AY194290.1| Equus caballus hearing impairment protein DFNA5 mRNA, complete cds
          Length = 2219

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  gtccacctcctgcttcctc 69
           |||||||||||||||||||
Sbjct: 413 gtccacctcctgcttcctc 395
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>gb|AC102542.8| Mus musculus, clone RP23-110O23, complete sequence
          Length = 270695

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     gtccacctcctgcttcctc 69
              |||||||||||||||||||
Sbjct: 216477 gtccacctcctgcttcctc 216459
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 78      caccgcgcgcctggctgcc 96
               |||||||||||||||||||
Sbjct: 2358082 caccgcgcgcctggctgcc 2358100
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>emb|AL731619.3|OSJN00267 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084N21,
             complete sequence
          Length = 143093

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    cgcgcgcctggctgcctcg 99
             |||||||||||||||||||
Sbjct: 38749 cgcgcgcctggctgcctcg 38731
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>emb|AL591440.7| Mouse DNA sequence from clone RP23-136K12 on chromosome 11 Contains the
              Crk gene for v-crk sarcoma virus CT10 oncogene homolog
              (avian), the Myo1c gene for myosin IC, the Pps gene for
              putative phosphatase, the Pitpn gene for
              phosphatidylinositol transfer protein, a cytochrome c
              oxidase, subunit VIIc (Cox7c) pseudogene, a novel gene, the
              3' end of the gene for a novel protein similar to  solute
              carrier family 43 member 1 Slc43a1 and five CpG islands,
              complete sequence
          Length = 157466

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     gctaaacagcagcgagcaa 46
              |||||||||||||||||||
Sbjct: 150900 gctaaacagcagcgagcaa 150918
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>gb|AC000400.1| Genomic sequence from Mouse 11, complete sequence
          Length = 78748

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    gctaaacagcagcgagcaa 46
             |||||||||||||||||||
Sbjct: 39247 gctaaacagcagcgagcaa 39229
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>emb|BX323579.20| Zebrafish DNA sequence from clone DKEYP-79E11 in linkage group 14,
             complete sequence
          Length = 120579

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    cacctcctgcttcctccac 72
             |||||||||||||||||||
Sbjct: 56110 cacctcctgcttcctccac 56128
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>gb|AC092172.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0014J14, complete sequence
          Length = 191397

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    cttcctccaccagtccacc 81
             |||||||||||||||||||
Sbjct: 21247 cttcctccaccagtccacc 21265
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 81       cgcgcgcctggctgcctcg 99
                |||||||||||||||||||
Sbjct: 18822839 cgcgcgcctggctgcctcg 18822821



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     cgcgcgcctggctgcctcg 99
              |||||||||||||||||||
Sbjct: 442437 cgcgcgcctggctgcctcg 442419
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 63      cttcctccaccagtccacc 81
               |||||||||||||||||||
Sbjct: 7195889 cttcctccaccagtccacc 7195907
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 81      cgcgcgcctggctgcctcg 99
               |||||||||||||||||||
Sbjct: 8352738 cgcgcgcctggctgcctcg 8352756
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 81      cgcgcgcctggctgcctcg 99
               |||||||||||||||||||
Sbjct: 6374070 cgcgcgcctggctgcctcg 6374052
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>gb|AC154682.2| Mus musculus BAC clone RP24-315N18 from chromosome 14, complete sequence
          Length = 171851

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     gtccacctcctgcttcctc 69
              |||||||||||||||||||
Sbjct: 150047 gtccacctcctgcttcctc 150065
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>dbj|AB032245.1| Cucumis sativus psbP mRNA for 23kDa polypeptide of the
          oxygen-evolving complex of photosystem II, complete cds
          Length = 1023

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 44 caatggcgtccacctcctgcttcctccacca 74
          ||||||| ||||||||||| ||||| |||||
Sbjct: 13 caatggcttccacctcctgtttccttcacca 43
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 100     gcgcgccctgctcccgccg 118
               |||||||||||||||||||
Sbjct: 4490322 gcgcgccctgctcccgccg 4490304
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>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0515G01
          Length = 175072

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     cgcgcgcctggctgcctcg 99
              |||||||||||||||||||
Sbjct: 145136 cgcgcgcctggctgcctcg 145118
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>dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0008C11
          Length = 157205

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    cgcgcgcctggctgcctcg 99
             |||||||||||||||||||
Sbjct: 15161 cgcgcgcctggctgcctcg 15143
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>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1136_A05
          Length = 120823

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     cgcgcgcctggctgcctcg 99
              |||||||||||||||||||
Sbjct: 102439 cgcgcgcctggctgcctcg 102421
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>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OSJNBa0011N12
          Length = 158586

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 81   cgcgcgcctggctgcctcg 99
            |||||||||||||||||||
Sbjct: 5588 cgcgcgcctggctgcctcg 5606
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>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0090H18
          Length = 174842

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 81     cgcgcgcctggctgcctcg 99
              |||||||||||||||||||
Sbjct: 129409 cgcgcgcctggctgcctcg 129427
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>emb|AL928977.10| Zebrafish DNA sequence from clone DKEY-24D19 in linkage group 20,
             complete sequence
          Length = 165014

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 61    tgcttcctccaccagtcca 79
             |||||||||||||||||||
Sbjct: 30123 tgcttcctccaccagtcca 30141
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>dbj|AB110443.1| Oryza sativa (indica cultivar-group) Rf-1 gene for fertility restorer,
             PPR794, PPR683, PPR762 genes for hypothetical protein,
             complete cds
          Length = 76363

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    cgcgcgcctggctgcctcg 99
             |||||||||||||||||||
Sbjct: 59087 cgcgcgcctggctgcctcg 59105
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 63      cttcctccaccagtccacc 81
               |||||||||||||||||||
Sbjct: 7199185 cttcctccaccagtccacc 7199203
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>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 138308

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     cgcgcgcctggctgcctcg 99
              |||||||||||||||||||
Sbjct: 128775 cgcgcgcctggctgcctcg 128757



 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     cgcgcgcctggctgcctcg 99
              |||||||||||||||||||
Sbjct: 120245 cgcgcgcctggctgcctcg 120227
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>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13,
             complete sequence
          Length = 130249

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    cgcgcgcctggctgcctcg 99
             |||||||||||||||||||
Sbjct: 81189 cgcgcgcctggctgcctcg 81171
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>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence
          Length = 53591

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 85    cgcctggctgcctcggcgcgccc 107
             |||||||| ||||||||||||||
Sbjct: 42971 cgcctggcagcctcggcgcgccc 42993


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,180,193
Number of Sequences: 3902068
Number of extensions: 1180193
Number of successful extensions: 78166
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77306
Number of HSP's gapped (non-prelim): 859
length of query: 152
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 131
effective length of database: 17,151,101,840
effective search space: 2246794341040
effective search space used: 2246794341040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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