ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF024666.2| Corynebacterium striatum strain M82B R-plasmid pT... 42 0.67
2gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete... 40 2.6
3gb|AC140302.2| Mus musculus BAC clone RP24-321I14 from chromosom... 40 2.6
4gb|AC109611.24| Mus musculus strain C57BL/6J clone rp23-342n8 ma... 40 2.6
5gb|AC122566.14| Mus musculus chromosome 5, clone RP24-259O11, co... 40 2.6
6gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, r... 40 2.6
7gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10... 40 2.6
8gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 2.6

>gb|AF024666.2| Corynebacterium striatum strain M82B R-plasmid pTP10, complete sequence
          Length = 51409

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    accggcaccacagaccacacc 41
             |||||||||||||||||||||
Sbjct: 33157 accggcaccacagaccacacc 33137



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>gb|AC092187.2| Drosophila melanogaster clone BACR23N06, complete sequence
          Length = 164920

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    gctcctccagcttcagctga 80
             ||||||||||||||||||||
Sbjct: 53370 gctcctccagcttcagctga 53389



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>gb|AC140302.2| Mus musculus BAC clone RP24-321I14 from chromosome 5, complete
            sequence
          Length = 174372

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   acaactcaactcaaattaat 103
            ||||||||||||||||||||
Sbjct: 8087 acaactcaactcaaattaat 8068



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>gb|AC109611.24| Mus musculus strain C57BL/6J clone rp23-342n8 map 5, complete sequence
          Length = 198992

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     agctacaactcaactcaaat 99
              ||||||||||||||||||||
Sbjct: 192766 agctacaactcaactcaaat 192747



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>gb|AC122566.14| Mus musculus chromosome 5, clone RP24-259O11, complete sequence
          Length = 146459

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    acaactcaactcaaattaat 103
             ||||||||||||||||||||
Sbjct: 42851 acaactcaactcaaattaat 42870



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>gb|AC007765.1|AC007765 Drosophila melanogaster, chromosome 2L, region 23C1-23C5, P1 clones
             DS02190 and DS00906, complete sequence
          Length = 163403

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    gctcctccagcttcagctga 80
             ||||||||||||||||||||
Sbjct: 31554 gctcctccagcttcagctga 31573



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>gb|AE003581.4| Drosophila melanogaster chromosome 2L, section 10 of 83 of the complete
              sequence
          Length = 314957

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     gctcctccagcttcagctga 80
              ||||||||||||||||||||
Sbjct: 169146 gctcctccagcttcagctga 169127



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>gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone rp23-224j9, complete
             sequence
          Length = 258789

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    agctacaactcaactcaaat 99
             ||||||||||||||||||||
Sbjct: 85598 agctacaactcaactcaaat 85579


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,583,624
Number of Sequences: 3902068
Number of extensions: 1583624
Number of successful extensions: 97960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97950
Number of HSP's gapped (non-prelim): 10
length of query: 209
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 187
effective length of database: 17,147,199,772
effective search space: 3206526357364
effective search space used: 3206526357364
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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