ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet80g11 |
|---|---|
| Clone Library Name | barley_pub |
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 56.6 bits (135), Expect = 2e-08 Identities = 27/42 (64%), Positives = 27/42 (64%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 TLRQGVVVIT ETGKWHVVMACRDFLKA Sbjct: 71 TLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKA 112
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 56.6 bits (135), Expect = 2e-08 Identities = 27/42 (64%), Positives = 27/42 (64%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 TLRQGVVVIT ETGKWHVVMACRDFLKA Sbjct: 71 TLRQGVVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKA 112
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 52.4 bits (124), Expect = 4e-07 Identities = 24/42 (57%), Positives = 26/42 (61%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 TLR+G VVIT ETGKWHV+MACRDFLKA Sbjct: 83 TLRKGSVVITGASSGLGLATAKALAETGKWHVIMACRDFLKA 124
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 52.0 bits (123), Expect = 5e-07 Identities = 23/42 (54%), Positives = 26/42 (61%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 TLR+G V+IT ETGKWHV+MACRDFLKA Sbjct: 82 TLRKGSVIITGASSGLGLATAKALAETGKWHVIMACRDFLKA 123
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 51.6 bits (122), Expect = 6e-07 Identities = 23/42 (54%), Positives = 26/42 (61%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 TLR+G VV+T ETGKWHV+MACRDFLKA Sbjct: 89 TLRKGNVVVTGASSGLGLATAKALAETGKWHVIMACRDFLKA 130
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 49.3 bits (116), Expect = 3e-06 Identities = 22/42 (52%), Positives = 26/42 (61%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 TLR+G VVIT E+GKWHV+MACRD+LKA Sbjct: 83 TLRKGNVVITGASSGLGLATAKALAESGKWHVIMACRDYLKA 124
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 48.9 bits (115), Expect = 4e-06 Identities = 22/42 (52%), Positives = 26/42 (61%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 TLR+G VV+T ETGKW+V+MACRDFLKA Sbjct: 85 TLRKGNVVVTGASSGLGLATAKALAETGKWNVIMACRDFLKA 126
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 47.0 bits (110), Expect = 1e-05 Identities = 22/37 (59%), Positives = 22/37 (59%) Frame = +3 Query: 18 VVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 VVVIT ETGKWHVVMACRDFLKA Sbjct: 1 VVVITGASSGLGLAAAKALAETGKWHVVMACRDFLKA 37
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 45.8 bits (107), Expect = 3e-05 Identities = 20/42 (47%), Positives = 24/42 (57%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 T R+G VIT +TGKWHV+MACR+FLKA Sbjct: 86 TERKGTAVITGASSGLGLATAKALADTGKWHVIMACRNFLKA 127
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/41 (43%), Positives = 23/41 (56%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLK 125 T+R G +IT E+GKWHV+MACRD+LK Sbjct: 79 TVRTGNAIITGASSGLGLATAKALAESGKWHVIMACRDYLK 119
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 41.6 bits (96), Expect = 6e-04 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 T + +IT +TG+WHV+MACRDFLKA Sbjct: 142 TATKSTCIITGASSGLGLATAKALADTGEWHVIMACRDFLKA 183
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +3 Query: 3 TLRQGVVVITXXXXXXXXXXXXXXXETGKWHVVMACRDFLKA 128 T ++ +IT TG+WHVVMACRDFLKA Sbjct: 82 TQQKQTAIITGASSGLGLNAAKALAATGEWHVVMACRDFLKA 123 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,749,919 Number of Sequences: 219361 Number of extensions: 42610 Number of successful extensions: 47 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 47 length of database: 80,573,946 effective HSP length: 18 effective length of database: 76,625,448 effective search space used: 1839010752 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
