ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet80f12 |
|---|---|
| Clone Library Name | barley_pub |
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 124 bits (311), Expect = 6e-29 Identities = 58/61 (95%), Positives = 59/61 (96%) Frame = +2 Query: 92 LHQTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 271 LHQTTSFLGTAPRRD+LVR VGD GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS Sbjct: 6 LHQTTSFLGTAPRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 65 Query: 272 Y 274 Y Sbjct: 66 Y 66
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 89.4 bits (220), Expect = 2e-18 Identities = 44/62 (70%), Positives = 52/62 (83%), Gaps = 3/62 (4%) Frame = +2 Query: 98 QTTSFLGTA--PRRDDLVRSVGDFG-GRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTP 268 Q ++F+G A +++ +R VG+FG GRITMRRTVKSAPQSIWYG DRPKYLGPFSEQTP Sbjct: 7 QQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGPFSEQTP 66 Query: 269 SY 274 SY Sbjct: 67 SY 68
>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 205 Score = 88.6 bits (218), Expect = 4e-18 Identities = 38/48 (79%), Positives = 45/48 (93%) Frame = +2 Query: 131 RDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSY 274 +++LVR VG GGR++MRRT+KSAP+SIWYGPDRPKYLGPFSEQTPSY Sbjct: 20 QNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSY 67
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 86.3 bits (212), Expect = 2e-17 Identities = 43/62 (69%), Positives = 49/62 (79%), Gaps = 3/62 (4%) Frame = +2 Query: 98 QTTSFLGTAPRR--DDLVRSVGDFGG-RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTP 268 Q ++F G + ++LVR +G FGG R TMRRTVKSAPQSIWYG DRPKYLGPFSEQTP Sbjct: 7 QQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTP 66 Query: 269 SY 274 SY Sbjct: 67 SY 68
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 85.9 bits (211), Expect = 2e-17 Identities = 40/49 (81%), Positives = 44/49 (89%), Gaps = 1/49 (2%) Frame = +2 Query: 131 RDDLVRSVGDF-GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSY 274 +++LVR +G F GGR TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSY Sbjct: 20 QNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSY 68
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 84.3 bits (207), Expect = 7e-17 Identities = 40/62 (64%), Positives = 49/62 (79%), Gaps = 3/62 (4%) Frame = +2 Query: 98 QTTSFLGTA---PRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTP 268 Q++S G P++++LV+ VG RITMRRTV+SAP+SIWYGPDRPKYLGPFSE TP Sbjct: 8 QSSSLAGQTLLRPQQNELVKKVGTAQARITMRRTVRSAPESIWYGPDRPKYLGPFSEGTP 67 Query: 269 SY 274 SY Sbjct: 68 SY 69
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 84.0 bits (206), Expect = 9e-17 Identities = 40/61 (65%), Positives = 48/61 (78%), Gaps = 2/61 (3%) Frame = +2 Query: 98 QTTSFLGTAP--RRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 271 Q+++F G +RD+LVR VG GR +MRRTVK+ PQSIWYG DRPK+LGPFSEQTPS Sbjct: 7 QSSAFAGQTALKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPFSEQTPS 66 Query: 272 Y 274 Y Sbjct: 67 Y 67
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 80.9 bits (198), Expect = 8e-16 Identities = 40/62 (64%), Positives = 47/62 (75%), Gaps = 3/62 (4%) Frame = +2 Query: 98 QTTSFLGTAPRR--DDLVRSVGDFG-GRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTP 268 Q ++F G R ++ +R G+FG R TMRRTVKSAP+SIWYGPDRPKYLGPFSEQ P Sbjct: 7 QQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIWYGPDRPKYLGPFSEQIP 66 Query: 269 SY 274 SY Sbjct: 67 SY 68
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 79.7 bits (195), Expect = 2e-15 Identities = 35/37 (94%), Positives = 36/37 (97%) Frame = +2 Query: 164 GGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSY 274 GGR+TMRRTVKSAPQSIWYG DRPKYLGPFSEQTPSY Sbjct: 4 GGRVTMRRTVKSAPQSIWYGEDRPKYLGPFSEQTPSY 40
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 77.0 bits (188), Expect = 1e-14 Identities = 38/62 (61%), Positives = 47/62 (75%), Gaps = 3/62 (4%) Frame = +2 Query: 98 QTTSFLGTAPRR--DDLVRSVGDFGG-RITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTP 268 Q ++F G + ++LV +G GG R++MRRTVKSAP SIWYGPDRPKYLGPFS+Q P Sbjct: 7 QQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGPFSDQIP 66 Query: 269 SY 274 SY Sbjct: 67 SY 68
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 56.6 bits (135), Expect = 2e-08 Identities = 29/50 (58%), Positives = 36/50 (72%), Gaps = 3/50 (6%) Frame = +2 Query: 134 DDLVRSV-GDFGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSY 274 ++L R V G+ R+TMRRTV + S IWYG DRPK+LGPFS +TPSY Sbjct: 22 NELSRKVLGNVEARVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSY 71
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 56.2 bits (134), Expect = 2e-08 Identities = 32/58 (55%), Positives = 37/58 (63%), Gaps = 2/58 (3%) Frame = +2 Query: 107 SFLGTAPRRDDLVRSVGDFGGRITMRRTV-KSAPQSI-WYGPDRPKYLGPFSEQTPSY 274 SF G A + + GRITMR+ V KSAP S WYGPDR KYLGPFS ++PSY Sbjct: 12 SFAGQAVKLSPSASEISG-NGRITMRKAVAKSAPSSSPWYGPDRVKYLGPFSGESPSY 68
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 55.8 bits (133), Expect = 3e-08 Identities = 30/46 (65%), Positives = 33/46 (71%), Gaps = 5/46 (10%) Frame = +2 Query: 152 VGDFG-GRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSY 274 VG FG GRITMR+TV +A S WYGPDR KYLGPFS + PSY Sbjct: 20 VGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSY 65
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 53.5 bits (127), Expect = 1e-07 Identities = 24/37 (64%), Positives = 29/37 (78%), Gaps = 1/37 (2%) Frame = +2 Query: 167 GRITMRRTVKS-APQSIWYGPDRPKYLGPFSEQTPSY 274 GR++MR+TVK+ S WYGPDR KYLGPFS + PSY Sbjct: 31 GRVSMRKTVKAPVSDSPWYGPDRVKYLGPFSGEAPSY 67
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 53.1 bits (126), Expect = 2e-07 Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 7/65 (10%) Frame = +2 Query: 101 TTSFLGTA---PRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSE 259 ++SF G A P ++ R+ G++TMR+TV A S WYGPDR KYLGPFS Sbjct: 10 SSSFAGKAVNVPSSSEITRN-----GKVTMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSG 64 Query: 260 QTPSY 274 + PSY Sbjct: 65 EAPSY 69
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 52.4 bits (124), Expect = 3e-07 Identities = 24/38 (63%), Positives = 29/38 (76%), Gaps = 2/38 (5%) Frame = +2 Query: 167 GRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSY 274 GR++MR+TV A S WYGPDR KYLGPFS ++PSY Sbjct: 31 GRVSMRKTVAKPVASSSPWYGPDRVKYLGPFSGESPSY 68
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 52.0 bits (123), Expect = 4e-07 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = +2 Query: 101 TTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTP 268 ++SF G A + + G++TMR+TV A S WYGPDR KYLGPFS + P Sbjct: 10 SSSFAGKAVKLSSSSSEITG-NGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAP 68 Query: 269 SY 274 SY Sbjct: 69 SY 70
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 51.6 bits (122), Expect = 5e-07 Identities = 24/40 (60%), Positives = 29/40 (72%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSY 274 G++TMR+TV A S WYGPDR KYLGPFS ++PSY Sbjct: 31 GKVTMRKTVTKAKPLSSGSPWYGPDRVKYLGPFSGESPSY 70
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 51.2 bits (121), Expect = 7e-07 Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSY 274 GR+TMR+T A S WYGPDR KYLGPFS ++PSY Sbjct: 31 GRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSY 70
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 50.8 bits (120), Expect = 9e-07 Identities = 29/62 (46%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Frame = +2 Query: 101 TTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTP 268 ++SF G A + G+ G+ TMR+TV A S WYGPDR KYLGPFS + P Sbjct: 10 SSSFAGKAVNVPSSSQITGN--GKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAP 67 Query: 269 SY 274 SY Sbjct: 68 SY 69
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSY 274 G++TMR+T A S WYGPDR KYLGPFS ++PSY Sbjct: 31 GKVTMRKTASKAKTVSSGSPWYGPDRVKYLGPFSGESPSY 70
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSY 274 G++TMR+T A S WYGPDR KYLGPFS ++PSY Sbjct: 30 GKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSY 69
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSY 274 G++TMR+T A S WYGPDR KYLGPFS ++PSY Sbjct: 30 GKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSY 69
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 50.1 bits (118), Expect = 1e-06 Identities = 24/41 (58%), Positives = 30/41 (73%), Gaps = 5/41 (12%) Frame = +2 Query: 167 GRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSY 274 GRITMR+T P+++ WYGPDR KYLGPFS ++PSY Sbjct: 31 GRITMRKTA-GKPKTVQSSSPWYGPDRVKYLGPFSGESPSY 70
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 50.1 bits (118), Expect = 1e-06 Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 3/39 (7%) Frame = +2 Query: 167 GRITMRRTV---KSAPQSIWYGPDRPKYLGPFSEQTPSY 274 GR+TMR+TV K S WYG DR KYLGPFS ++PSY Sbjct: 31 GRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSY 69
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 50.1 bits (118), Expect = 1e-06 Identities = 24/39 (61%), Positives = 28/39 (71%), Gaps = 3/39 (7%) Frame = +2 Query: 167 GRITMRRTV---KSAPQSIWYGPDRPKYLGPFSEQTPSY 274 GR+TMR+TV K S WYG DR KYLGPFS ++PSY Sbjct: 31 GRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSY 69
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 50.1 bits (118), Expect = 1e-06 Identities = 25/38 (65%), Positives = 29/38 (76%), Gaps = 2/38 (5%) Frame = +2 Query: 167 GRITMRRTVK-SAPQ-SIWYGPDRPKYLGPFSEQTPSY 274 GR+TMR+TVK + P S WYG DR KYLGPFS + PSY Sbjct: 31 GRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSY 68
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/38 (60%), Positives = 28/38 (73%), Gaps = 2/38 (5%) Frame = +2 Query: 167 GRITMRRTVKS--APQSIWYGPDRPKYLGPFSEQTPSY 274 GR++MR+TV + S WYGPDR KYLGPFS + PSY Sbjct: 29 GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPFSGEPPSY 66
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSY 274 G+ TMR+TV A S WYGPDR KYLGPFS + PSY Sbjct: 31 GKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSY 70
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 49.7 bits (117), Expect = 2e-06 Identities = 27/59 (45%), Positives = 30/59 (50%) Frame = +2 Query: 98 QTTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSY 274 + T FLG + L V R TM +WYGPDR KYLGPFS QTPSY Sbjct: 15 KATPFLGQTKNANPLRDVVAMGSARFTMSN-------DLWYGPDRVKYLGPFSAQTPSY 66
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 48.9 bits (115), Expect = 3e-06 Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 5/41 (12%) Frame = +2 Query: 167 GRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSY 274 GR++MR+T AP+++ WYGPDR KYLGPFS + PSY Sbjct: 30 GRVSMRKT---APKTVSSGSPWYGPDRVKYLGPFSGEAPSY 67
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 48.9 bits (115), Expect = 3e-06 Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTVKSAP----QSIWYGPDRPKYLGPFSEQTPSY 274 G++TMR+T A S WYGP+R KYLGPFS ++PSY Sbjct: 31 GKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSY 70
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 48.9 bits (115), Expect = 3e-06 Identities = 25/48 (52%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +2 Query: 134 DDLVRSVGDFGGRITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSY 274 ++L R VG R+ M AP SIWYG DRP YLGPFS PSY Sbjct: 21 NELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSY 68
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 48.5 bits (114), Expect = 4e-06 Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 2/38 (5%) Frame = +2 Query: 167 GRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSY 274 GR++MR+T S WYGPDR KYLGPFS + PSY Sbjct: 11 GRVSMRKTASKTVSSGSPWYGPDRVKYLGPFSGEPPSY 48
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 48.1 bits (113), Expect = 6e-06 Identities = 23/36 (63%), Positives = 24/36 (66%) Frame = +2 Query: 167 GRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSY 274 GRITM +WYGPDR KYLGPFS QTPSY Sbjct: 41 GRITMGN-------DLWYGPDRVKYLGPFSAQTPSY 69
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 48.1 bits (113), Expect = 6e-06 Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSY 274 G+ TMR+T A S WYGPDR KYLGPFS + PSY Sbjct: 31 GKATMRKTATKAKPVSSGSPWYGPDRVKYLGPFSGEAPSY 70
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 47.4 bits (111), Expect = 1e-05 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 4/41 (9%) Frame = +2 Query: 164 GGRITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSY 274 G R TMR++ + + S WYGPDR KYLGPFS ++PSY Sbjct: 31 GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSY 71
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 47.4 bits (111), Expect = 1e-05 Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTPSY 274 G+ MR+TV A S WYGPDR KYLGPFS + PSY Sbjct: 31 GKAIMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSY 70
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%) Frame = +2 Query: 170 RITMRRTVKSAPQ-SIWYGPDRPKYLGPFSEQTPSY 274 R++MR+T + S WYGPDR KYLGPFS ++PSY Sbjct: 32 RVSMRKTAATKKVGSPWYGPDRVKYLGPFSGESPSY 67
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 45.8 bits (107), Expect = 3e-05 Identities = 21/37 (56%), Positives = 25/37 (67%), Gaps = 2/37 (5%) Frame = +2 Query: 170 RITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSY 274 + TMR+T + S WYGPDR KYLGPFS + PSY Sbjct: 22 KFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSY 58
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 45.4 bits (106), Expect = 4e-05 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 6/56 (10%) Frame = +2 Query: 125 PRRDDLVRSVGDFG-GRITMRRTV--KSAPQSI---WYGPDRPKYLGPFSEQTPSY 274 P+ + L+ G G R+TMR+ KS SI WYGPDR YLGPFS + PSY Sbjct: 26 PQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSY 81
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 45.1 bits (105), Expect = 5e-05 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 4/39 (10%) Frame = +2 Query: 170 RITMRRTVKS----APQSIWYGPDRPKYLGPFSEQTPSY 274 R TMR++ + + S WYGPDR KYLGPFS ++PSY Sbjct: 34 RFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSY 72
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 45.1 bits (105), Expect = 5e-05 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 6/56 (10%) Frame = +2 Query: 125 PRRDDLVRSVGDFG-GRITMRRTV--KSAPQSI---WYGPDRPKYLGPFSEQTPSY 274 P+ + L+ G G R+TMR+ KS SI WYGPDR YLGPFS + PSY Sbjct: 26 PQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSY 81
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 44.7 bits (104), Expect = 6e-05 Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 5/40 (12%) Frame = +2 Query: 170 RITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSY 274 R+TMR+ SA S WYGPDR YLGPFS + PSY Sbjct: 38 RVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSY 77
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 44.3 bits (103), Expect = 8e-05 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%) Frame = +2 Query: 101 TTSFLGTAPRRDDLVRSVGDFGGRITMRRTVKSAPQ----SIWYGPDRPKYLGPFSEQTP 268 ++SF G A + +GD R+ MR+T A Q S WYG DR YLGP S + P Sbjct: 10 SSSFAGKAVKNLPSSALIGD--ARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPP 67 Query: 269 SY 274 SY Sbjct: 68 SY 69
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 5/40 (12%) Frame = +2 Query: 170 RITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSY 274 R+TMR+T A S WYGPDR YLGP S + PSY Sbjct: 29 RVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSY 68
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/40 (52%), Positives = 24/40 (60%), Gaps = 5/40 (12%) Frame = +2 Query: 170 RITMRRTVKSAPQ-----SIWYGPDRPKYLGPFSEQTPSY 274 R+TMR+T A S WYGPDR YLGP S + PSY Sbjct: 29 RVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSY 68
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 41.2 bits (95), Expect = 7e-04 Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTVK----SAPQSIWYGPDRPKYLGPFSEQTPSY 274 GRITMR++ +A S WYG DR YLGP S + PSY Sbjct: 25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSY 64
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 40.8 bits (94), Expect = 0.001 Identities = 15/20 (75%), Positives = 17/20 (85%) Frame = +2 Query: 215 WYGPDRPKYLGPFSEQTPSY 274 WYGPDR K+LGPFS TP+Y Sbjct: 39 WYGPDRAKWLGPFSTNTPAY 58
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 40.8 bits (94), Expect = 0.001 Identities = 23/40 (57%), Positives = 24/40 (60%), Gaps = 4/40 (10%) Frame = +2 Query: 167 GRITMRRTV-KSAPQ---SIWYGPDRPKYLGPFSEQTPSY 274 GRITMR+T K P S WYG DR YLGP S PSY Sbjct: 28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSY 67
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 38.9 bits (89), Expect = 0.003 Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 5/40 (12%) Frame = +2 Query: 170 RITMRRTVK-----SAPQSIWYGPDRPKYLGPFSEQTPSY 274 RITMR+T ++ S WYG DR YLGP S + PSY Sbjct: 29 RITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSY 68
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 38.5 bits (88), Expect = 0.005 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = +2 Query: 197 SAPQSIWYGPDRPKYLGPFSEQTPSY 274 ++ S W+GPD KYLGPFS ++PSY Sbjct: 6 ASSSSPWHGPDGVKYLGPFSGESPSY 31
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 35.8 bits (81), Expect = 0.029 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 3/38 (7%) Frame = +2 Query: 170 RITMRRTVKSAPQSI--WYGPDRPKYLGPFSE-QTPSY 274 R T ++ + + P++ +YGPDR K+LGPFSE TP Y Sbjct: 16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEY 53
>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 32.0 bits (71), Expect = 0.42 Identities = 16/30 (53%), Positives = 23/30 (76%), Gaps = 4/30 (13%) Frame = +2 Query: 197 SAPQSI---WYGPDRPKYLGPFSEQ-TPSY 274 +AP+S +YGP+R K+LGP+SE TP+Y Sbjct: 27 AAPKSSGVEFYGPNRAKWLGPYSENATPAY 56
>MCPH1_HUMAN (Q8NEM0) Microcephalin| Length = 835 Score = 29.6 bits (65), Expect = 2.1 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -1 Query: 168 PPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACE 49 PPK R RS+RR +PR + C ++ + VAG A E Sbjct: 366 PPKEKCKRKRSTRRSIMPR--LQLCRSEGRLQHVAGPALE 403
>MCPH1_MACFA (Q5IFK1) Microcephalin| Length = 842 Score = 28.9 bits (63), Expect = 3.6 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 168 PPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACE 49 PPK R RS RR +PR + C ++ ++ +AG A E Sbjct: 366 PPKEKCKRKRSIRRSIMPR--LQLCRSEGSLQCMAGPALE 403
>ULAG_SHISS (Q3YUF5) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGTNVCVDFW 63
>ULAG_SHIFL (Q83IJ0) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGTNVCVDFW 63
>ULAG_SHIDS (Q328K5) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGTNVCVDFW 63
>ULAG_SHIBS (Q31TC3) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGTNVCVDFW 63
>ULAG_SALTY (Q7CP92) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGTNVCVDFW 63
>ULAG_SALTI (Q8XG87) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGTNVCVDFW 63
>ULAG_SALPA (Q5PJ49) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGTNVCVDFW 63
>ULAG_SALCH (Q57GK0) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGTNVCVDFW 63
>ULAG_ECOLI (P39300) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGTNVCVDFW 63
>ULAG_ECO57 (Q8XDJ6) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGTNVCVDFW 63
>MPA5A_LOLPR (Q40240) Major pollen allergen Lol p 5a precursor (Lol p Va) (Lol p| Ib) Length = 308 Score = 28.5 bits (62), Expect = 4.7 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%) Frame = +3 Query: 48 ARRQPQPPAKWPRRRC---TRRPASSAPPR 128 A RQP PP P RR + RP S +PPR Sbjct: 67 ASRQPWPPLPTPLRRTSSRSSRPPSPSPPR 96
>MCPH1_PANTR (P61593) Microcephalin| Length = 835 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -1 Query: 168 PPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACE 49 PPK R RS RR +PR + C ++ + VAG A E Sbjct: 366 PPKEKCKRKRSIRRSIMPR--LQLCRSEGRLQHVAGPALE 403
>ULAG_ECOL6 (Q8FAJ4) Probable L-ascorbate-6-phosphate lactonase ulaG (EC| 3.1.1.-) (L-ascorbate utilization protein G) Length = 354 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = -2 Query: 92 APTRPFRWWLGLPASSVRSTGGWCVCVCVW 3 AP WWLG ++S GG VCV W Sbjct: 34 APGTFAMWWLGCTGIWLKSEGGANVCVDFW 63
>MCPH1_PONPY (P61594) Microcephalin| Length = 839 Score = 28.1 bits (61), Expect = 6.1 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 168 PPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACE 49 PPK R RS RR +PR + C ++ ++ VAG A + Sbjct: 366 PPKEKCKRKRSIRRSIMPR--LQLCRSEGSLQHVAGPALQ 403
>MCPH1_COLGU (P61590) Microcephalin| Length = 841 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -1 Query: 168 PPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAGAACE 49 PPK R RS RR +PR + CS++ + +AG A E Sbjct: 365 PPKEKCKRKRSIRRSIMPR--LQLCSSEGSRQHMAGPALE 402
>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)| Length = 618 Score = 27.7 bits (60), Expect = 7.9 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -1 Query: 171 RPPKSPTLRTRSSRRGAVPRKLVVWCSADAAISLVAG 61 RPPK P T + A + VW S+ + +S V+G Sbjct: 301 RPPKPPATTTGALNHDAKELHMFVWSSSASPVSEVSG 337
>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)| (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24 (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein VP22A; C-terminal peptide] Length = 605 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/39 (41%), Positives = 17/39 (43%) Frame = -1 Query: 267 GVCSENGPRYLGRSGPYQMLWGALLTVRRMVMRPPKSPT 151 G C + GP Y SGPY V R V PP PT Sbjct: 470 GYCPQQGPCYT-HSGPYGFQPHQSYEVPRYVPHPPPPPT 507 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,411,885 Number of Sequences: 219361 Number of extensions: 597483 Number of successful extensions: 2253 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 2177 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2246 length of database: 80,573,946 effective HSP length: 67 effective length of database: 65,876,759 effective search space used: 1581042216 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
