>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete
             sequence
          Length = 139771

 Score =  147 bits (74), Expect = 1e-32
 Identities = 98/106 (92%)
 Strand = Plus / Minus

                                                                         
Query: 76    atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 135
             |||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||
Sbjct: 79852 atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 79793

                                                           
Query: 136   gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgc 181
             || ||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct: 79792 gagctcgtccgccgcgtcggcgactccggtggccgcatcaccatgc 79747

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  147 bits (74), Expect = 1e-32
 Identities = 98/106 (92%)
 Strand = Plus / Plus

                                                                            
Query: 76       atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 135
                |||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||
Sbjct: 21807964 atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 21808023

                                                              
Query: 136      gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgc 181
                || ||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct: 21808024 gagctcgtccgccgcgtcggcgactccggtggccgcatcaccatgc 21808069



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 141     cgtccgcagcgtcggcgac 159
               |||||||||||||||||||
Sbjct: 2943711 cgtccgcagcgtcggcgac 2943693

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  147 bits (74), Expect = 1e-32
 Identities = 98/106 (92%)
 Strand = Plus / Plus

                                                                            
Query: 76       atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 135
                |||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||
Sbjct: 21800993 atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 21801052

                                                              
Query: 136      gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgc 181
                || ||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct: 21801053 gagctcgtccgccgcgtcggcgactccggtggccgcatcaccatgc 21801098



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 141     cgtccgcagcgtcggcgac 159
               |||||||||||||||||||
Sbjct: 2943822 cgtccgcagcgtcggcgac 2943804

>dbj|AK066762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075I09, full
           insert sequence
          Length = 1106

 Score =  147 bits (74), Expect = 1e-32
 Identities = 98/106 (92%)
 Strand = Plus / Plus

                                                                       
Query: 76  atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 135
           |||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||
Sbjct: 52  atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 111

                                                         
Query: 136 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgc 181
           || ||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct: 112 gagctcgtccgccgcgtcggcgactccggtggccgcatcaccatgc 157

>gb|AF061577.1|AF061577 Oryza sativa chlorophyll a/b binding protein (RCABP89) mRNA,
           nuclear gene encoding chloroplast protein, complete cds
          Length = 1027

 Score =  147 bits (74), Expect = 1e-32
 Identities = 98/106 (92%)
 Strand = Plus / Plus

                                                                       
Query: 76  atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 135
           |||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||
Sbjct: 41  atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 100

                                                         
Query: 136 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgc 181
           || ||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct: 101 gagctcgtccgccgcgtcggcgactccggtggccgcatcaccatgc 146

>dbj|D00642.1|RICLHCP2 Oryza sativa (japonica cultivar-group) mRNA for type II
           light-harvesting chlorophyll a/b binding protein of
           photosystem II (LHCPII), complete cds
          Length = 989

 Score =  147 bits (74), Expect = 1e-32
 Identities = 98/106 (92%)
 Strand = Plus / Plus

                                                                       
Query: 76  atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 135
           |||||||||||||||||||||||||| ||||||||||||||||||||||| || || |||
Sbjct: 33  atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 92

                                                         
Query: 136 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgc 181
           ||| |||||||| |||||||||||| ||| ||||||||||||||||
Sbjct: 93  gacgtcgtccgccgcgtcggcgactccggtggccgcatcaccatgc 138

>gb|AF022739.1|AF022739 Oryza sativa chlorophyll a-b binding protein mRNA, complete cds
          Length = 1100

 Score =  131 bits (66), Expect = 8e-28
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                       
Query: 76  atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 135
           ||||||||||||||||||||||| || ||||||||||||||||||||||| || || |||
Sbjct: 48  atggccgcgtcggcgctgcaccaaaccaccagcttcctcggcaccgcccctcgccgggat 107

                                                         
Query: 136 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgc 181
           || ||||||||| |||||||| ||| ||| ||||||||||||||||
Sbjct: 108 gagctcgtccgccgcgtcggcaactccggtggccgcatcaccatgc 153

>emb|X68682.1|ZMLHCB Z.mays mRNA for type II light-harvesting chlorophyll a/b-binding
           protein
          Length = 1126

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 76  atggccgcgtcggcgctgcaccagacgaccagcttcctcgg 116
           ||||||||||||  |||||||||||| ||||||||||||||
Sbjct: 46  atggccgcgtcgcggctgcaccagaccaccagcttcctcgg 86



 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 cggcggccgcatcaccatgc 181
           ||||||||||||||||||||
Sbjct: 123 cggcggccgcatcaccatgc 142

>ref|XM_419622.1| PREDICTED: Gallus gallus similar to solute carrier family 22 member
            2; solute carrier family 22, member 2 (LOC421584), mRNA
          Length = 1735

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   gcaggcagccccagccaccag 71
            |||||||||||||||||||||
Sbjct: 1251 gcaggcagccccagccaccag 1231

>gb|AE005806.1| Caulobacter crescentus CB15 section 132 of 359 of the complete genome
          Length = 10111

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 141  cgtccgcagcgtcggcgacttcggcggcc 169
            |||||| |||||||||||| |||||||||
Sbjct: 7568 cgtccggagcgtcggcgacgtcggcggcc 7540

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    gcaccgccccgcggcgcgat 135
              ||||||||||||||||||||
Sbjct: 690877 gcaccgccccgcggcgcgat 690896

>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    gcgtcggcgacttcggcggc 168
              ||||||||||||||||||||
Sbjct: 329638 gcgtcggcgacttcggcggc 329619

>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    gcgtcggcgacttcggcggc 168
              ||||||||||||||||||||
Sbjct: 334291 gcgtcggcgacttcggcggc 334272

>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12
          Length = 349028

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   gcgtcggcgacttcggcggc 168
             ||||||||||||||||||||
Sbjct: 79935 gcgtcggcgacttcggcggc 79916

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 116     gcaccgccccgcggcgcgat 135
               ||||||||||||||||||||
Sbjct: 2011453 gcaccgccccgcggcgcgat 2011472

>emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment 17/24
          Length = 314250

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 151    gtcggcgacttcggcggccgcatc 174
              |||||||||||||| |||||||||
Sbjct: 130021 gtcggcgacttcggtggccgcatc 130044

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    ccccgcggcgcgatgacctc 141
              ||||||||||||||||||||
Sbjct: 428937 ccccgcggcgcgatgacctc 428918

>gb|AC158513.2| Mus musculus BAC clone RP24-404N1 from chromosome 9, complete sequence
          Length = 156478

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    atcctccagttgatctcactgagc 48
             ||||||||| ||||||||||||||
Sbjct: 90003 atcctccagatgatctcactgagc 89980

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    gcaccgccccgcggcgcgat 135
              ||||||||||||||||||||
Sbjct: 791797 gcaccgccccgcggcgcgat 791778

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     ccaccagcgaaatggccgcg 84
              ||||||||||||||||||||
Sbjct: 392001 ccaccagcgaaatggccgcg 391982

>emb|AJ234427.1|HVU234427 Hordeum vulgare partial mRNA; clone cMWG0701.uni
          Length = 312

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 162 cggcggccgcatcaccatgc 181
           ||||||||||||||||||||
Sbjct: 128 cggcggccgcatcaccatgc 147

>emb|CT486009.11| Mouse DNA sequence from clone RP24-160E3 on chromosome 9, complete
              sequence
          Length = 193947

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 25     atcctccagttgatctcactgagc 48
              ||||||||| ||||||||||||||
Sbjct: 114631 atcctccagatgatctcactgagc 114608

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 152     tcggcgacttcggcggccgc 171
               ||||||||||||||||||||
Sbjct: 1692847 tcggcgacttcggcggccgc 1692866



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 154     ggcgacttcggcggccgca 172
               |||||||||||||||||||
Sbjct: 1120403 ggcgacttcggcggccgca 1120385

>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 152     tcggcgacttcggcggccg 170
               |||||||||||||||||||
Sbjct: 1154294 tcggcgacttcggcggccg 1154312

>ref|XM_539489.2| PREDICTED: Canis familiaris similar to homeobox protein A9,
           transcript variant 1 (LOC482372), mRNA
          Length = 873

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 139 ctcgtccgcagcgtcggcg 157
           |||||||||||||||||||
Sbjct: 126 ctcgtccgcagcgtcggcg 108

>ref|XM_859604.1| PREDICTED: Canis familiaris similar to homeobox protein A9,
           transcript variant 2 (LOC482372), mRNA
          Length = 723

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 139 ctcgtccgcagcgtcggcg 157
           |||||||||||||||||||
Sbjct: 126 ctcgtccgcagcgtcggcg 108

>ref|XM_763203.1| Giardia lamblia ATCC 50803 ribonuclease H (GLP_384_17374_16316)
           partial mRNA
          Length = 1059

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 51  gcaggcagccccagccacc 69
           |||||||||||||||||||
Sbjct: 652 gcaggcagccccagccacc 634

>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 105     cagcttcctcggcaccgcc 123
               |||||||||||||||||||
Sbjct: 1777154 cagcttcctcggcaccgcc 1777136

>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 96      ccagacgaccagcttcctcggca 118
               |||||||| ||||||||||||||
Sbjct: 2079133 ccagacgatcagcttcctcggca 2079155

>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7
          Length = 349122

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     gcagccccagccaccagcg 73
              |||||||||||||||||||
Sbjct: 215359 gcagccccagccaccagcg 215341

>gb|AY026363.3| Streptomyces venezuelae decarboxylase JadN (jadN), JadX (jadX),
            NDP-hexose 2,3-dehydratase (jadO), NDP-hexose
            3-ketoreductase (jadP), NDP-glucose phosphate
            nucleotidyltransferase (jadQ), glycosyltransferase
            (jadS), NDP-hexose 4,6-dehydratase (jadT),
            NDP-4-keto-6-deoxyhexose 5-epimerase (jadU),
            NDP-4-keto-6-deoxyhexose 4-ketoreductase (jadV), JadR*
            (jadR*), and JadY (jadY) genes, complete cds; and JadZ
            (jadZ) gene, partial cds
          Length = 12543

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 153  cggcgacttcggcggccgc 171
            |||||||||||||||||||
Sbjct: 6989 cggcgacttcggcggccgc 6971

>gb|AF498372.1| Amycolatopsis mediterranei alanine dehydrogenase (ald) gene,
           complete cds
          Length = 1784

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 156 cgacttcggcggccgcatc 174
           |||||||||||||||||||
Sbjct: 868 cgacttcggcggccgcatc 886

>gb|AC096577.3| Homo sapiens BAC clone RP11-556I14 from 4, complete sequence
          Length = 156095

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    tccagttgatctcactgag 47
             |||||||||||||||||||
Sbjct: 77677 tccagttgatctcactgag 77659

>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 108     cttcctcggcaccgccccg 126
               |||||||||||||||||||
Sbjct: 2400561 cttcctcggcaccgccccg 2400579

>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 141   cgtccgcagcgtcggcgac 159
             |||||||||||||||||||
Sbjct: 81198 cgtccgcagcgtcggcgac 81180

>dbj|AK021297.1| Mus musculus 13 days embryo stomach cDNA, RIKEN full-length
           enriched library, clone:D530025C14 product:inferred:
           procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 /
           lysyl hydroxylase 2 [Mus musculus], full insert sequence
          Length = 878

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 106 agcttcctcggcaccgccc 124
           |||||||||||||||||||
Sbjct: 63  agcttcctcggcaccgccc 81

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 77      tggccgcgtcggcgctgca 95
               |||||||||||||||||||
Sbjct: 1401915 tggccgcgtcggcgctgca 1401933

>dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118I15, full
           insert sequence
          Length = 1518

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 141 cgtccgcagcgtcggcgac 159
           |||||||||||||||||||
Sbjct: 208 cgtccgcagcgtcggcgac 190


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 949,500
Number of Sequences: 3902068
Number of extensions: 949500
Number of successful extensions: 73843
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72258
Number of HSP's gapped (non-prelim): 1585
length of query: 181
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 159
effective length of database: 17,147,199,772
effective search space: 2726404763748
effective search space used: 2726404763748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)