ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-pro... 30 1.2
2ANTR1_MOUSE (Q9CZ52) Anthrax toxin receptor 1 precursor (Tumor e... 30 1.2
3COBL1_ARATH (Q9SRT7) COBRA-like protein 1 precursor 30 1.2
4EXPA_DROME (Q07436) Protein expanded 30 1.5
5IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS) 30 2.0
6PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor t... 29 2.6
7GLU2B_MOUSE (O08795) Glucosidase 2 beta subunit precursor (Gluco... 29 3.4
8AVR2B_MOUSE (P27040) Activin receptor type 2B precursor (EC 2.7.... 28 4.5
9ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 prot... 28 4.5
10ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline... 28 5.9
11KCNN3_MOUSE (P58391) Small conductance calcium-activated potassi... 28 5.9
12SF04_RAT (Q68FU8) Splicing factor 4 28 5.9
13PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor t... 28 5.9
14PB1_HUMAN (Q86U86) Protein polybromo-1 (hPB1) (Polybromo-1D) (BR... 28 5.9
15VGLI_HHV11 (P06487) Glycoprotein I 28 5.9
16KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription fact... 28 5.9
17SYR_DEIRA (Q9RRC4) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 28 7.7
18YM93_YEAST (P40308) Hypothetical 73.6 kDa protein in GLC8-PRE5 i... 28 7.7
19ECM21_YEAST (P38167) Extracellular matrix protein 21 28 7.7
20RD23B_MOUSE (P54728) UV excision repair protein RAD23 homolog B ... 28 7.7
21NPT2A_RAT (Q06496) Sodium-dependent phosphate transport protein ... 28 7.7
22DPOL_ADE40 (P48311) DNA polymerase (EC 2.7.7.7) 27 10.0
23HEP_DROME (Q23977) Dual specificity mitogen-activated protein ki... 27 10.0
24GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region ge... 27 10.0
25KCNN3_RAT (P70605) Small conductance calcium-activated potassium... 27 10.0

>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3 (EC|
            2.7.11.1)
          Length = 1309

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 53   SALVPSRTPSPRLPASTTASRPSS 124
            S   P R+P+P +PA TTAS PS+
Sbjct: 1117 SPTTPCRSPAPDVPADTTASPPSA 1140



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>ANTR1_MOUSE (Q9CZ52) Anthrax toxin receptor 1 precursor (Tumor endothelial|
           marker 8)
          Length = 562

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 7   HPSSQPPAIYGCRRRLRPGPLQDPKPPSPGVHHCLPP 117
           HPSS PPA           P+  P PP+P   HC PP
Sbjct: 500 HPSSPPPA-----------PIYTPPPPAP---HCPPP 522



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>COBL1_ARATH (Q9SRT7) COBRA-like protein 1 precursor|
          Length = 452

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = +1

Query: 16  SQPPAIYGCRRRLRPGPLQDPKP-------PSPGVHHCLPPLLRQT 132
           S P    GCR   +PG   DPK        P+PG +  +PPL++ T
Sbjct: 244 SCPTCSCGCRNTSQPGNCVDPKGPRIASVIPNPGKNAYIPPLVQCT 289



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>EXPA_DROME (Q07436) Protein expanded|
          Length = 1427

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 4    PHPSSQPPAIYGCRRRLRPGPLQDPKPPSPGVHHCLPPLLR 126
            P PS +PP I       R  P+   KPP+   HH   PL +
Sbjct: 1217 PAPSEKPPPIPSKPIPSRMSPIPPRKPPTLNPHHANSPLTK 1257



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>IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)|
          Length = 1321

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 1    SPHPSSQPPAIYGCRRRLRPGPLQDPKPPSPGVHHCLPP 117
            SP+P   P      R    P  LQ P PP+PG  + LPP
Sbjct: 1004 SPYPPLPP------RPSTSPSSLQQPLPPAPGDLYRLPP 1036



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>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC|
            3.1.3.48) (His-domain-containing protein tyrosine
            phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14)
            (PTP-TD14)
          Length = 1636

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 13/45 (28%)
 Frame = +1

Query: 1    SPHPSSQPPAIYG-----CRRRLRPGPLQDPKP--------PSPG 96
            SP+P +  P + G        +L PGP QDP P        PSPG
Sbjct: 996  SPYPYAPQPGVLGQPPPPLHTQLYPGPAQDPLPAHSGALPFPSPG 1040



 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 4    PHPSSQPPAIYGCRRRLRPGPLQDP---KPPSPGVHHCLPP 117
            PHP   P   +G +   +P PLQ P    P +PG+   LPP
Sbjct: 957  PHPQPHPSQAFGPQPPQQPLPLQHPHLFPPQAPGL---LPP 994



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>GLU2B_MOUSE (O08795) Glucosidase 2 beta subunit precursor (Glucosidase II beta|
           subunit) (Protein kinase C substrate, 60.1 kDa protein,
           heavy chain) (PKCSH) (80K-H protein)
          Length = 521

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 58  PGPLQDPKPPSPGVHHCLPPLLRQT 132
           P PLQ P+PPSP     +PP   +T
Sbjct: 332 PPPLQPPQPPSPTEDEKMPPYDEET 356



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>AVR2B_MOUSE (P27040) Activin receptor type 2B precursor (EC 2.7.11.30) (Activin|
           receptor type IIB) (ACTR-IIB)
          Length = 536

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +1

Query: 37  GCRRRLRPGPLQDPKPPSPGVHHCLPPL 120
           GC    +P P QDP PP P     L PL
Sbjct: 187 GCADSFKPLPFQDPGPPPPSPLVGLKPL 214



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>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 5   PIPAPNRRRYMDAAAASALVPSRTPSPRLPASTTASRPS 121
           P+ A  +   + A A S  VP+ +P+P  PAS  A  PS
Sbjct: 674 PVLASPQAGIIPAEAVSMPVPAASPTPASPASNRALTPS 712



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>ENAH_MOUSE (Q03173) Protein enabled homolog (NPC-derived proline-rich protein|
           1) (NDPP-1)
          Length = 802

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +1

Query: 10  PSSQPPAIYGCRRRLRPGPLQDPKPPSPGVHHCLPP 117
           PSSQPPA   C     P     P PPSP +    PP
Sbjct: 360 PSSQPPAAKSC---AWPTSNFSPLPPSPPIMISSPP 392



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>KCNN3_MOUSE (P58391) Small conductance calcium-activated potassium channel|
           protein 3 (SK3)
          Length = 731

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 4   PHPSSQPPAIYGCRRRLRPGPLQDPKPPSP 93
           P P   PPA+     +  PGPL  P+PP P
Sbjct: 36  PPPPPAPPAV----PQQPPGPLLQPQPPQP 61



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>SF04_RAT (Q68FU8) Splicing factor 4|
          Length = 644

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 2   APIPAPNRRRYMDAAAASALVPSRT--PSPRLPASTTASRPS 121
           AP+P P+ RR     A S  VP  T  P+P  PA      PS
Sbjct: 326 APVPNPSLRRKSAPEALSGAVPPITACPTPVAPAPAVNPTPS 367



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>PTN23_MOUSE (Q6PB44) Tyrosine-protein phosphatase non-receptor type 23 (EC|
            3.1.3.48)
          Length = 1692

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 10/50 (20%)
 Frame = +1

Query: 1    SPHPS--SQPPAIYGCRRRLRPGPLQDPKP--------PSPGVHHCLPPL 120
            +P P    QPP       +L PGP QDP P        PSPG  H  P L
Sbjct: 1058 TPQPGVLGQPPPTL--HTQLYPGPSQDPLPPHSGALPFPSPGPPHPHPTL 1105



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>PB1_HUMAN (Q86U86) Protein polybromo-1 (hPB1) (Polybromo-1D) (BRG1-associated|
            factor 180) (BAF180)
          Length = 1689

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 1    SPHPSSQPPAIYGCRRRLRPGPLQDPKPPSPGVHHCLPPLLRQ 129
            +P P   P   YG +  +   P Q   PP PG H   PP+++Q
Sbjct: 1549 TPAPGGSP---YGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQ 1588



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>VGLI_HHV11 (P06487) Glycoprotein I|
          Length = 390

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +1

Query: 4   PHPSSQPPAIYGCRRRLRPGPLQDPKPPSPGVHH 105
           P PS+  PA    +    P P  DPKP  PGV+H
Sbjct: 222 PAPSTTIPAP---QASTTPFPTGDPKPQPPGVNH 252



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>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Erythroid transcription
           factor FKLF-2)
          Length = 289

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 19/41 (46%), Positives = 20/41 (48%)
 Frame = +2

Query: 2   APIPAPNRRRYMDAAAASALVPSRTPSPRLPASTTASRPSS 124
           AP PAP  RR   AAA  A  P R P P  PA      P+S
Sbjct: 74  APAPAPAERR-EGAAARKARTPCRLP-PAPPAPPPGPEPAS 112



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>SYR_DEIRA (Q9RRC4) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 609

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 135 KGLTEEGREAVVDAGRRGLGVLEGTRAEAAA---ASIYRRRLGAG 10
           KG+     +A+ +A +R L VL+G   + AA   A+   RR+G G
Sbjct: 406 KGIAVSADDAMDEAQKRALSVLQGINPDLAAREDAAEIARRIGLG 450



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>YM93_YEAST (P40308) Hypothetical 73.6 kDa protein in GLC8-PRE5 intergenic|
           region
          Length = 642

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 13  SSQPPAIYGCRRRLRPGPLQDPKPPSPGVH 102
           SSQ P   G    L P PL  P PPS  V+
Sbjct: 477 SSQSPIKAGTVEDLEPEPLMSPVPPSSAVN 506



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>ECM21_YEAST (P38167) Extracellular matrix protein 21|
          Length = 1117

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 11  PAPNRRRYMDAAAASALVPSRTPSPRLPASTTASRPS 121
           P PN RR+   A   ++  S T +PR   S T  R S
Sbjct: 100 PPPNARRHSTTAIQGSISDSATTTPRSSTSDTNRRTS 136



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>RD23B_MOUSE (P54728) UV excision repair protein RAD23 homolog B (mHR23B) (XP-C|
           repair-complementing complex 58 kDa protein) (p58)
          Length = 416

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 44  AAASALVPSRTPSPRLPASTTAS 112
           A   AL P+ TP+   PASTTAS
Sbjct: 112 APTPALAPTSTPASTTPASTTAS 134



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>NPT2A_RAT (Q06496) Sodium-dependent phosphate transport protein 2A|
           (Sodium/phosphate cotransporter 2A) (Na(+)/Pi
           cotransporter 2A) (Sodium-phosphate transport protein
           2A) (Na(+)-dependent phosphate cotransporter 2A)
           (NaPi-2a) (Solute carrier family 34 me
          Length = 637

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 11  PAPNRRRYMDAAAASALVPSRTPSPRLPASTT 106
           P P R R+M   AA A VPS     R+P +TT
Sbjct: 15  PLPVRGRHMVHGAAFAYVPSPQVLHRIPGTTT 46



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>DPOL_ADE40 (P48311) DNA polymerase (EC 2.7.7.7)|
          Length = 1188

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
 Frame = +2

Query: 11  PAPNRRRYMDAAAASALVPSRTP-------SPRLPASTTAS 112
           P P RRR   + A +A   +R P       SP  P STTAS
Sbjct: 21  PQPPRRRVRQSTAGAAPTATRAPRRRAATASPGEPPSTTAS 61



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>HEP_DROME (Q23977) Dual specificity mitogen-activated protein kinase kinase|
           hemipterous (EC 2.7.12.2) (MAPKK)
          Length = 1178

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 5   PIPAPNRRRYMDAAAASALVPSRTPSPRLPASTTASRPSS 124
           P+P  N+    DAA A+A   + T  P + A+   + P++
Sbjct: 677 PLPHNNQTLITDAATAAAAAATATTPPNIAATVLTTTPTT 716



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>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +1

Query: 1   SPHPSSQPPAIYGCRRRLRPGPLQDPKPPSPGVHHCLPPLLRQTL 135
           SPHP+ +PP+    R   RP  +  P P  P +H C PP    TL
Sbjct: 742 SPHPT-RPPS----RPPSRPQSVSRP-PSEPPLHPCPPPQAPPTL 780



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>KCNN3_RAT (P70605) Small conductance calcium-activated potassium channel|
           protein 3 (SK3)
          Length = 732

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   PHPSSQPPAIYGCRRRLRPGPLQDPKPP 87
           P P S PPA+     +  PGPL  P+PP
Sbjct: 36  PPPPSAPPAV----PQQPPGPLLQPQPP 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,234,591
Number of Sequences: 219361
Number of extensions: 512327
Number of successful extensions: 3453
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3402
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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