ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474454.1| Oryza sativa (japonica cultivar-group), predic... 60 3e-06
2emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 60 3e-06
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 60 3e-06
4dbj|AK073360.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 3e-06
5tpe|BN000593.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 60 3e-06
6emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 60 3e-06
7ref|XM_474449.1| Oryza sativa (japonica cultivar-group), predic... 52 8e-04
8dbj|AK067667.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 8e-04
9tpe|BN000591.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 52 8e-04
10dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.19
11emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.19
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 0.74
13gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 0.74
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.74
15ref|XM_474445.1| Oryza sativa (japonica cultivar-group), predic... 40 2.9
16dbj|AK103558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9
17tpe|BN000589.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 2.9 
>ref|XM_474454.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1017

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 175 cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
           ||||||| ||||| |||||||||||||||||  |||||||  ||||||||||||
Sbjct: 102 cttccacgcggcgtcgtgcccgcagctggagtccatcgtgcgctcctccgtgca 155
to top
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                   
Query: 175   cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
             ||||||| ||||| |||||||||||||||||  |||||||  ||||||||||||
Sbjct: 71540 cttccacgcggcgtcgtgcccgcagctggagtccatcgtgcgctcctccgtgca 71593



 Score = 44.1 bits (22), Expect = 0.19
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 175   cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
             ||||||| ||||| ||||||||  |||||||  |||||||  ||||||||||||
Sbjct: 74831 cttccacgcggcgtcgtgcccgtcgctggaggccatcgtgagctcctccgtgca 74884



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 189   cgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
             |||||||||||||||||| || ||||  |||| |||||||
Sbjct: 84831 cgtgcccgcagctggagaccaccgtgcgctccgccgtgca 84870
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                      
Query: 175      cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
                ||||||| ||||| |||||||||||||||||  |||||||  ||||||||||||
Sbjct: 35281694 cttccacgcggcgtcgtgcccgcagctggagtccatcgtgcgctcctccgtgca 35281641



 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 175      cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
                ||||||| | ||| |||||||||||||||||| |||||||  |||| |||||||
Sbjct: 35251633 cttccacgctgcgtcgtgcccgcagctggagaccatcgtgcgctccgccgtgca 35251580



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 189      cgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
                |||||||||||||||||| || ||||  |||| |||||||
Sbjct: 35228641 cgtgcccgcagctggagaccaccgtgcgctccgccgtgca 35228602
to top
>dbj|AK073360.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030A01, full
           insert sequence
          Length = 1240

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 175 cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
           ||||||| ||||| |||||||||||||||||  |||||||  ||||||||||||
Sbjct: 168 cttccacgcggcgtcgtgcccgcagctggagtccatcgtgcgctcctccgtgca 221
to top
>tpe|BN000593.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx64 gene for
           class III peroxidase 64 precursor, exons 1-2
          Length = 1091

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                 
Query: 175 cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
           ||||||| ||||| |||||||||||||||||  |||||||  ||||||||||||
Sbjct: 102 cttccacgcggcgtcgtgcccgcagctggagtccatcgtgcgctcctccgtgca 155
to top
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 175   cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
             ||||||| ||||| |||||||||||||||||  |||||||  ||||||||||||
Sbjct: 77539 cttccacgcggcgtcgtgcccgcagctggagtccatcgtgcgctcctccgtgca 77486



 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 175   cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
             ||||||| | ||| |||||||||||||||||| |||||||  |||| |||||||
Sbjct: 47478 cttccacgctgcgtcgtgcccgcagctggagaccatcgtgcgctccgccgtgca 47425



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 189   cgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
             |||||||||||||||||| || ||||  |||| |||||||
Sbjct: 24486 cgtgcccgcagctggagaccaccgtgcgctccgccgtgca 24447
to top
>ref|XM_474449.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1059

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 175 cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
           ||||||| | ||| |||||||||||||||||| |||||||  |||| |||||||
Sbjct: 117 cttccacgctgcgtcgtgcccgcagctggagaccatcgtgcgctccgccgtgca 170
to top
>dbj|AK067667.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118D03, full
           insert sequence
          Length = 1385

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 175 cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
           ||||||| | ||| |||||||||||||||||| |||||||  |||| |||||||
Sbjct: 248 cttccacgctgcgtcgtgcccgcagctggagaccatcgtgcgctccgccgtgca 301
to top
>tpe|BN000591.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx62 gene for
           class III peroxidase 62 precursor, exons 1-2
          Length = 1186

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 175 cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
           ||||||| | ||| |||||||||||||||||| |||||||  |||| |||||||
Sbjct: 117 cttccacgctgcgtcgtgcccgcagctggagaccatcgtgcgctccgccgtgca 170
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 166     cggcgccggcttccactcggcg 187
               ||||||||||||||||||||||
Sbjct: 3372313 cggcgccggcttccactcggcg 3372292
to top
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete
             sequence
          Length = 82895

 Score = 44.1 bits (22), Expect = 0.19
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 175   cttccactcggcgacgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
             ||||||| ||||| ||||||||  |||||||  |||||||  ||||||||||||
Sbjct: 82216 cttccacgcggcgtcgtgcccgtcgctggaggccatcgtgagctcctccgtgca 82163



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 189   cgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
             |||||||||||||||||| || ||||  |||| |||||||
Sbjct: 72216 cgtgcccgcagctggagaccaccgtgcgctccgccgtgca 72177
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 132     tgctagtctcccctgccctgt 152
               |||||||||||||||||||||
Sbjct: 7660956 tgctagtctcccctgccctgt 7660976
to top
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   tgctagtctcccctgccctgt 152
             |||||||||||||||||||||
Sbjct: 54334 tgctagtctcccctgccctgt 54314
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.74
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 132     tgctagtctcccctgccctgt 152
               |||||||||||||||||||||
Sbjct: 7658791 tgctagtctcccctgccctgt 7658811
to top
>ref|XM_474445.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1047

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 189 cgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
           |||||||||||||||||| || ||||  |||| |||||||
Sbjct: 161 cgtgcccgcagctggagaccaccgtgcgctccgccgtgca 200
to top
>dbj|AK103558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132H20, full
           insert sequence
          Length = 1413

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 189 cgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
           |||||||||||||||||| || ||||  |||| |||||||
Sbjct: 264 cgtgcccgcagctggagaccaccgtgcgctccgccgtgca 303
to top
>tpe|BN000589.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx60 gene for
           class III peroxidase 60 precursor, exons 1-3
          Length = 1221

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 189 cgtgcccgcagctggagagcatcgtgttctcctccgtgca 228
           |||||||||||||||||| || ||||  |||| |||||||
Sbjct: 161 cgtgcccgcagctggagaccaccgtgcgctccgccgtgca 200


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,207,899
Number of Sequences: 3902068
Number of extensions: 1207899
Number of successful extensions: 23595
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23501
Number of HSP's gapped (non-prelim): 94
length of query: 228
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 206
effective length of database: 17,147,199,772
effective search space: 3532323153032
effective search space used: 3532323153032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top