ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_476311.1| Oryza sativa (japonica cultivar-group), predic... 46 0.036
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.036
3dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.036
4dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.036
5ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa804... 44 0.14
6ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predic... 44 0.14
7dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.14
8gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 38 8.8
9ref|XM_415092.1| PREDICTED: Gallus gallus similar to matrix meta... 38 8.8
10emb|X79381.1|THECH42 T.harzianum (IMI 206040) ech-42 gene 38 8.8
11dbj|AP006436.1| Sus scrofa CC chemokine receptor genes(CCR3, CCR... 38 8.8
12emb|Z80358.1|THECH42P T.harzianum DNA for ech42 gene promotor 38 8.8
13emb|AL808131.9| Mouse DNA sequence from clone RP23-367H7 on chro... 38 8.8
14dbj|AB041753.1| Trichoderma harzianum chit-HAR3 gene for endochi... 38 8.8

>ref|XM_476311.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1065

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 82  cgccggcgtgaaggagccaccgagccagtac 112
           |||||||||| ||||||||||||||| ||||
Sbjct: 48  cgccggcgtgcaggagccaccgagccggtac 78



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 82      cgccggcgtgaaggagccaccgagccagtac 112
               |||||||||| ||||||||||||||| ||||
Sbjct: 3911444 cgccggcgtgcaggagccaccgagccggtac 3911474



 Score = 44.1 bits (22), Expect = 0.14
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 65      gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 118
               ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 3904520 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3904573



 Score = 44.1 bits (22), Expect = 0.14
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 65      gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 118
               ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 3892697 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3892750



 Score = 44.1 bits (22), Expect = 0.14
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                     
Query: 65      gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 118
               ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 3854641 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 3854694



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>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 82    cgccggcgtgaaggagccaccgagccagtac 112
             |||||||||| ||||||||||||||| ||||
Sbjct: 17320 cgccggcgtgcaggagccaccgagccggtac 17350



 Score = 44.1 bits (22), Expect = 0.14
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 65    gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 118
             ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 10396 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 10449



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>dbj|AK102979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115N23, full
           insert sequence
          Length = 1303

 Score = 46.1 bits (23), Expect = 0.036
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 82  cgccggcgtgaaggagccaccgagccagtac 112
           |||||||||| ||||||||||||||| ||||
Sbjct: 143 cgccggcgtgcaggagccaccgagccggtac 173



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>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA
          Length = 1164

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 65  gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 118
           ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 34  gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 87



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>ref|XM_476309.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1053

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 65  gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 118
           ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 34  gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 87



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>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0015E04
          Length = 152046

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                    
Query: 65     gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 118
              ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 150651 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 150704



 Score = 44.1 bits (22), Expect = 0.14
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                    
Query: 65     gtgcaagagcttgtgggcgccggcgtgaaggagccaccgagccagtacgtgctt 118
              ||||||||||| | ||  ||||||||  ||||||||||||| | ||||||||||
Sbjct: 112595 gtgcaagagctggcggcggccggcgtcgaggagccaccgagtcggtacgtgctt 112648



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 135     ccgctgcggcggcggtctc 153
               |||||||||||||||||||
Sbjct: 3645831 ccgctgcggcggcggtctc 3645813



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>ref|XM_415092.1| PREDICTED: Gallus gallus similar to matrix metalloproteinase 17;
            membrane-type-4 matrix metalloproteinase; membrane-type
            matrix metalloproteinase 4 (LOC416801), mRNA
          Length = 1380

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 128  taccgtcccgctgcggcgg 146
            |||||||||||||||||||
Sbjct: 1191 taccgtcccgctgcggcgg 1209



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>emb|X79381.1|THECH42 T.harzianum (IMI 206040) ech-42 gene
          Length = 2304

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 62 atcgtgcaagagcttgtgg 80
          |||||||||||||||||||
Sbjct: 55 atcgtgcaagagcttgtgg 37



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>dbj|AP006436.1| Sus scrofa CC chemokine receptor genes(CCR3, CCR1, CCXCR1, FYCO1),
             complete and partial cds, clone: 0659A02
          Length = 167298

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     agcaagcaaccatggcttc 24
             |||||||||||||||||||
Sbjct: 37312 agcaagcaaccatggcttc 37330



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>emb|Z80358.1|THECH42P T.harzianum DNA for ech42 gene promotor
          Length = 829

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 62  atcgtgcaagagcttgtgg 80
           |||||||||||||||||||
Sbjct: 532 atcgtgcaagagcttgtgg 514



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>emb|AL808131.9| Mouse DNA sequence from clone RP23-367H7 on chromosome X, complete
              sequence
          Length = 210322

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 7      gcaagcaaccatggcttct 25
              |||||||||||||||||||
Sbjct: 111651 gcaagcaaccatggcttct 111669



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>dbj|AB041753.1| Trichoderma harzianum chit-HAR3 gene for endochitinase-HAR3,
           complete cds
          Length = 2137

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 62  atcgtgcaagagcttgtgg 80
           |||||||||||||||||||
Sbjct: 199 atcgtgcaagagcttgtgg 181


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,030,509
Number of Sequences: 3902068
Number of extensions: 1030509
Number of successful extensions: 76327
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76178
Number of HSP's gapped (non-prelim): 149
length of query: 180
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 158
effective length of database: 17,147,199,772
effective search space: 2709257563976
effective search space used: 2709257563976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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