ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ABP20_PRUPE (O04011) Auxin-binding protein ABP20 precursor 43 3e-04
2AB19A_PRUPE (Q9ZRA4) Auxin-binding protein ABP19a precursor 42 6e-04
3AB19B_PRUPE (O04012) Auxin-binding protein ABP19b precursor 40 0.001
4GLT3_ARATH (Q9S772) Putative germin-like protein subfamily T mem... 35 0.056
5GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1 pre... 35 0.056
6GLP1_BRANA (P46271) Germin-like protein 1 precursor 34 0.095
7GL23_ARATH (P93000) Germin-like protein subfamily 2 member 3 pre... 34 0.12
8GLP1_SINAL (P45854) Germin-like protein 1 precursor 31 1.1
9GL25_ARATH (O65252) Probable germin-like protein subfamily 2 mem... 30 2.3
10GL33_ARATH (P94072) Germin-like protein subfamily 3 member 3 pre... 29 3.1
11GLT2_ARATH (Q9LMC9) Germin-like protein subfamily T member 2 pre... 29 4.0
12GLT1_ARATH (P92995) Germin-like protein subfamily T member 1 pre... 28 5.2
13HPCG_ECOLI (P42270) 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (... 28 6.8
14GL21_ARATH (P94014) Germin-like protein subfamily 2 member 1 pre... 28 6.8

>ABP20_PRUPE (O04011) Auxin-binding protein ABP20 precursor|
          Length = 214

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +1

Query: 46  LLPVLISFLVLPFSAMALTQDFCVADLSCSDTPAXYPCK 162
           + P+L +F +L  S+ A  QDFCVADL+  + PA + CK
Sbjct: 7   IFPILFTFFLLLSSSNAAVQDFCVADLAAPEGPAGFSCK 45



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>AB19A_PRUPE (Q9ZRA4) Auxin-binding protein ABP19a precursor|
          Length = 209

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +1

Query: 46  LLPVLISFLVLPFSAMALTQDFCVADLSCSDTPAXYPCK 162
           + P+  +F +L  S+ A  QDFCVAD    D PA Y CK
Sbjct: 2   IFPIFFTFFLLLSSSHASVQDFCVADYKAPDGPAGYSCK 40



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>AB19B_PRUPE (O04012) Auxin-binding protein ABP19b precursor|
          Length = 209

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 46  LLPVLISFLVLPFSAMALTQDFCVADLSCSDTPAXYPCK 162
           + P+  +F +L  ++ A  QDFCVAD    D PA Y CK
Sbjct: 2   IFPIFFTFFLLLSTSHASVQDFCVADYKAPDGPAGYSCK 40



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>GLT3_ARATH (Q9S772) Putative germin-like protein subfamily T member 3|
           precursor
          Length = 227

 Score = 35.0 bits (79), Expect = 0.056
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +1

Query: 70  LVLPFSAMALTQDFCVADLSCSDTPAXYPCKT 165
           L LP   +   QDFCVADL  + T + YPCK+
Sbjct: 30  LSLPALKLNPFQDFCVADLQATPTNSGYPCKS 61



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>GL31_ARATH (P94040) Germin-like protein subfamily 3 member 1 precursor|
           (AtGER1) (At-GERM1) (AtGLP1)
          Length = 208

 Score = 35.0 bits (79), Expect = 0.056
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 94  ALTQDFCVADLSCSDTPAXYPC 159
           A  QDFCVA+L  ++TPA YPC
Sbjct: 17  ASVQDFCVANLKRAETPAGYPC 38



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>GLP1_BRANA (P46271) Germin-like protein 1 precursor|
          Length = 207

 Score = 34.3 bits (77), Expect = 0.095
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 103 QDFCVADLSCSDTPAXYPC 159
           QDFCVA+L  ++TPA YPC
Sbjct: 20  QDFCVANLKRAETPAGYPC 38



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>GL23_ARATH (P93000) Germin-like protein subfamily 2 member 3 precursor|
          Length = 219

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = +1

Query: 46  LLPVLISF-LVLPFSAMALT---QDFCVADLSCSDTPAXYPCK 162
           ++P+ ++F LV    A+A T   QDFCVADLS       YPCK
Sbjct: 5   MIPIFVTFMLVAAHMALADTNMLQDFCVADLSNGLKVNGYPCK 47



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>GLP1_SINAL (P45854) Germin-like protein 1 precursor|
          Length = 211

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 55  VLISFLVLPFSAM--ALTQDFCVADLSCSDTPAXYPCK 162
           + I F++  FS++  A  QDFCVAD      P+ Y CK
Sbjct: 5   IQIFFILSLFSSISFASVQDFCVADPKGPQNPSGYSCK 42



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>GL25_ARATH (O65252) Probable germin-like protein subfamily 2 member 5|
           precursor
          Length = 213

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 49  LPVLISFLVLPFSAMALTQDFCVADLSCSDTPAXYPCK 162
           L V+++ L +  ++  + QD CVADLS +     Y CK
Sbjct: 8   LVVVVTMLFVAMASAEMLQDVCVADLSNAVKVNGYTCK 45



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>GL33_ARATH (P94072) Germin-like protein subfamily 3 member 3 precursor|
           (AtGER3) (AtGLP2)
          Length = 211

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 88  AMALTQDFCVADLSCSDTPAXYPCK 162
           + A  QDFCVAD     +P+ Y CK
Sbjct: 18  SFASVQDFCVADPKGPQSPSGYSCK 42



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>GLT2_ARATH (Q9LMC9) Germin-like protein subfamily T member 2 precursor|
          Length = 220

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 103 QDFCVADLSCSDTPAXYPCKT 165
           QDFCV DL  S +   +PCK+
Sbjct: 34  QDFCVGDLKASPSINGFPCKS 54



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>GLT1_ARATH (P92995) Germin-like protein subfamily T member 1 precursor|
          Length = 220

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 103 QDFCVADLSCSDTPAXYPCKT 165
           QDFCV DL  S +   +PCK+
Sbjct: 34  QDFCVGDLKASASINGFPCKS 54



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>HPCG_ECOLI (P42270) 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-)|
           (OHED hydratase)
          Length = 264

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 140 VSLQDRSATQKSWVRAMAEKGRTRKEMRTG 51
           ++++D  A Q+ WVR    +GRT K  + G
Sbjct: 34  ITIEDAYAVQREWVRLKIAEGRTLKGHKIG 63



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>GL21_ARATH (P94014) Germin-like protein subfamily 2 member 1 precursor|
          Length = 207

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 46  LLPVLISFLVLPFSAMALTQDFCVADLSCSDTPAXYPCK 162
           LL   +SF +   +   + QD CVADL        +PCK
Sbjct: 10  LLLTTVSFFISSSADPDMLQDLCVADLPSGIKINGFPCK 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,018,958
Number of Sequences: 219361
Number of extensions: 152075
Number of successful extensions: 503
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 80,573,946
effective HSP length: 31
effective length of database: 73,773,755
effective search space used: 1770570120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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