ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SARM1_MOUSE (Q6PDS3) Sterile alpha and TIR motif-containing prot... 35 0.045
2SARM1_HUMAN (Q6SZW1) Sterile alpha and TIR motif-containing prot... 29 3.2
3ENC_DROME (Q8MSX1) Protein encore 28 9.5

>SARM1_MOUSE (Q6PDS3) Sterile alpha and TIR motif-containing protein 1 (Tir-1|
           homolog)
          Length = 724

 Score = 35.4 bits (80), Expect = 0.045
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 96  RRPAPSLLHQCARSLAGCACSGGRRARACVV 4
           RR  P+LL  CA +LA CA  GG+  + C+V
Sbjct: 216 RRTDPALLRHCALALANCALHGGQTVQRCMV 246



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>SARM1_HUMAN (Q6SZW1) Sterile alpha and TIR motif-containing protein 1 (Sterile|
           alpha and Armadillo repeat protein) (Tir-1 homolog)
          Length = 724

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 96  RRPAPSLLHQCARSLAGCACSGGRRARACVV 4
           RR  P+LL  CA +L  CA  GG+  +  +V
Sbjct: 216 RRTDPALLRHCALALGNCALHGGQAVQRRMV 246



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>ENC_DROME (Q8MSX1) Protein encore|
          Length = 1818

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 104 GGGGDQRHRCCTSARARWPAVPVAGGGA 21
           GGGG ++HR  T+A+   P +   GG +
Sbjct: 350 GGGGGKKHRANTNAKGNKPRLKNLGGSS 377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,077,629
Number of Sequences: 219361
Number of extensions: 194048
Number of successful extensions: 916
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 80,573,946
effective HSP length: 10
effective length of database: 78,380,336
effective search space used: 1881128064
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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