>SNUT1_HUMAN (O43290) U4/U6.U5 tri-snRNP-associated protein 1 (U4/U6.U5|
           tri-snRNP-associated 110 kDa protein) (Squamous cell
           carcinoma antigen recognized by T cells 1) (SART-1)
           (hSART-1) (hSnu66)
          Length = 800

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 2   PPNFRRTRKVSSRLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQLEA 151
           PP  R  +K   R    S   GG   ++ K +RER  E+  G +G++ EA
Sbjct: 29  PPRHREHKKHKHR----SGGSGGSGGERRKRSRERGGERGSGRRGAEAEA 74

>UVRA_VIBCH (Q9KUW5) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 38  RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 133
           RL + +T + GG AQ+ K+ARE  L K   GK
Sbjct: 821 RLGQSATTLSGGEAQRVKLARE--LSKRDTGK 850

>UVRA_VIBVY (Q7MHB5) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 38  RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 133
           RL + +T + GG AQ+ K+ARE  L K   GK
Sbjct: 821 RLGQAATTLSGGEAQRVKLARE--LSKRDTGK 850

>UVRA_VIBVU (Q8DCJ3) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 38  RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 133
           RL + +T + GG AQ+ K+ARE  L K   GK
Sbjct: 821 RLGQAATTLSGGEAQRVKLARE--LSKRDTGK 850

>UVRA_VIBPA (Q87LA0) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 38  RLAEESTAMGGGNAQKSKMARERNLEKLKGGK 133
           RL + +T + GG AQ+ K+ARE  L K   GK
Sbjct: 821 RLGQAATTLSGGEAQRVKLARE--LSKRDTGK 850

>UVRA_SHIFL (P0A699) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 38  RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 145
           RL + +T + GG AQ+ K+ARE +    K G G  L
Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853

>UVRA_ECOLI (P0A698) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 38  RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 145
           RL + +T + GG AQ+ K+ARE +    K G G  L
Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853

>UVRA_ECOL6 (Q8FB02) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 38  RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 145
           RL + +T + GG AQ+ K+ARE +    K G G  L
Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853

>UVRA_ECO57 (Q8X5U9) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 940

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 38  RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 145
           RL + +T + GG AQ+ K+ARE +    K G G  L
Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853

>UVRA_SALTY (P0A195) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 941

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 38  RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 145
           RL + +T + GG AQ+ K+ARE +    K G G  L
Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853

>UVRA_SALTI (P0A196) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 941

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 38  RLAEESTAMGGGNAQKSKMARERNLEKLKGGKGSQL 145
           RL + +T + GG AQ+ K+ARE +    K G G  L
Sbjct: 822 RLGQSATTLSGGEAQRVKLARELS----KRGTGQTL 853

>VE2_HPV22 (P50768) Regulatory protein E2|
          Length = 436

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 20  TRKVSSRLAEESTAMGGGNAQKSKMARERNLEKLKGGKG 136
           TR+  +R    ST   GG A +  ++RE      +GG+G
Sbjct: 260 TRRRKTRSRSRSTEQRGGRATRRSLSRESAESPRRGGRG 298


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.130    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,291,877
Number of Sequences: 219361
Number of extensions: 252087
Number of successful extensions: 639
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 80,573,946
effective HSP length: 42
effective length of database: 71,360,784
effective search space used: 1712658816
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)