ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194132.2| Oryza sativa (japonica cultivar-group), mRNA 186 2e-44
2dbj|AK062043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 2e-44
3gb|AY107008.1| Zea mays PCO148957 mRNA sequence 168 4e-39
4gb|BT016277.1| Zea mays clone Contig110 mRNA sequence 105 5e-20
5gb|AY107168.1| Zea mays PCO087750 mRNA sequence 105 5e-20
6ref|XM_468864.1| Oryza sativa (japonica cultivar-group), mRNA 100 3e-18
7ref|XM_468863.1| Oryza sativa (japonica cultivar-group), mRNA 100 3e-18
8dbj|AK066154.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 3e-18
9dbj|AK058503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 3e-18
10gb|BT013724.1| Lycopersicon esculentum clone 132575F, mRNA sequence 86 5e-14
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 76 5e-11
12dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic D... 76 5e-11
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 1e-08
14gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genom... 68 1e-08
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 1e-08
16gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genom... 68 1e-08
17gb|AC144765.19| Medicago truncatula clone mth2-35o11, complete s... 48 0.010
18gb|AC137703.42| Medicago truncatula clone mth2-11d24, complete s... 48 0.010
19dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 0.64
20emb|AJ012688.1|CAR012688 Cicer arietinum mRNA for hypothetical p... 42 0.64
21ref|XM_511542.1| PREDICTED: Pan troglodytes similar to Histone d... 40 2.5
22ref|XM_365780.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 2.5
23gb|BC051824.1| Homo sapiens histone deacetylase 5, transcript va... 40 2.5
24ref|NM_001015053.1| Homo sapiens histone deacetylase 5 (HDAC5), ... 40 2.5
25gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 2.5
26ref|NM_005474.4| Homo sapiens histone deacetylase 5 (HDAC5), tra... 40 2.5
27gb|BC038423.1| Homo sapiens, Similar to histone deacetylase 5, c... 40 2.5
28emb|CR859595.1| Pongo pygmaeus mRNA; cDNA DKFZp459O115 (from clo... 40 2.5
29dbj|AK075095.1| Homo sapiens cDNA FLJ90614 fis, clone PLACE10020... 40 2.5
30dbj|AK027734.1| Homo sapiens cDNA FLJ14828 fis, clone OVARC10009... 40 2.5
31dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 2.5
32dbj|AB177853.1| Homo sapiens mRNA for KIAA0600 splice variant 1 40 2.5
33dbj|AK110188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.5
34gb|AF132608.1|AF132608 Homo sapiens histone deacetylase 5 mRNA, ... 40 2.5
35gb|AF039691.1|AF039691 Homo sapiens antigen NY-CO-9 (NY-CO-9) mR... 40 2.5
36dbj|AB011172.2| Homo sapiens mRNA for KIAA0600 protein, partial cds 40 2.5
37gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 38 10.0
38gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome... 38 10.0
39ref|XM_368524.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 38 10.0
40gb|AF535176.1| Enterococcus faecium strain CIP 103014 RNA polyme... 38 10.0
41gb|AY167138.1| Enterococcus faecium isolate 343-3 DNA-dependent ... 38 10.0
42ref|XM_799499.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 10.0
43ref|XM_800219.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 10.0
44gb|AF226997.1| Cladosporium fulvum methionine synthase gene, com... 38 10.0
45gb|AY069953.1| Hordeum vulgare APETALA2-like protein (AP2L1) mRN... 38 10.0
46dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 10.0
47gb|AC019051.8| Homo sapiens BAC clone RP11-92L24 from 2, complet... 38 10.0
48gb|AC106720.8| Homo sapiens 3 BAC RP11-26M20 (Roswell Park Cance... 38 10.0
49gb|AF242881.1|AF242881 Agrobacterium tumefaciens octopine-type T... 38 10.0
50dbj|AP005752.5| Oryza sativa (japonica cultivar-group) genomic D... 38 10.0
51gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 10.0
52emb|AL645547.14| Mouse DNA sequence from clone RP23-158M12 on ch... 38 10.0
53gb|M13006.1|BOVGTPA Bovine GTP-binding stimulatory protein of ad... 38 10.0 
>ref|NM_194132.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 559

 Score =  186 bits (94), Expect = 2e-44
 Identities = 127/138 (92%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagctg 121
           |||||||||||||| |  |||||||| ||||||||||||||||||||| | ||||||   
Sbjct: 107 atgggcggcggcaatgggcagaagtcgaagatggcgagggagaggaacatggagaagaac 166

                                                                       
Query: 122 aagggcggcaaggggagccagctcgaggccaacaagaaggccatgaacatccagtgcaag 181
           ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 167 aagggcgccaaggggagccagcttgaggccaacaagaaggccatgaacatccagtgcaag 226

                             
Query: 182 atatgcatgcagactttc 199
           ||||||||||||||||||
Sbjct: 227 atatgcatgcagactttc 244
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>dbj|AK062043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A07, full
           insert sequence
          Length = 559

 Score =  186 bits (94), Expect = 2e-44
 Identities = 127/138 (92%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagctg 121
           |||||||||||||| |  |||||||| ||||||||||||||||||||| | ||||||   
Sbjct: 107 atgggcggcggcaatgggcagaagtcgaagatggcgagggagaggaacatggagaagaac 166

                                                                       
Query: 122 aagggcggcaaggggagccagctcgaggccaacaagaaggccatgaacatccagtgcaag 181
           ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 167 aagggcgccaaggggagccagcttgaggccaacaagaaggccatgaacatccagtgcaag 226

                             
Query: 182 atatgcatgcagactttc 199
           ||||||||||||||||||
Sbjct: 227 atatgcatgcagactttc 244
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>gb|AY107008.1| Zea mays PCO148957 mRNA sequence
          Length = 672

 Score =  168 bits (85), Expect = 4e-39
 Identities = 124/137 (90%)
 Strand = Plus / Plus

                                                                       
Query: 59  gccatgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaag 118
           |||||||||||||||||||  |||||||||||||||||| | |||||||||  |||||||
Sbjct: 105 gccatgggcggcggcaacggccagaagtccaagatggcgcgcgagaggaacgccgagaag 164

                                                                       
Query: 119 ctgaagggcggcaaggggagccagctcgaggccaacaagaaggccatgaacatccagtgc 178
              ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 165 aacaagggcggcaaaggcagccagctggaggccaacaagaaggccatgaacatccagtgc 224

                            
Query: 179 aagatatgcatgcagac 195
           ||||| |||||||||||
Sbjct: 225 aagatctgcatgcagac 241
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>gb|BT016277.1| Zea mays clone Contig110 mRNA sequence
          Length = 644

 Score =  105 bits (53), Expect = 5e-20
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                       
Query: 60  ccatgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagc 119
           |||||||||| |||||||  |||||||||||||||||  | ||| | ||| | |||||| 
Sbjct: 122 ccatgggcggtggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 181

                                                                       
Query: 120 tgaagggcggcaaggggagccagctcgaggccaacaagaaggccatgaacatccagtgca 179
             ||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 182 acaagggggccaaggggagccagctcgagaccaacaagaaggccatgagcatccagtgca 241

            
Query: 180 a 180
           |
Sbjct: 242 a 242
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>gb|AY107168.1| Zea mays PCO087750 mRNA sequence
          Length = 922

 Score =  105 bits (53), Expect = 5e-20
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                       
Query: 60  ccatgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagc 119
           |||||||||| |||||||  |||||||||||||||||  | ||| | ||| | |||||| 
Sbjct: 318 ccatgggcggtggcaacggccagaagtccaagatggcccgcgagcgcaacttggagaaga 377

                                                                       
Query: 120 tgaagggcggcaaggggagccagctcgaggccaacaagaaggccatgaacatccagtgca 179
             ||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 378 acaagggggccaaggggagccagctcgagaccaacaagaaggccatgagcatccagtgca 437

            
Query: 180 a 180
           |
Sbjct: 438 a 438
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>ref|XM_468864.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 404

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagctg 121
           ||||||||||||||||  |||||||||| ||||||  | ||| | ||| | ||||||   
Sbjct: 92  atgggcggcggcaacgggcagaagtccaggatggcccgcgagcgcaacatggagaaggcc 151

                                                                 
Query: 122 aagggcggcaaggggagccagctcgaggccaacaagaaggccatgaacatccag 175
           ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 152 aagggcgccaaggggagccagcttgagaccaacaagaaggccatgaacatccag 205
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>ref|XM_468863.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 551

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagctg 121
           ||||||||||||||||  |||||||||| ||||||  | ||| | ||| | ||||||   
Sbjct: 129 atgggcggcggcaacgggcagaagtccaggatggcccgcgagcgcaacatggagaaggcc 188

                                                                 
Query: 122 aagggcggcaaggggagccagctcgaggccaacaagaaggccatgaacatccag 175
           ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 189 aagggcgccaaggggagccagcttgagaccaacaagaaggccatgaacatccag 242
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>dbj|AK066154.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056J04, full
           insert sequence
          Length = 683

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagctg 121
           ||||||||||||||||  |||||||||| ||||||  | ||| | ||| | ||||||   
Sbjct: 138 atgggcggcggcaacgggcagaagtccaggatggcccgcgagcgcaacatggagaaggcc 197

                                                                 
Query: 122 aagggcggcaaggggagccagctcgaggccaacaagaaggccatgaacatccag 175
           ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 198 aagggcgccaaggggagccagcttgagaccaacaagaaggccatgaacatccag 251
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>dbj|AK058503.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F08, full
           insert sequence
          Length = 757

 Score = 99.6 bits (50), Expect = 3e-18
 Identities = 98/114 (85%)
 Strand = Plus / Plus

                                                                       
Query: 62  atgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagctg 121
           ||||||||||||||||  |||||||||| ||||||  | ||| | ||| | ||||||   
Sbjct: 104 atgggcggcggcaacgggcagaagtccaggatggcccgcgagcgcaacatggagaaggcc 163

                                                                 
Query: 122 aagggcggcaaggggagccagctcgaggccaacaagaaggccatgaacatccag 175
           ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 164 aagggcgccaaggggagccagcttgagaccaacaagaaggccatgaacatccag 217
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>gb|BT013724.1| Lycopersicon esculentum clone 132575F, mRNA sequence
          Length = 577

 Score = 85.7 bits (43), Expect = 5e-14
 Identities = 112/135 (82%)
 Strand = Plus / Plus

                                                                       
Query: 61  catgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagct 120
           |||||| || ||||||| ||||||  | ||||||||  |||||||||| || ||||||||
Sbjct: 104 catgggtggaggcaacggtcagaaagcgaagatggctcgggagaggaatctggagaagct 163

                                                                       
Query: 121 gaagggcggcaaggggagccagctcgaggccaacaagaaggccatgaacatccagtgcaa 180
           |||||| |  || || || ||||||||  | ||||| ||||||||||| |||||||||||
Sbjct: 164 gaagggtgctaaaggaagtcagctcgatacgaacaaaaaggccatgaatatccagtgcaa 223

                          
Query: 181 gatatgcatgcagac 195
           | |||| ||||||||
Sbjct: 224 ggtatgtatgcagac 238
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                        
Query: 134    gggagccagctcgaggccaacaagaaggccatgaacatccag 175
              ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 796779 gggagccagcttgaggccaacaagaaggccatgaacatccag 796820



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                          
Query: 62     atgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagctg 121
              |||||||||||||| |  |||||||| ||||||||||||||||||||| | ||||||   
Sbjct: 796572 atgggcggcggcaatgggcagaagtcgaagatggcgagggagaggaacatggagaagaac 796631

                            
Query: 122    aagggcggcaaggg 135
              ||||||| ||||||
Sbjct: 796632 aagggcgccaaggg 796645



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 173    cagtgcaagatatgcatgcagactttc 199
              |||||||||||||||||||||||||||
Sbjct: 797600 cagtgcaagatatgcatgcagactttc 797626



 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 53       tcaacagccatgggcggcg 71
                |||||||||||||||||||
Sbjct: 15744917 tcaacagccatgggcggcg 15744935
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>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1513_F02
          Length = 126845

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                        
Query: 134    gggagccagctcgaggccaacaagaaggccatgaacatccag 175
              ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 116586 gggagccagcttgaggccaacaagaaggccatgaacatccag 116627



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                          
Query: 62     atgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgagaagctg 121
              |||||||||||||| |  |||||||| ||||||||||||||||||||| | ||||||   
Sbjct: 116379 atgggcggcggcaatgggcagaagtcgaagatggcgagggagaggaacatggagaagaac 116438

                            
Query: 122    aagggcggcaaggg 135
              ||||||| ||||||
Sbjct: 116439 aagggcgccaaggg 116452



 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 173    cagtgcaagatatgcatgcagactttc 199
              |||||||||||||||||||||||||||
Sbjct: 117407 cagtgcaagatatgcatgcagactttc 117433
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                          
Query: 134      gggagccagctcgaggccaacaagaaggccatgaacatccag 175
                ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 18392055 gggagccagcttgagaccaacaagaaggccatgaacatccag 18392096



 Score = 46.1 bits (23), Expect = 0.041
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 62       atgggcggcggcaacgctcagaagtccaagatggc 96
                ||||||||||||||||  |||||||||| ||||||
Sbjct: 18391861 atgggcggcggcaacgggcagaagtccaggatggc 18391895
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>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete
              sequence
          Length = 159579

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                        
Query: 134    gggagccagctcgaggccaacaagaaggccatgaacatccag 175
              ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 158486 gggagccagcttgagaccaacaagaaggccatgaacatccag 158527



 Score = 46.1 bits (23), Expect = 0.041
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 62     atgggcggcggcaacgctcagaagtccaagatggc 96
              ||||||||||||||||  |||||||||| ||||||
Sbjct: 158292 atgggcggcggcaacgggcagaagtccaggatggc 158326
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                          
Query: 134      gggagccagctcgaggccaacaagaaggccatgaacatccag 175
                ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 18386096 gggagccagcttgagaccaacaagaaggccatgaacatccag 18386137



 Score = 46.1 bits (23), Expect = 0.041
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 62       atgggcggcggcaacgctcagaagtccaagatggc 96
                ||||||||||||||||  |||||||||| ||||||
Sbjct: 18385902 atgggcggcggcaacgggcagaagtccaggatggc 18385936
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>gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genomic sequence, complete
             sequence
          Length = 90673

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                       
Query: 134   gggagccagctcgaggccaacaagaaggccatgaacatccag 175
             ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 89160 gggagccagcttgagaccaacaagaaggccatgaacatccag 89119



 Score = 46.1 bits (23), Expect = 0.041
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 62    atgggcggcggcaacgctcagaagtccaagatggc 96
             ||||||||||||||||  |||||||||| ||||||
Sbjct: 89354 atgggcggcggcaacgggcagaagtccaggatggc 89320
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>gb|AC144765.19| Medicago truncatula clone mth2-35o11, complete sequence
          Length = 130836

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 57    cagccatgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgaga 116
             |||||||||| || || |||| ||| ||| | ||||||||  | ||||||||||||||||
Sbjct: 75653 cagccatgggtggaggtaacggtcaaaaggctaagatggctcgcgagaggaacctcgaga 75712

                     
Query: 117   agctgaag 124
             ||| ||||
Sbjct: 75713 agcagaag 75720
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>gb|AC137703.42| Medicago truncatula clone mth2-11d24, complete sequence
          Length = 127446

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                          
Query: 57     cagccatgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgaga 116
              |||||||||| || || |||| ||| ||| | ||||||||  | ||||||||||||||||
Sbjct: 125986 cagccatgggtggaggtaacggtcaaaaggctaagatggctcgcgagaggaacctcgaga 125927

                      
Query: 117    agctgaag 124
              ||| ||||
Sbjct: 125926 agcagaag 125919
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 111     tcgagaagctgaagggcggca 131
               |||||||||||||||||||||
Sbjct: 2620630 tcgagaagctgaagggcggca 2620650



 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 145     cgaggccaacaagaaggccatga 167
               |||||||| ||||||||||||||
Sbjct: 8066306 cgaggccagcaagaaggccatga 8066328



 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 116    aagctgaagggcggcaagg 134
              |||||||||||||||||||
Sbjct: 203330 aagctgaagggcggcaagg 203348
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>emb|AJ012688.1|CAR012688 Cicer arietinum mRNA for hypothetical protein, clone Can40-1
          Length = 534

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 56  acagccatgggcggcggcaacgctcagaagtccaagatggcgagggagaggaacctcgag 115
           ||||||||||| || || ||||  || ||| | ||||||||  | |||||||||||||||
Sbjct: 42  acagccatgggaggaggtaacggccaaaaggcaaagatggctcgcgagaggaacctcgag 101

                    
Query: 116 aagctgaag 124
           |||| ||||
Sbjct: 102 aagcagaag 110
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>ref|XM_511542.1| PREDICTED: Pan troglodytes similar to Histone deacetylase 5 (HD5)
            (Antigen NY-CO-9) (LOC454721), mRNA
          Length = 4995

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 4161 cgccgaggaatccacagccatggg 4184
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>ref|XM_365780.1| Magnaporthe grisea 70-15 hypothetical protein (MG02482.4) partial
            mRNA
          Length = 2523

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 65   ggcggcggcaacgctcagaagtccaaga 92
            ||||||||||||| | ||||||||||||
Sbjct: 1639 ggcggcggcaacggtaagaagtccaaga 1666
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>gb|BC051824.1| Homo sapiens histone deacetylase 5, transcript variant 1, mRNA (cDNA
            clone MGC:60081 IMAGE:6043491), complete cds
          Length = 3675

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 2710 cgccgaggaatccacagccatggg 2733
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>ref|NM_001015053.1| Homo sapiens histone deacetylase 5 (HDAC5), transcript variant 3,
            mRNA
          Length = 5327

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 2834 cgccgaggaatccacagccatggg 2857
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    cggcaaggggagccagctcg 146
              ||||||||||||||||||||
Sbjct: 513125 cggcaaggggagccagctcg 513144
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>ref|NM_005474.4| Homo sapiens histone deacetylase 5 (HDAC5), transcript variant 1,
            mRNA
          Length = 5324

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 2831 cgccgaggaatccacagccatggg 2854
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>gb|BC038423.1| Homo sapiens, Similar to histone deacetylase 5, clone IMAGE:4933587,
            mRNA
          Length = 3640

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 1113 cgccgaggaatccacagccatggg 1136
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>emb|CR859595.1| Pongo pygmaeus mRNA; cDNA DKFZp459O115 (from clone DKFZp459O115)
          Length = 3603

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 2644 cgccgaggaatccacagccatggg 2667
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>dbj|AK075095.1| Homo sapiens cDNA FLJ90614 fis, clone PLACE1002080, highly similar to
            Homo sapiens antigen NY-CO-9 (NY-CO-9) mRNA
          Length = 2601

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 1479 cgccgaggaatccacagccatggg 1502
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>dbj|AK027734.1| Homo sapiens cDNA FLJ14828 fis, clone OVARC1000915, highly similar
           to Homo sapiens histone deacetylase 5 mRNA
          Length = 1745

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 43  cgccgaggaatcaacagccatggg 66
           |||||||||||| |||||||||||
Sbjct: 649 cgccgaggaatccacagccatggg 672
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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 141    agctcgaggccaacaagaaggcca 164
              ||||||||||||| ||||||||||
Sbjct: 404785 agctcgaggccaagaagaaggcca 404808
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>dbj|AB177853.1| Homo sapiens mRNA for KIAA0600 splice variant 1
          Length = 2233

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 1283 cgccgaggaatccacagccatggg 1306
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>dbj|AK110188.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-A02, full
            insert sequence
          Length = 3343

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   gccatgggcggcggcaacgc 78
            ||||||||||||||||||||
Sbjct: 2508 gccatgggcggcggcaacgc 2527
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>gb|AF132608.1|AF132608 Homo sapiens histone deacetylase 5 mRNA, complete cds
          Length = 3369

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 2499 cgccgaggaatccacagccatggg 2522
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>gb|AF039691.1|AF039691 Homo sapiens antigen NY-CO-9 (NY-CO-9) mRNA, partial cds
          Length = 2885

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 1936 cgccgaggaatccacagccatggg 1959
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>dbj|AB011172.2| Homo sapiens mRNA for KIAA0600 protein, partial cds
          Length = 5040

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 43   cgccgaggaatcaacagccatggg 66
            |||||||||||| |||||||||||
Sbjct: 2548 cgccgaggaatccacagccatggg 2571
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 114    agaagctgaagggcggcaa 132
              |||||||||||||||||||
Sbjct: 561154 agaagctgaagggcggcaa 561136
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>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0063D09 map S1559, complete sequence
          Length = 190721

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 59    gccatgggcggcggcaacgctca 81
             ||||||||||||||| |||||||
Sbjct: 57436 gccatgggcggcggcgacgctca 57458
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>ref|XM_368524.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
            (MG00720.4) partial mRNA
          Length = 2205

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 141  agctcgaggccaacaagaaggcc 163
            |||||||||||||||| ||||||
Sbjct: 2003 agctcgaggccaacaacaaggcc 2025
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>gb|AF535176.1| Enterococcus faecium strain CIP 103014 RNA polymerase beta subunit
           (rpoB) gene, partial cds
          Length = 697

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 80  cagaagtccaagatggcga 98
           |||||||||||||||||||
Sbjct: 623 cagaagtccaagatggcga 605
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>gb|AY167138.1| Enterococcus faecium isolate 343-3 DNA-dependent RNA polymerase
            subunit beta (rpoB) gene, complete cds
          Length = 3884

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 80   cagaagtccaagatggcga 98
            |||||||||||||||||||
Sbjct: 2651 cagaagtccaagatggcga 2669
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>ref|XM_799499.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053504411.10) partial mRNA
          Length = 1737

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 4    accaaatttccgccgaaccagaa 26
            |||||||||||||||||| ||||
Sbjct: 1046 accaaatttccgccgaacgagaa 1024
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>ref|XM_800219.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053505009.10) partial mRNA
          Length = 1737

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 4    accaaatttccgccgaaccagaa 26
            |||||||||||||||||| ||||
Sbjct: 1046 accaaatttccgccgaacgagaa 1024
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>gb|AF226997.1| Cladosporium fulvum methionine synthase gene, complete cds
          Length = 2307

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 136  gagccagctcgaggccaac 154
            |||||||||||||||||||
Sbjct: 1140 gagccagctcgaggccaac 1158
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>gb|AY069953.1| Hordeum vulgare APETALA2-like protein (AP2L1) mRNA, complete cds
          Length = 1815

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 92   atggcgagggagaggaacc 110
            |||||||||||||||||||
Sbjct: 1733 atggcgagggagaggaacc 1715
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 59      gccatgggcggcggcaacgctca 81
               ||||||||||||||| |||||||
Sbjct: 3689764 gccatgggcggcggcgacgctca 3689786
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>gb|AC019051.8| Homo sapiens BAC clone RP11-92L24 from 2, complete sequence
          Length = 137248

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 176    tgcaagatatgcatgcaga 194
              |||||||||||||||||||
Sbjct: 124770 tgcaagatatgcatgcaga 124752
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>gb|AC106720.8| Homo sapiens 3 BAC RP11-26M20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92354

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    gctcagaagtccaagatgg 95
             |||||||||||||||||||
Sbjct: 83521 gctcagaagtccaagatgg 83539
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>gb|AF242881.1|AF242881 Agrobacterium tumefaciens octopine-type Ti plasmid, complete sequence
          Length = 194140

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 107    aacctcgagaagctgaagg 125
              |||||||||||||||||||
Sbjct: 132760 aacctcgagaagctgaagg 132742
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>dbj|AP005752.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0075N02
          Length = 186945

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     tcaacagccatgggcggcg 71
              |||||||||||||||||||
Sbjct: 142774 tcaacagccatgggcggcg 142792
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 59      gccatgggcggcggcaacgctca 81
               ||||||||||||||| |||||||
Sbjct: 3698458 gccatgggcggcggcgacgctca 3698480
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>emb|AL645547.14| Mouse DNA sequence from clone RP23-158M12 on chromosome X, complete
            sequence
          Length = 173477

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 175  gtgcaagatatgcatgcag 193
            |||||||||||||||||||
Sbjct: 6585 gtgcaagatatgcatgcag 6567
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>gb|M13006.1|BOVGTPA Bovine GTP-binding stimulatory protein of adenylate cyclase,
           alpha-subunit (adenylate cyclase-alpha) mRNA, complete
           cds
          Length = 1493

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 138 gccagctcgaggccaacaagaag 160
           |||||| ||||||||||||||||
Sbjct: 55  gccagcgcgaggccaacaagaag 77


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,534,989
Number of Sequences: 3902068
Number of extensions: 1534989
Number of successful extensions: 112142
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111248
Number of HSP's gapped (non-prelim): 888
length of query: 200
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 178
effective length of database: 17,147,199,772
effective search space: 3052201559416
effective search space used: 3052201559416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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