ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA 190 5e-46
2emb|Z66529.1|HVGLTP4X9 H.vulgare Ltp4.2 gene 96 2e-17
3gb|U63993.1|HVU63993 Hordeum vulgare lipid transfer protein (blt... 96 2e-17
4emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene 70 1e-09
5emb|X68656.1|HVCW19 H.vulgare Cw-19 mRNA 70 1e-09
6gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein ... 60 1e-06
7emb|AJ852557.1| Triticum aestivum ltp9.5b gene for type 1 non sp... 60 1e-06
8gb|AY789644.1| Triticum aestivum lipid transfer protein 4 (LTP4)... 50 0.001
9gb|AY754742.1| Triticum aestivum lipid transfer protein (LTP2) m... 50 0.001
10emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid tra... 50 0.001
11gb|U18127.1|HVU18127 Hordeum vulgare phospholipid transfer prote... 50 0.001
12gb|AY566607.1| Triticum aestivum lipid transfer protein (LPT1) g... 44 0.076
13gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein ... 44 0.076
14gb|AY796184.1| Triticum aestivum lipid transfer protein (LTP1) m... 42 0.30
15gb|DQ465677.1| Triticum aestivum clone Lt10B6 non-specific lipid... 42 0.30
16gb|AC011478.3| Homo sapiens chromosome 19 clone CTC-565M22, comp... 40 1.2
17gb|AC145205.2| Homo sapiens chromosome 17, clone RP11-1224M18, c... 38 4.7
18emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific l... 38 4.7
19emb|AL049737.4|HSJ828K20 Human DNA sequence from clone RP5-828K2... 38 4.7
20emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 38 4.7
21emb|AJ852556.1| Triticum aestivum ltp9.2d gene for type 1 non sp... 38 4.7

>emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA
          Length = 705

 Score =  190 bits (96), Expect = 5e-46
 Identities = 99/100 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   tagccatctcatcatctccagctgagctcggctgcgctactattccaaactcattaggga 65
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1   tagccatctcatcatctccagctgagctcggttgcgctactattccaaactcattaggga 60

                                                   
Query: 66  tggctcgcgctgcagctagtcagctcgtgctggtcgccct 105
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggctcgcgctgcagctagtcagctcgtgctggtcgccct 100



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>emb|Z66529.1|HVGLTP4X9 H.vulgare Ltp4.2 gene
          Length = 1567

 Score = 95.6 bits (48), Expect = 2e-17
 Identities = 57/60 (95%)
 Strand = Plus / Plus

                                                                       
Query: 44  actattccaaactcattagggatggctcgcgctgcagctagtcagctcgtgctggtcgcc 103
           |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 644 actattgcaaactccttagggatggctcgcgctgcagctactcagctcgtgctggtcgcc 703



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>gb|U63993.1|HVU63993 Hordeum vulgare lipid transfer protein (blt4.9) gene, complete cds
          Length = 3238

 Score = 95.6 bits (48), Expect = 2e-17
 Identities = 57/60 (95%)
 Strand = Plus / Plus

                                                                        
Query: 44   actattccaaactcattagggatggctcgcgctgcagctagtcagctcgtgctggtcgcc 103
            |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2040 actattgcaaactccttagggatggctcgcgctgcagctactcagctcgtgctggtcgcc 2099



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>emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene
          Length = 1862

 Score = 69.9 bits (35), Expect = 1e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                   
Query: 65   atggctcgcgctgcagctagtcagctcgtgctggtcgcc 103
            ||||||||||||||||||| |||||||||||||||||||
Sbjct: 1030 atggctcgcgctgcagctactcagctcgtgctggtcgcc 1068



 Score = 44.1 bits (22), Expect = 0.076
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 1   aaatctagccatctcatcatctccagctgagctc 34
           ||||||||| |||||||||||||| ||| |||||
Sbjct: 964 aaatctagctatctcatcatctccggcttagctc 997



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>emb|X68656.1|HVCW19 H.vulgare Cw-19 mRNA
          Length = 660

 Score = 69.9 bits (35), Expect = 1e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 65  atggctcgcgctgcagctagtcagctcgtgctggtcgcc 103
           ||||||||||||||||||| |||||||||||||||||||
Sbjct: 46  atggctcgcgctgcagctactcagctcgtgctggtcgcc 84



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>gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein precursor (LTP2) mRNA,
           complete cds
          Length = 730

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 64  gatggctcgcgctgcagctagtcagctcgtgctggtcgccct 105
           |||||||||| ||||||||| | |||||||||||||||||||
Sbjct: 79  gatggctcgcactgcagctactaagctcgtgctggtcgccct 120



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>emb|AJ852557.1| Triticum aestivum ltp9.5b gene for type 1 non specific lipid
           transfer protein precursor
          Length = 496

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                     
Query: 64  gatggctcgcgctgcagctagtcagctcgtgctggtcgccct 105
           |||||||||| ||||||||| | |||||||||||||||||||
Sbjct: 20  gatggctcgcactgcagctactaagctcgtgctggtcgccct 61



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>gb|AY789644.1| Triticum aestivum lipid transfer protein 4 (LTP4) mRNA, complete
           cds
          Length = 345

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 65  atggctcgcgctgcagctagtcagctcgtgctggtcgccct 105
           ||||||||| || |||||| | |||||||||||||||||||
Sbjct: 1   atggctcgcactacagctactaagctcgtgctggtcgccct 41



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>gb|AY754742.1| Triticum aestivum lipid transfer protein (LTP2) mRNA, complete cds
          Length = 348

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 65  atggctcgcgctgcagctagtcagctcgtgctggtcgccct 105
           ||||||||| ||||||||| | | |||||||||||||||||
Sbjct: 1   atggctcgcactgcagctactaaactcgtgctggtcgccct 41



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>emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid transfer protein precursor
          Length = 691

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 75  ctgcagctagtcagctcgtgctggtcgcc 103
           ||||||||| |||||||||||||||||||
Sbjct: 25  ctgcagctactcagctcgtgctggtcgcc 53



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>gb|U18127.1|HVU18127 Hordeum vulgare phospholipid transfer protein precursor gene,
           complete cds
          Length = 573

 Score = 50.1 bits (25), Expect = 0.001
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 75  ctgcagctagtcagctcgtgctggtcgcc 103
           ||||||||| |||||||||||||||||||
Sbjct: 96  ctgcagctactcagctcgtgctggtcgcc 124



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>gb|AY566607.1| Triticum aestivum lipid transfer protein (LPT1) gene, complete cds
          Length = 3448

 Score = 44.1 bits (22), Expect = 0.076
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 64   gatggctcgcgctgcagctagtcagctcgtgctggtcgccct 105
            |||||||||| ||||||| |   |||||||||||||||||||
Sbjct: 2856 gatggctcgcactgcagcaacaaagctcgtgctggtcgccct 2897



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>gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein precursor (LTP1) mRNA,
           complete cds
          Length = 737

 Score = 44.1 bits (22), Expect = 0.076
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 64  gatggctcgcgctgcagctagtcagctcgtgctggtcgccct 105
           |||||||||| ||||||| |   |||||||||||||||||||
Sbjct: 60  gatggctcgcactgcagcaacaaagctcgtgctggtcgccct 101



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>gb|AY796184.1| Triticum aestivum lipid transfer protein (LTP1) mRNA, complete cds
          Length = 348

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 65  atggctcgcgctgcagctagtcagctcgtgctggtcgccct 105
           ||||||||| ||||||| |   |||||||||||||||||||
Sbjct: 1   atggctcgcactgcagcaacaaagctcgtgctggtcgccct 41



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>gb|DQ465677.1| Triticum aestivum clone Lt10B6 non-specific lipid transfer protein
           1 precursor, mRNA, complete cds
          Length = 348

 Score = 42.1 bits (21), Expect = 0.30
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 65  atggctcgcgctgcagctagtcagctcgtgctggtcgccct 105
           ||||||||| ||||||| |   |||||||||||||||||||
Sbjct: 1   atggctcgcactgcagcaacaaagctcgtgctggtcgccct 41



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>gb|AC011478.3| Homo sapiens chromosome 19 clone CTC-565M22, complete sequence
          Length = 100147

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aatctagccatctcatcatctcca 25
             ||||||||||||||||| ||||||
Sbjct: 90115 aatctagccatctcatcctctcca 90138



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>gb|AC145205.2| Homo sapiens chromosome 17, clone RP11-1224M18, complete sequence
          Length = 81310

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 9    ccatctcatcatctccagc 27
            |||||||||||||||||||
Sbjct: 3631 ccatctcatcatctccagc 3649



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>emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific lipid transfer
          protein precursor (ltp9.2 gene)
          Length = 708

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                 
Query: 1  aaatctagccatctcatcatctc 23
          ||||||||| |||||||||||||
Sbjct: 3  aaatctagctatctcatcatctc 25



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>emb|AL049737.4|HSJ828K20 Human DNA sequence from clone RP5-828K20 on chromosome 20 Contains the
             ST13P gene for suppression of tumorigenicity 13 (colon
             carcinoma) (Hsp70 interacting protein) pseudogene,
             complete sequence
          Length = 59312

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    tcatcatctccagctgagc 32
             |||||||||||||||||||
Sbjct: 19873 tcatcatctccagctgagc 19891



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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 68      gctcgcgctgcagctagtc 86
               |||||||||||||||||||
Sbjct: 2428929 gctcgcgctgcagctagtc 2428947



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>emb|AJ852556.1| Triticum aestivum ltp9.2d gene for type 1 non specific lipid transfer
            protein precursor
          Length = 2087

 Score = 38.2 bits (19), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 1    aaatctagccatctcatcatctc 23
            ||||||||| |||||||||||||
Sbjct: 1194 aaatctagctatctcatcatctc 1216


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 829,393
Number of Sequences: 3902068
Number of extensions: 829393
Number of successful extensions: 52836
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52806
Number of HSP's gapped (non-prelim): 30
length of query: 105
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 84
effective length of database: 17,151,101,840
effective search space: 1440692554560
effective search space used: 1440692554560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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