ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MAM_DROME (P21519) Neurogenic protein mastermind 29 4.0
2DECA_DROPS (P91699) Protein decapentaplegic precursor (Protein D... 28 5.3
3IE18_PRVIF (P11675) Immediate-early protein IE180 28 9.0
4LFY_ARATH (Q00958) LEAFY protein 28 9.0
5IE18_PRVKA (P33479) Immediate-early protein IE180 28 9.0

>MAM_DROME (P21519) Neurogenic protein mastermind|
          Length = 1594

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 152 GGGGAGEHDSGRGEHEHGQNQQRGDLRG 69
           GGGG G +++  G+H   Q+QQ+   +G
Sbjct: 376 GGGGNGNNNNNGGDHHQQQHQQQQQQQG 403



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>DECA_DROPS (P91699) Protein decapentaplegic precursor (Protein DPP-C)|
          Length = 621

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 152 GGGGAGEHDSGRGEHEHGQNQQRGDLRGLH---CSNHL*ALAIDRVRFTW 12
           GGGGAGE   G G   + ++Q+R   R  H   C  H  +L +D     W
Sbjct: 487 GGGGAGEGGKGNGGGRNRRHQRRPARRKNHEETCRRH--SLYVDFADVGW 534



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>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 158 APGGGGAGEHDSGRGEHEH 102
           APGGGGA      RG H H
Sbjct: 249 APGGGGAPSGGGDRGRHHH 267



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>LFY_ARATH (Q00958) LEAFY protein|
          Length = 424

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 152 GGGGAGEHDSGRGEHEHGQNQQR 84
           GGGG+G  D+G+G+ +  Q Q+R
Sbjct: 176 GGGGSGYWDAGQGKMKKQQQQRR 198



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>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 158 APGGGGAGEHDSGRGEHEH 102
           APGGGGA      RG H H
Sbjct: 241 APGGGGAPSAGGDRGRHHH 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,056,936
Number of Sequences: 219361
Number of extensions: 268090
Number of successful extensions: 1688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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