| Clone Name | baet80c09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024N16, full insert sequence Length = 3085 Score = 75.8 bits (38), Expect = 2e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 2 acaatgtcggagtacagcatgggcaactgtcgcttcttcacctacgaggagatgcacaac 61 ||||||||||||| |||||||||||| ||||| |||||||| |||||||| ||||| | Sbjct: 1719 acaatgtcggagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccag 1778 Query: 62 atcacaaacggttt 75 |||||||| ||||| Sbjct: 1779 atcacaaatggttt 1792
>ref|NM_183523.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3084 Score = 67.9 bits (34), Expect = 5e-09 Identities = 64/74 (86%) Strand = Plus / Plus Query: 2 acaatgtcggagtacagcatgggcaactgtcgcttcttcacctacgaggagatgcacaac 61 |||||||| |||| |||||||||||| ||||| |||||||| |||||||| ||||| | Sbjct: 1718 acaatgtcagagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccag 1777 Query: 62 atcacaaacggttt 75 |||||||| ||||| Sbjct: 1778 atcacaaatggttt 1791
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 5e-09 Identities = 64/74 (86%) Strand = Plus / Minus Query: 2 acaatgtcggagtacagcatgggcaactgtcgcttcttcacctacgaggagatgcacaac 61 |||||||| |||| |||||||||||| ||||| |||||||| |||||||| ||||| | Sbjct: 555187 acaatgtcagagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccag 555128 Query: 62 atcacaaacggttt 75 |||||||| ||||| Sbjct: 555127 atcacaaatggttt 555114
>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439B06 Length = 135991 Score = 67.9 bits (34), Expect = 5e-09 Identities = 64/74 (86%) Strand = Plus / Minus Query: 2 acaatgtcggagtacagcatgggcaactgtcgcttcttcacctacgaggagatgcacaac 61 |||||||| |||| |||||||||||| ||||| |||||||| |||||||| ||||| | Sbjct: 29792 acaatgtcagagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccag 29733 Query: 62 atcacaaacggttt 75 |||||||| ||||| Sbjct: 29732 atcacaaatggttt 29719
>emb|AL358196.11| Human DNA sequence from clone RP11-596L14 on chromosome 10, complete sequence Length = 71225 Score = 42.1 bits (21), Expect = 0.28 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 atgggcaactgtcgcttcttc 40 ||||||||||||||||||||| Sbjct: 64906 atgggcaactgtcgcttcttc 64886
>emb|AL512884.15| Human DNA sequence from clone RP13-775K13 on chromosome Xp11.1-11.22, complete sequence Length = 157064 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 acatcacaaacggtttctc 78 ||||||||||||||||||| Sbjct: 113051 acatcacaaacggtttctc 113033
>gb|AC155730.9| Mus musculus 6 BAC RP24-182M11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 171603 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 34 cttcttcacctacgaggag 52 ||||||||||||||||||| Sbjct: 80167 cttcttcacctacgaggag 80149
>gb|AC122715.2| Homo sapiens chromosome 5 clone RP11-52C13, complete sequence Length = 167763 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 acatcacaaacggtttctc 78 ||||||||||||||||||| Sbjct: 158896 acatcacaaacggtttctc 158914
>gb|AC110283.4| Homo sapiens chromosome 11, clone RP11-350A7, complete sequence Length = 162170 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 acatcacaaacggtttctc 78 ||||||||||||||||||| Sbjct: 36478 acatcacaaacggtttctc 36496
>gb|AC087377.7| Homo sapiens chromosome 11, clone RP11-292L2, complete sequence Length = 190650 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 acatcacaaacggtttctc 78 ||||||||||||||||||| Sbjct: 13637 acatcacaaacggtttctc 13619
>gb|AC091644.7| Homo sapiens chromosome 11, clone RP11-808H14, complete sequence Length = 183187 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 acatcacaaacggtttctc 78 ||||||||||||||||||| Sbjct: 8592 acatcacaaacggtttctc 8574
>emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in linkage group 11, complete sequence Length = 197146 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 agatgcacaacatcacaaa 69 ||||||||||||||||||| Sbjct: 116918 agatgcacaacatcacaaa 116936
>gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chromosome y, complete sequence Length = 198653 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 acatcacaaacggtttctc 78 ||||||||||||||||||| Sbjct: 22771 acatcacaaacggtttctc 22753
>dbj|AP001686.1| Homo sapiens genomic DNA, chromosome 21q, section 30/105 Length = 340000 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 tcaaaacctgctaggggaa 100 ||||||||||||||||||| Sbjct: 329211 tcaaaacctgctaggggaa 329229
>gb|AC126750.3| Homo sapiens chromosome 5 clone CTD-2055H2, complete sequence Length = 120765 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 60 acatcacaaacggtttctc 78 ||||||||||||||||||| Sbjct: 107605 acatcacaaacggtttctc 107623
>gb|AC122694.2| Homo sapiens chromosome 5 clone CTD-2013M15, complete sequence Length = 145789 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 acatcacaaacggtttctc 78 ||||||||||||||||||| Sbjct: 112633 acatcacaaacggtttctc 112615
>dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B658E16, LL56-APP region, complete sequence Length = 140249 Score = 38.2 bits (19), Expect = 4.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 tcaaaacctgctaggggaa 100 ||||||||||||||||||| Sbjct: 19016 tcaaaacctgctaggggaa 19034 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 531,481 Number of Sequences: 3902068 Number of extensions: 531481 Number of successful extensions: 40164 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40112 Number of HSP's gapped (non-prelim): 52 length of query: 100 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 79 effective length of database: 17,151,101,840 effective search space: 1354937045360 effective search space used: 1354937045360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)