ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK101096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 2e-11
2ref|NM_183523.2| Oryza sativa (japonica cultivar-group), mRNA 68 5e-09
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 5e-09
4dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic D... 68 5e-09
5emb|AL358196.11| Human DNA sequence from clone RP11-596L14 on ch... 42 0.28
6emb|AL512884.15| Human DNA sequence from clone RP13-775K13 on ch... 38 4.4
7gb|AC155730.9| Mus musculus 6 BAC RP24-182M11 (Roswell Park Canc... 38 4.4
8gb|AC122715.2| Homo sapiens chromosome 5 clone RP11-52C13, compl... 38 4.4
9gb|AC110283.4| Homo sapiens chromosome 11, clone RP11-350A7, com... 38 4.4
10gb|AC087377.7| Homo sapiens chromosome 11, clone RP11-292L2, com... 38 4.4
11gb|AC091644.7| Homo sapiens chromosome 11, clone RP11-808H14, co... 38 4.4
12emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in... 38 4.4
13gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chrom... 38 4.4
14dbj|AP001686.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 4.4
15gb|AC126750.3| Homo sapiens chromosome 5 clone CTD-2055H2, compl... 38 4.4
16gb|AC122694.2| Homo sapiens chromosome 5 clone CTD-2013M15, comp... 38 4.4
17dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 38 4.4

>dbj|AK101096.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024N16, full
            insert sequence
          Length = 3085

 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                        
Query: 2    acaatgtcggagtacagcatgggcaactgtcgcttcttcacctacgaggagatgcacaac 61
            ||||||||||||| |||||||||||| ||||| |||||||| ||||||||  ||||| | 
Sbjct: 1719 acaatgtcggagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccag 1778

                          
Query: 62   atcacaaacggttt 75
            |||||||| |||||
Sbjct: 1779 atcacaaatggttt 1792



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>ref|NM_183523.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3084

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 2    acaatgtcggagtacagcatgggcaactgtcgcttcttcacctacgaggagatgcacaac 61
            |||||||| |||| |||||||||||| ||||| |||||||| ||||||||  ||||| | 
Sbjct: 1718 acaatgtcagagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccag 1777

                          
Query: 62   atcacaaacggttt 75
            |||||||| |||||
Sbjct: 1778 atcacaaatggttt 1791



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                          
Query: 2      acaatgtcggagtacagcatgggcaactgtcgcttcttcacctacgaggagatgcacaac 61
              |||||||| |||| |||||||||||| ||||| |||||||| ||||||||  ||||| | 
Sbjct: 555187 acaatgtcagagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccag 555128

                            
Query: 62     atcacaaacggttt 75
              |||||||| |||||
Sbjct: 555127 atcacaaatggttt 555114



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>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0439B06
          Length = 135991

 Score = 67.9 bits (34), Expect = 5e-09
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                         
Query: 2     acaatgtcggagtacagcatgggcaactgtcgcttcttcacctacgaggagatgcacaac 61
             |||||||| |||| |||||||||||| ||||| |||||||| ||||||||  ||||| | 
Sbjct: 29792 acaatgtcagagttcagcatgggcaattgtcgattcttcacttacgaggaattgcaccag 29733

                           
Query: 62    atcacaaacggttt 75
             |||||||| |||||
Sbjct: 29732 atcacaaatggttt 29719



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>emb|AL358196.11| Human DNA sequence from clone RP11-596L14 on chromosome 10, complete
             sequence
          Length = 71225

 Score = 42.1 bits (21), Expect = 0.28
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    atgggcaactgtcgcttcttc 40
             |||||||||||||||||||||
Sbjct: 64906 atgggcaactgtcgcttcttc 64886



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>emb|AL512884.15| Human DNA sequence from clone RP13-775K13 on chromosome Xp11.1-11.22,
              complete sequence
          Length = 157064

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     acatcacaaacggtttctc 78
              |||||||||||||||||||
Sbjct: 113051 acatcacaaacggtttctc 113033



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>gb|AC155730.9| Mus musculus 6 BAC RP24-182M11 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 171603

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    cttcttcacctacgaggag 52
             |||||||||||||||||||
Sbjct: 80167 cttcttcacctacgaggag 80149



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>gb|AC122715.2| Homo sapiens chromosome 5 clone RP11-52C13, complete sequence
          Length = 167763

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     acatcacaaacggtttctc 78
              |||||||||||||||||||
Sbjct: 158896 acatcacaaacggtttctc 158914



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>gb|AC110283.4| Homo sapiens chromosome 11, clone RP11-350A7, complete sequence
          Length = 162170

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    acatcacaaacggtttctc 78
             |||||||||||||||||||
Sbjct: 36478 acatcacaaacggtttctc 36496



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>gb|AC087377.7| Homo sapiens chromosome 11, clone RP11-292L2, complete sequence
          Length = 190650

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    acatcacaaacggtttctc 78
             |||||||||||||||||||
Sbjct: 13637 acatcacaaacggtttctc 13619



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>gb|AC091644.7| Homo sapiens chromosome 11, clone RP11-808H14, complete sequence
          Length = 183187

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 60   acatcacaaacggtttctc 78
            |||||||||||||||||||
Sbjct: 8592 acatcacaaacggtttctc 8574



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>emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in linkage group 11,
              complete sequence
          Length = 197146

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 51     agatgcacaacatcacaaa 69
              |||||||||||||||||||
Sbjct: 116918 agatgcacaacatcacaaa 116936



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>gb|AC175497.2| Pan troglodytes BAC clone CH251-951E13 from chromosome y, complete
             sequence
          Length = 198653

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    acatcacaaacggtttctc 78
             |||||||||||||||||||
Sbjct: 22771 acatcacaaacggtttctc 22753



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>dbj|AP001686.1| Homo sapiens genomic DNA, chromosome 21q, section 30/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 82     tcaaaacctgctaggggaa 100
              |||||||||||||||||||
Sbjct: 329211 tcaaaacctgctaggggaa 329229



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>gb|AC126750.3| Homo sapiens chromosome 5 clone CTD-2055H2, complete sequence
          Length = 120765

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     acatcacaaacggtttctc 78
              |||||||||||||||||||
Sbjct: 107605 acatcacaaacggtttctc 107623



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>gb|AC122694.2| Homo sapiens chromosome 5 clone CTD-2013M15, complete sequence
          Length = 145789

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 60     acatcacaaacggtttctc 78
              |||||||||||||||||||
Sbjct: 112633 acatcacaaacggtttctc 112615



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>dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B658E16,
             LL56-APP region, complete sequence
          Length = 140249

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    tcaaaacctgctaggggaa 100
             |||||||||||||||||||
Sbjct: 19016 tcaaaacctgctaggggaa 19034


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 531,481
Number of Sequences: 3902068
Number of extensions: 531481
Number of successful extensions: 40164
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40112
Number of HSP's gapped (non-prelim): 52
length of query: 100
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 79
effective length of database: 17,151,101,840
effective search space: 1354937045360
effective search space used: 1354937045360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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