>THIM_CLOTE (Q893Q9) Hydroxyethylthiazole kinase (EC 2.7.1.50)|
           (4-methyl-5-beta-hydroxyethylthiazole kinase) (Thz
           kinase) (TH kinase)
          Length = 274

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 23  RGNFREAAAVSPQTAATSGLANQLTDATSPPHSRGRLAAAAGEPERRVVG 172
           RGN  E   +S   A+T G+  +  D T+P   R RL  +  E    V+G
Sbjct: 122 RGNISEVKVLSGMNASTKGVDAESWDETNPIEERIRLVKSLSEKYNAVIG 171

>SMAL1_BOVIN (Q9TTA5) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A-like protein 1 (EC
           3.6.1.-) (Sucrose nonfermenting protein 2-like 1)
           (DNA-dependent ATPase A) (HepA-related protein)
          Length = 941

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
 Frame = +2

Query: 29  NFREAAAVS-------PQTAATSG---LANQLTDATSPPHSRGRLAAAAGEPERRVVGS 175
           NF+E AA S       P+  A  G    + Q    +  P + GRL   AG P  RVVGS
Sbjct: 175 NFQETAASSCGQPPRDPELEARIGRPSTSGQNISGSVMPRTEGRLQQKAGTPLHRVVGS 233

>MTRB_MYCTU (Q50496) Sensor histidine kinase mtrB (EC 2.7.13.3)|
          Length = 567

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 4   IPAWGLPGEFPGSRRRLPANRGHKRIGQP 90
           + AWG PGE    R  LP  RGHK    P
Sbjct: 499 LEAWGEPGEGACFRLTLPMVRGHKVTTSP 527

>MTRB_MYCBO (P59963) Sensor histidine kinase mtrB (EC 2.7.13.3)|
          Length = 567

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 4   IPAWGLPGEFPGSRRRLPANRGHKRIGQP 90
           + AWG PGE    R  LP  RGHK    P
Sbjct: 499 LEAWGEPGEGACFRLTLPLVRGHKVTTSP 527

>MTRB_MYCLE (Q9CCJ1) Sensor histidine kinase mtrB (EC 2.7.13.3)|
          Length = 562

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 4   IPAWGLPGEFPGSRRRLPANRGHKRIGQPTDGRYLSSSLSRATCGG 141
           + AWG PG+    R  LP  RGHK    P   + +     +A+  G
Sbjct: 499 LEAWGEPGQGACFRLTLPLVRGHKVTTSPLPMKPILQPSPQASTAG 544


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,580,656
Number of Sequences: 219361
Number of extensions: 381301
Number of successful extensions: 1528
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)