ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet80b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl... 56 3e-08
2CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla... 54 8e-08
3CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloropla... 54 1e-07
4CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla... 54 1e-07
5CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl... 52 4e-07
6CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast... 50 2e-06
7CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla... 50 2e-06
8CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl... 49 3e-06
9CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast... 48 6e-06
10CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop... 48 6e-06
11CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl... 48 6e-06
12CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla... 48 6e-06
13CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl... 48 8e-06
14CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla... 47 1e-05
15CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla... 47 1e-05
16CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl... 46 2e-05
17CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl... 46 3e-05
18CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast... 45 4e-05
19CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl... 45 4e-05
20CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop... 45 4e-05
21CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla... 45 5e-05
22CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla... 45 7e-05
23CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl... 45 7e-05
24CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl... 44 9e-05
25CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast... 44 1e-04
26CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla... 44 1e-04
27CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl... 44 1e-04
28CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla... 43 2e-04
29CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl... 43 2e-04
30CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop... 43 3e-04
31CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast... 42 3e-04
32CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ... 39 0.003
33CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast... 39 0.003
34CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloropl... 39 0.004
35CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe... 36 0.024
36CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe... 35 0.040
37CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloropl... 35 0.068
38CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl... 35 0.068
39CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop... 33 0.26
40CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast... 30 2.2
41CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast... 29 3.8
42CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ... 29 3.8
43RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembra... 28 8.4 
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 32/58 (55%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           MAA TMALSSP     A+KL+  AS + G GRITMR           PWYGPDRV YL
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58
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>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 30/54 (55%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGASYVLGGGRITMRXXXX--XXXXXXXPWYGPDRVLYL 227
           MAA TMALSSPA+    A+ V G GRITMR             PWYG DRVLYL
Sbjct: 1   MAAATMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYL 54
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>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 30/57 (52%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           MAA+TMALSS      AMKLA ++  LG GR++MR           PWYGPDRV YL
Sbjct: 1   MAASTMALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYGPDRVKYL 57
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>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 32/58 (55%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           MAA+TMALSSPA     +KL+ GAS V G GR+TMR           PWYG DRV YL
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYL 58
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>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 29/58 (50%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           MAA TMALSSP     A+KL+  A  + G GR++MR           PWYGPDRV YL
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYL 58
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>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 31/60 (51%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAG-ASYVLGGGRITMRXXXXX--XXXXXXPWYGPDRVLYL 227
           MA++TMALSSP     A+KL   AS ++G GRITMR             PWYGPDRV YL
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYL 60
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>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 32/59 (54%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRXXXXXXXX-XXXPWYGPDRVLYL 227
           MAA+TMALSSPA     +KL+  AS VLG GR+TMR            PWYG DRV YL
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59
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>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXX--PWYGPDRVLYL 227
           MAA+TMALSSP     A+KL+  +S + G G++TMR             PWYGPDRV YL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60
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>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 6/58 (10%)
 Frame = +3

Query: 72  MAATTMALSSPAM-----KLA-GASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           MAA+TMALSSPA+     K+A  +S + G GR++MR           PWYGPDRV YL
Sbjct: 1   MAASTMALSSPALAGKAVKVAPSSSELFGNGRVSMRKTVKAPVSDS-PWYGPDRVKYL 57
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>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASY-VLGGGRITMRXXXXXX--XXXXXPWYGPDRVLYL 227
           MAATTMALSS      A+KL+ +S  + G G++TMR             PWYGPDRV YL
Sbjct: 1   MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYL 60
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>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 30/59 (50%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = +3

Query: 72  MAATTMALSSPAMK------LAGASYVLGGGRITMRXXXXXXXX-XXXPWYGPDRVLYL 227
           MAA+TMALSSPA           AS VLG GR+TMR            PWYG DRV YL
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59
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>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 29/58 (50%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAG---ASYVLGGGRITMRXXXXX---XXXXXXPWYGPDRVLYL 227
           MAA TMALSSP M  A    +S + G  RITMR              PWYG DRVLYL
Sbjct: 1   MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYL 58
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>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
 Frame = +3

Query: 72  MAATTMALSSP----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA+T ALSSP    A+KL+  +S V G G++TMR             PWYGPDRV YL
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYL 59
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>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
 Frame = +3

Query: 72  MAATTMALSSP----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA+T ALSSP    A+KL+  +S V G G++TMR             PWYGPDRV YL
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYL 59
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>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 27/56 (48%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
 Frame = +3

Query: 75  AATTMALSSPAMKLAGASYVLGG-----GRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           AA++MALSSP+  LAG +  LG      GR++MR           PWYGPDRV YL
Sbjct: 3   AASSMALSSPS--LAGKAVKLGPSAPEVGRVSMRKTVTKQVSSGSPWYGPDRVKYL 56
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>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXX--XXXXXPWYGPDRVLYL 227
           MA +TMALSS      A+KL+  +S + G GR+TMR             PWYGPDRV YL
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60
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>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 28/57 (49%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
 Frame = +3

Query: 72  MAATTMALSSPAM---KLAGASYVLGGGRITMRXXXXXX--XXXXXPWYGPDRVLYL 227
           MAA TMA++S A+     AG   V G GRITMR             PWYG DRVLYL
Sbjct: 1   MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKPKPARSGSPWYGADRVLYL 57
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>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 27/61 (44%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
 Frame = +3

Query: 72  MAATTMALSSPAM-------KLAGASYVLGGGRITMRXXXXXX--XXXXXPWYGPDRVLY 224
           MAA++MALSSP +           +S  LGG R TMR             PWYGPDRV Y
Sbjct: 1   MAASSMALSSPTLTGKPVETSANPSSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKY 60

Query: 225 L 227
           L
Sbjct: 61  L 61
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>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA TMALSS      A+KL+  +S + G G++TMR             PWYGPDRV YL
Sbjct: 1   MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYL 60
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>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA TMALSSP     A+K +  +S + G G+ TMR             PWYGPDRV YL
Sbjct: 1   MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 60
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>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 29/57 (50%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGASYVLGG---GRITMRXXXXX--XXXXXXPWYGPDRVLYL 227
           MAA+TMA+SS AM  AG    +G    GRITMR             PWYGPDRV YL
Sbjct: 1   MAASTMAISSTAM--AGTPIKVGSFGEGRITMRKTVGKPKVAASGSPWYGPDRVKYL 55
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>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA+TMALSS      A+KL+  +S + G G++TMR             PWYGP+RV YL
Sbjct: 1   MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYL 60
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>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
 Frame = +3

Query: 69  AMAATTMALSSPAM-----KLAGASYVLGGGRITMRXXXXXX--XXXXXPWYGPDRVLYL 227
           A ++++MALSSP +     KL  +S  LG  R TMR             PWYGPDRV YL
Sbjct: 3   ASSSSSMALSSPTLAGKQLKLNPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYL 62
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>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA TMA+SS      A+ +  +S + G G+ TMR             PWYGPDRV YL
Sbjct: 1   MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 59
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>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAATTM+LSS      A+K   +S ++G  R+ MR             PWYG DRVLYL
Sbjct: 1   MAATTMSLSSSSFAGKAVKNLPSSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYL 59
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>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           M A+TMALSSP     A+KL+  +S + G G+  MR             PWYGPDRV YL
Sbjct: 1   MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYL 60
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>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGA---SYVLGGGRITMRXXXXXX---XXXXXPWYGPDRVLYL 227
           MA++TMALSS A         S + G  R+TMR              PWYGPDRVLYL
Sbjct: 1   MASSTMALSSTAFAGKAVNVPSSLFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYL 58
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>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +3

Query: 72  MAATTMALSSPAM------KLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           MAA TMALSS          L+ +S V G  R++MR           PWYGPDRV YL
Sbjct: 1   MAAATMALSSSTFAGKAVKNLSSSSEVQGDARVSMRKTAATKKVGS-PWYGPDRVKYL 57
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>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA TMALSS      A+ +  +S +   G++TMR             PWYGPDRV YL
Sbjct: 1   MAAATMALSSSSFAGKAVNVPSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYL 59
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>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRXXXXXXX--XXXXPWYGPDRVLYL 227
           MAA TMALSS       +KL+  +S + G G+ TMR             PWYGPDRV YL
Sbjct: 1   MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYL 60
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>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 26/58 (44%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGA---SYVLGGGRITMRXXXXXX---XXXXXPWYGPDRVLYL 227
           MA++TMALSS A         S   G  R+TMR              PWYGPDRVLYL
Sbjct: 1   MASSTMALSSTAFAGKAVNVPSSSFGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYL 58
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>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 93  LSSPAMKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           L+  A+KL+  A  + G  + TMR           PWYGPDRV YL
Sbjct: 3   LAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYL 48
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>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +3

Query: 135 LGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           LG GR++MR           PWYGPDRV YL
Sbjct: 8   LGVGRVSMRKTASKTVSSGSPWYGPDRVKYL 38
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>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor|
           (LHCII type I CAB-1C) (LHCP) (Fragments)
          Length = 265

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPW 200
           MAA TMALSSP     A+KL+  AS + G GRITMR           PW
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPW 49
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>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = +3

Query: 51  CSIRQQAMAATTMALSSPAMK--LAGASYVLGGGRITMRXXXX---XXXXXXXPWYGPDR 215
           C I   A A   ++   P     L   + V G  R+TMR              PWYGPDR
Sbjct: 4   CGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDR 63

Query: 216 VLYL 227
           VLYL
Sbjct: 64  VLYL 67
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>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 35.4 bits (80), Expect = 0.040
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +3

Query: 111 KLAGASYVLGGGRITMRXXX---XXXXXXXXPWYGPDRVLYL 227
           +L G     G  R+TMR              PWYGPDRVLYL
Sbjct: 30  QLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYL 71
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>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type I CAB-1A) (LHCP) (Fragments)
          Length = 265

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 23/49 (46%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPW 200
           MAA  MALSSP     A+KL+  AS   G GRITMR           PW
Sbjct: 1   MAAAAMALSSPSFAGQAVKLSPSASENSGNGRITMRKAVAKSAPSSSPW 49
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>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +3

Query: 111 KLAGASYVLGGGRITMRXXX---XXXXXXXXPWYGPDRVLYL 227
           +L G     G  R+TMR              PWYGPDRV+YL
Sbjct: 30  QLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYL 71
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>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 54  SIRQQAMAA-TTMALSSPAMKLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           +I+Q A A  T +  S+  +   GA   +GGGR++MR            WYGPDR  YL
Sbjct: 5   AIQQSAFAGQTALKQSNELVCKIGA---VGGGRVSMRRTVKSAPTSI--WYGPDRPKYL 58
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>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +3

Query: 141 GGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           GGRITMR            WYGPDR  YL
Sbjct: 30  GGRITMRRTVKSAPQSI--WYGPDRPKYL 56
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>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 205

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 54  SIRQQAMAATTMALSSPAM--KLAGASYVLGGGRITMRXXXXXXXXXXXPWYGPDRVLYL 227
           +I+Q A A  T+      +  K+ G      GGR++MR            WYGPDR  YL
Sbjct: 5   TIQQSAFAGQTLLKPQNELVRKVGG-----NGGRVSMRRTIKSAPESI--WYGPDRPKYL 57
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>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
 Frame = +3

Query: 36  ISSLLCSIRQQAMAATTMALS--------SPAMKLAGASYVLGGGRITMRXXXXXXXXXX 191
           ++S + +   +A+ A T  LS        SP   +A A+     GRITM           
Sbjct: 1   MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAAT----NGRITMGNDL------- 49

Query: 192 XPWYGPDRVLYL 227
             WYGPDRV YL
Sbjct: 50  --WYGPDRVKYL 59
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>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)|
          Length = 474

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 16/61 (26%)
 Frame = -3

Query: 145 PPPRTYEAPASFIAGEESAMVVAAIAC---------CRME-------QSKLLMCGCCCD* 14
           PP  +Y  P S      S+ V+  I+          C++E       QS+   CG CC+ 
Sbjct: 377 PPTSSYVPPTSSYVPPTSSSVIVPISSSWRLPENTICQVERNSHIHPQSQSSCCGACCES 436

Query: 13  W 11
           W
Sbjct: 437 W 437


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.308    0.122    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,778,358
Number of Sequences: 219361
Number of extensions: 243225
Number of successful extensions: 547
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
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