>T2FA_XENLA (Q04870) Transcription initiation factor IIF alpha subunit (EC|
           2.7.11.1) (TFIIF-alpha) (Transcription initiation factor
           RAP74)
          Length = 524

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +1

Query: 1   NQPTTPLINKAPNPPTLRR*ELSWEKRRAGKGDHHQALKKRRKSN*PVVLASRRWPWPPS 180
           ++P TP  +      TLR      E+ + G   +  A K+ +    P   + +  P P S
Sbjct: 390 SRPGTPSPDTGNTSSTLRAAASKLEQSKRGTVSNTPAAKRLKMEAGPQNTSGKSTPQPQS 449

Query: 181 GRLAPSGG 204
           G+  PS G
Sbjct: 450 GKSTPSSG 457

>T2FA_HUMAN (P35269) Transcription initiation factor IIF alpha subunit (EC|
           2.7.11.1) (TFIIF-alpha) (Transcription initiation factor
           RAP74) (General transcription factor IIF polypeptide 1
           74 kDa subunit protein)
          Length = 517

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +1

Query: 1   NQPTTPLINKAPNPPTLRR*ELSWEKRRAGKGDHHQALKKRRKSN*PVVLASRRWPWPPS 180
           ++P TP         TLR      E+ +  +     A K+ R    P  L+ +  P PPS
Sbjct: 385 SRPGTPSAEGGSTSSTLRAAASKLEQGK--RVSEMPAAKRLRLDTGPQSLSGKSTPQPPS 442

Query: 181 GRLAPSGG 204
           G+  P+ G
Sbjct: 443 GKTTPNSG 450

>ZN446_HUMAN (Q9NWS9) Zinc finger protein 446|
          Length = 450

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 203 PPEGARRPDGGHGHRREARTT 141
           PP  A+ P+G HGH+  A T+
Sbjct: 182 PPLAAQSPEGNHGHQEPASTS 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,422,109
Number of Sequences: 219361
Number of extensions: 656911
Number of successful extensions: 1817
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)