ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet80a04 |
|---|---|
| Clone Library Name | barley_pub |
>YHL4_HCMVA (P09698) Hypothetical protein HHLF4| Length = 172 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = -3 Query: 170 SSSPPWETNADQNAPATIEDGFPPRFLTIQERV--RGRGESGV 48 SSSP A Q AP T+ FPP L +++ RGRG G+ Sbjct: 25 SSSPA----AKQPAPGTVAQSFPPGELALRDETGGRGRGTRGI 63
>EXON_VZVD (P09253) Alkaline exonuclease (EC 3.1.11.-)| Length = 551 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = -3 Query: 170 SSSPPWETNADQNAPATIEDGFPPRFLTIQERVRGRGESGVWS 42 +S+ P E ++ A +D LTI+ RG+G++ +W+ Sbjct: 98 TSTQPQEPRPEELASKLTQDDIKRILLTIESETRGQGDNAIWT 140
>FA12_HUMAN (P00748) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman| factor) (HAF) [Contains: Coagulation factor XIIa heavy chain; Beta-factor XIIa part 1; Beta-factor XIIa part 2; Coagulation factor XIIa light chain] Length = 615 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -1 Query: 238 RLHCWSLPVLPSTPRSMTTTMYPPRLRLGKPTPIKMPPPRSRT 110 RLH +P P+ P+ TT PP+ + P K P S T Sbjct: 310 RLHVPLMPAQPAPPKPQPTTRTPPQSQTPGALPAKREQPPSLT 352
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -1 Query: 223 SLPVLPSTPRSMTTTMYPPRLRLGKPTPIKMPPPRSRT 110 S P+ +T S TTT PP + P+P P P + T Sbjct: 1706 SSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTT 1743 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 3/37 (8%) Frame = -1 Query: 226 WSLPVLPS---TPRSMTTTMYPPRLRLGKPTPIKMPP 125 WS P PS TP T T P KPTP PP Sbjct: 4374 WSCPSTPSPTPTPSKSTPTPSKPSSTPSKPTPGTKPP 4410
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)| Length = 268 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Frame = -1 Query: 217 PVLPSTPRSMTTTMYPPRLRL-GKPTPIKMPPP 122 P P TPRS T +PPR L P+P P P Sbjct: 139 PPSPPTPRSSTPIPHPPRRSLPSPPSPSPSPSP 171
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = -1 Query: 271 KRSRESAEGLGRLHCWSLPVLPSTPRSMTTTMYPPRLRLGKPTPIKMPPP 122 KR +E++ + W PV S+ R + + PP R P+P PPP Sbjct: 533 KRQKETSPRMQMGKRWQSPVTKSSRRRRSPSP-PPARRRRSPSPAPPPPP 581
>HLGA_STAAW (P0A073) Gamma-hemolysin component A precursor (H-gamma-2)| (H-gamma-II) Length = 309 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 140 DQNAPATIEDGFPPRFLTIQERVRGRGE 57 D P I+ GF P F+T RG+G+ Sbjct: 223 DNQLPPLIQSGFNPSFITTLSHERGKGD 250
>HLGA_STAAU (P0A074) Gamma-hemolysin component A precursor (H-gamma-2)| (H-gamma-II) Length = 309 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 140 DQNAPATIEDGFPPRFLTIQERVRGRGE 57 D P I+ GF P F+T RG+G+ Sbjct: 223 DNQLPPLIQSGFNPSFITTLSHERGKGD 250
>HLGA_STAAS (Q6G6Q2) Gamma-hemolysin component A precursor (H-gamma-2)| (H-gamma-II) Length = 309 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 140 DQNAPATIEDGFPPRFLTIQERVRGRGE 57 D P I+ GF P F+T RG+G+ Sbjct: 223 DNQLPPLIQSGFNPSFITTLSHERGKGD 250
>HLGA_STAAN (P0A072) Gamma-hemolysin component A precursor (H-gamma-2)| (H-gamma-II) Length = 309 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 140 DQNAPATIEDGFPPRFLTIQERVRGRGE 57 D P I+ GF P F+T RG+G+ Sbjct: 223 DNQLPPLIQSGFNPSFITTLSHERGKGD 250
>HLGA_STAAM (P0A071) Gamma-hemolysin component A precursor (H-gamma-2)| (H-gamma-II) Length = 309 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 140 DQNAPATIEDGFPPRFLTIQERVRGRGE 57 D P I+ GF P F+T RG+G+ Sbjct: 223 DNQLPPLIQSGFNPSFITTLSHERGKGD 250
>HLGA_STAAC (Q5HDD6) Gamma-hemolysin component A precursor (H-gamma-2)| (H-gamma-II) Length = 309 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 140 DQNAPATIEDGFPPRFLTIQERVRGRGE 57 D P I+ GF P F+T RG+G+ Sbjct: 223 DNQLPPLIQSGFNPSFITTLSHERGKGD 250
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = -1 Query: 223 SLPVLPSTPRSMTTTMYPPRLRLGKPTPIKMPPPRS 116 S P +PSTPR + PP +P P +PP S Sbjct: 277 SKPPVPSTPRPGAGSQAPPPPPPSRPGPPPLPPTSS 312
>CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)| (CAIN) Length = 2182 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -1 Query: 259 ESAEGLGRLHCWSLPVLPSTPRSMTTTMYPPRLRLGKPTPIKMPPPRS 116 ES+ RL LP +P TT +PP + + PTP + P S Sbjct: 2082 ESSRAKSRL----LPNMPKLVIPSATTKFPPEITVTPPTPTLLSPKGS 2125
>LIN26_CAEEL (Q27355) Transcription factor lin-26 (Abnormal cell lineage protein| 26) Length = 438 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = -1 Query: 223 SLPVLPSTPRSMTTTMYPPRLRLGKPTPIKMPPP 122 S P PST S PPR + PT I P P Sbjct: 50 SSPESPSTTASTAAQHTPPRTAVSTPTSINTPVP 83
>PHF20_HUMAN (Q9BVI0) PHD finger protein 20 (Hepatocellular carcinoma-associated| antigen 58) (Glioma-expressed antigen 2) (Transcription factor TZP) (Novel zinc finger protein) Length = 1012 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -1 Query: 286 PDYCEKRSRESAEGLGRLHCWSLPVLPSTPRSMTTTMYPPRLRLGKPTPIKMPPPRS 116 P +C+ + S EG R H ++PV + + + + KP P+ +P PRS Sbjct: 775 PLWCQPWKQHSGEG--RSHFRNIPVTDTRSKEEAPSYRTLNGAVEKPRPLALPLPRS 829
>ZGPAT_MOUSE (Q8VDM1) Zinc finger CCCH-type with G patch domain protein| Length = 511 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -1 Query: 202 TPRSMTTTMYPPRLRLGKPTPIKMPPPRSRTDFLRGSL 89 T R + PP+ R P PPPR+ DFL L Sbjct: 365 TKRGQAGSNRPPKCRRSGSRPEGRPPPRNVFDFLNEKL 402
>SIN3B_HUMAN (O75182) Paired amphipathic helix protein Sin3b (Transcriptional| corepressor Sin3b) (Histone deacetylase complex subunit Sin3b) Length = 1162 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/25 (52%), Positives = 15/25 (60%) Frame = -3 Query: 173 PSSSPPWETNADQNAPATIEDGFPP 99 P SSPP E A +APAT + PP Sbjct: 737 PHSSPPEEKGAFGDAPATEQPPLPP 761
>SGS3_DROER (P13730) Salivary glue protein Sgs-3 precursor| Length = 328 Score = 27.3 bits (59), Expect = 9.1 Identities = 19/52 (36%), Positives = 22/52 (42%) Frame = -1 Query: 277 CEKRSRESAEGLGRLHCWSLPVLPSTPRSMTTTMYPPRLRLGKPTPIKMPPP 122 C KR+ R C PV +T R TTT PP PT + PPP Sbjct: 28 CPKRTTPKPCTTARPTC--APVTTTTCRPPTTTRCPP------PTTTRCPPP 71
>BCLF1_HUMAN (Q9NYF8) Bcl-2-associated transcription factor 1 (Btf)| Length = 920 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 Query: 182 HHVPSSSPPWETNADQNAP 126 HH+PS P +T A QNAP Sbjct: 293 HHIPSRRSPAKTIAPQNAP 311 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,462,450 Number of Sequences: 219361 Number of extensions: 732077 Number of successful extensions: 2655 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2399 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2649 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
