ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet80a01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 105 bits (53), Expect = 7e-20 Identities = 116/137 (84%) Strand = Plus / Plus Query: 104 caggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgcgcc 163 ||||| |||||| ||||||||||||| ||||||||||||||||| ||| | |||||| Sbjct: 63252 caggccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgcc 63311 Query: 164 atcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtcgttgccggac 223 ||||||||||||||||||| ||||||| ||||||||||| |||| | | || ||| Sbjct: 63312 gtcgagctcggcatcccgaccacgatccatggcctcggcggcgccgccaccgtccctgac 63371 Query: 224 ctgatggccgcgctgtc 240 ||||||||||||||||| Sbjct: 63372 ctgatggccgcgctgtc 63388 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 99 aggcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggt 158 |||||||||| ||||| ||||||||||||| ||||||||| |||||||| ||| ||| Sbjct: 131496 aggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccggt 131437 Query: 159 gcgccatcgagctcggcatcccgacggcgatccagcgcctcggcggca 206 ||||| || ||||||||||||| || | ||||| ||||||||||||| Sbjct: 131436 gcgccgtcaagctcggcatccccacagtcatccaccgcctcggcggca 131389 Score = 81.8 bits (41), Expect = 1e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| || ||| ||||||||||||| ||||||||| |||| || |||| | ||| Sbjct: 118945 gcgcaggccgatctgtggcgccacagcctctactacctcacctccacgggactccgctgc 119004 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtc 213 |||||| |||| |||||||| || || ||||| |||||||||||| ||||||| Sbjct: 119005 gccatcaagctgggcatccccaccgccatccaccgcctcggcggcgccgcgtc 119057
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 105 bits (53), Expect = 7e-20 Identities = 116/137 (84%) Strand = Plus / Minus Query: 104 caggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgcgcc 163 ||||| |||||| ||||||||||||| ||||||||||||||||| ||| | |||||| Sbjct: 11550536 caggccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgcc 11550477 Query: 164 atcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtcgttgccggac 223 ||||||||||||||||||| ||||||| ||||||||||| |||| | | || ||| Sbjct: 11550476 gtcgagctcggcatcccgaccacgatccatggcctcggcggcgccgccaccgtccctgac 11550417 Query: 224 ctgatggccgcgctgtc 240 ||||||||||||||||| Sbjct: 11550416 ctgatggccgcgctgtc 11550400 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 99 aggcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggt 158 |||||||||| ||||| ||||||||||||| ||||||||| |||||||| ||| ||| Sbjct: 11482292 aggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccggt 11482351 Query: 159 gcgccatcgagctcggcatcccgacggcgatccagcgcctcggcggca 206 ||||| || ||||||||||||| || | ||||| ||||||||||||| Sbjct: 11482352 gcgccgtcaagctcggcatccccacagtcatccaccgcctcggcggca 11482399 Score = 81.8 bits (41), Expect = 1e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| || ||| ||||||||||||| ||||||||| |||| || |||| | ||| Sbjct: 11494843 gcgcaggccgatctgtggcgccacagcctctactacctcacctccacgggactccgctgc 11494784 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtc 213 |||||| |||| |||||||| || || ||||| |||||||||||| ||||||| Sbjct: 11494783 gccatcaagctgggcatccccaccgccatccaccgcctcggcggcgccgcgtc 11494731 Score = 71.9 bits (36), Expect = 1e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 118 gcgccacagcctcacctacctcacgtccatggcactcaggtgcgccatcgagctcggcat 177 |||||||| |||| |||||||||| |||||| | ||| |||||||| || | |||||||| Sbjct: 11303018 gcgccacaccctctcctacctcacctccatgactctccggtgcgccgtccacctcggcat 11302959 Query: 178 cccgacggcgatccagcgcctcggcggcaccgcgtcgttgccggacct 225 ||| || || ||||| |||| ||||||| |||| ||| |||| ||||| Sbjct: 11302958 ccccaccgccatccaccgccacggcggcgccgcctcgctgcccgacct 11302911 Score = 71.9 bits (36), Expect = 1e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 118 gcgccacagcctcacctacctcacgtccatggcactcaggtgcgccatcgagctcggcat 177 |||||||||| || ||||||||||| ||||||| ||| | |||||| | |||||||||| Sbjct: 7138972 gcgccacagcttctcctacctcacggccatggcgctccgctgcgccgccaagctcggcat 7138913 Query: 178 cccgacggcgatccagcgcctcggcggc 205 ||| || || ||||| |||||||||||| Sbjct: 7138912 ccccaccgccatccaccgcctcggcggc 7138885 Score = 58.0 bits (29), Expect = 1e-05 Identities = 101/125 (80%) Strand = Plus / Minus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| ||| || ||||||||||||| || | ||||||||||||| | |||| Sbjct: 11355291 gcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccatggcgtttcagtgc 11355232 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtcgttgccg 220 ||| || ||||||||||||| || || ||||| ||| |||||||||||| ||| |||| Sbjct: 11355231 gccgtcaagctcggcatccccaccgccatccaccgcgccggcggcaccgcctcgctgccc 11355172 Query: 221 gacct 225 ||||| Sbjct: 11355171 gacct 11355167 Score = 58.0 bits (29), Expect = 1e-05 Identities = 101/125 (80%) Strand = Plus / Minus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| |||||| ||||||||||||| || | ||||||||||||| || |||| Sbjct: 11331643 gcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccatggcgttccagtgc 11331584 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtcgttgccg 220 ||| || ||||||||||||| || || ||||| ||| || |||||||| ||| |||| Sbjct: 11331583 gccgtcaagctcggcatccccaccgccatccaccgcgctggtggcaccgcctcgctgccc 11331524 Query: 221 gacct 225 ||||| Sbjct: 11331523 gacct 11331519 Score = 48.1 bits (24), Expect = 0.014 Identities = 59/68 (86%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 144 ccatggcactcaggtgcgccatcgagctcggcat-cccgacggcgatccagcgcctcggc 202 ||||||| |||| ||||||| | ||||||||||| |||||| |||||||| |||| |||| Sbjct: 19031097 ccatggcgctcaagtgcgccgtggagctcggcatccccgac-gcgatccaccgccgcggc 19031039 Query: 203 ggcaccgc 210 ||| |||| Sbjct: 19031038 ggcgccgc 19031031
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 105 bits (53), Expect = 7e-20 Identities = 116/137 (84%) Strand = Plus / Minus Query: 104 caggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgcgcc 163 ||||| |||||| ||||||||||||| ||||||||||||||||| ||| | |||||| Sbjct: 11629725 caggccgacctgtggcgccacagcctctactacctcacgtccatgggcctccgctgcgcc 11629666 Query: 164 atcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtcgttgccggac 223 ||||||||||||||||||| ||||||| ||||||||||| |||| | | || ||| Sbjct: 11629665 gtcgagctcggcatcccgaccacgatccatggcctcggcggcgccgccaccgtccctgac 11629606 Query: 224 ctgatggccgcgctgtc 240 ||||||||||||||||| Sbjct: 11629605 ctgatggccgcgctgtc 11629589 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 99 aggcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggt 158 |||||||||| ||||| ||||||||||||| ||||||||| |||||||| ||| ||| Sbjct: 11561481 aggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccggt 11561540 Query: 159 gcgccatcgagctcggcatcccgacggcgatccagcgcctcggcggca 206 ||||| || ||||||||||||| || | ||||| ||||||||||||| Sbjct: 11561541 gcgccgtcaagctcggcatccccacagtcatccaccgcctcggcggca 11561588 Score = 81.8 bits (41), Expect = 1e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| || ||| ||||||||||||| ||||||||| |||| || |||| | ||| Sbjct: 11574032 gcgcaggccgatctgtggcgccacagcctctactacctcacctccacgggactccgctgc 11573973 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtc 213 |||||| |||| |||||||| || || ||||| |||||||||||| ||||||| Sbjct: 11573972 gccatcaagctgggcatccccaccgccatccaccgcctcggcggcgccgcgtc 11573920 Score = 71.9 bits (36), Expect = 1e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 118 gcgccacagcctcacctacctcacgtccatggcactcaggtgcgccatcgagctcggcat 177 |||||||| |||| |||||||||| |||||| | ||| |||||||| || | |||||||| Sbjct: 11382207 gcgccacaccctctcctacctcacctccatgactctccggtgcgccgtccacctcggcat 11382148 Query: 178 cccgacggcgatccagcgcctcggcggcaccgcgtcgttgccggacct 225 ||| || || ||||| |||| ||||||| |||| ||| |||| ||||| Sbjct: 11382147 ccccaccgccatccaccgccacggcggcgccgcctcgctgcccgacct 11382100 Score = 71.9 bits (36), Expect = 1e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 118 gcgccacagcctcacctacctcacgtccatggcactcaggtgcgccatcgagctcggcat 177 |||||||||| || ||||||||||| ||||||| ||| | |||||| | |||||||||| Sbjct: 7204943 gcgccacagcttctcctacctcacggccatggcgctccgctgcgccgccaagctcggcat 7204884 Query: 178 cccgacggcgatccagcgcctcggcggc 205 ||| || || ||||| |||||||||||| Sbjct: 7204883 ccccaccgccatccaccgcctcggcggc 7204856 Score = 58.0 bits (29), Expect = 1e-05 Identities = 101/125 (80%) Strand = Plus / Minus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| ||| || ||||||||||||| || | ||||||||||||| | |||| Sbjct: 11434480 gcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccatggcgtttcagtgc 11434421 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtcgttgccg 220 ||| || ||||||||||||| || || ||||| ||| |||||||||||| ||| |||| Sbjct: 11434420 gccgtcaagctcggcatccccaccgccatccaccgcgccggcggcaccgcctcgctgccc 11434361 Query: 221 gacct 225 ||||| Sbjct: 11434360 gacct 11434356 Score = 58.0 bits (29), Expect = 1e-05 Identities = 101/125 (80%) Strand = Plus / Minus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| |||||| ||||||||||||| || | ||||||||||||| || |||| Sbjct: 11410832 gcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccatggcgttccagtgc 11410773 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtcgttgccg 220 ||| || ||||||||||||| || || ||||| ||| || |||||||| ||| |||| Sbjct: 11410772 gccgtcaagctcggcatccccaccgccatccaccgcgctggtggcaccgcctcgctgccc 11410713 Query: 221 gacct 225 ||||| Sbjct: 11410712 gacct 11410708 Score = 48.1 bits (24), Expect = 0.014 Identities = 59/68 (86%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 144 ccatggcactcaggtgcgccatcgagctcggcat-cccgacggcgatccagcgcctcggc 202 ||||||| |||| ||||||| | ||||||||||| |||||| |||||||| |||| |||| Sbjct: 19189746 ccatggcgctcaagtgcgccgtggagctcggcatccccgac-gcgatccaccgccgcggc 19189688 Query: 203 ggcaccgc 210 ||| |||| Sbjct: 19189687 ggcgccgc 19189680
>gb|AC135793.4| Oryza sativa chromosome 11 BAC clone OSJNBb0017P15, complete sequence Length = 128418 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Minus Query: 99 aggcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggt 158 |||||||||| ||||| ||||||||||||| ||||||||| |||||||| ||| ||| Sbjct: 17245 aggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccggt 17186 Query: 159 gcgccatcgagctcggcatcccgacggcgatccagcgcctcggcggca 206 ||||| || ||||||||||||| || | ||||| ||||||||||||| Sbjct: 17185 gcgccgtcaagctcggcatccccacagtcatccaccgcctcggcggca 17138 Score = 81.8 bits (41), Expect = 1e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| || ||| ||||||||||||| ||||||||| |||| || |||| | ||| Sbjct: 4694 gcgcaggccgatctgtggcgccacagcctctactacctcacctccacgggactccgctgc 4753 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtc 213 |||||| |||| |||||||| || || ||||| |||||||||||| ||||||| Sbjct: 4754 gccatcaagctgggcatccccaccgccatccaccgcctcggcggcgccgcgtc 4806
>dbj|AK109384.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-A06, full insert sequence Length = 1300 Score = 87.7 bits (44), Expect = 2e-14 Identities = 92/108 (85%) Strand = Plus / Plus Query: 99 aggcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggt 158 |||||||||| ||||| ||||||||||||| ||||||||| |||||||| ||| ||| Sbjct: 119 aggcgcaggccaacctgtggcgccacagcctctactacctcacctccatggcgctccggt 178 Query: 159 gcgccatcgagctcggcatcccgacggcgatccagcgcctcggcggca 206 ||||| || ||||||||||||| || | ||||| ||||||||||||| Sbjct: 179 gcgccgtcaagctcggcatccccacagtcatccaccgcctcggcggca 226
>dbj|AK106179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C11, full insert sequence Length = 1362 Score = 81.8 bits (41), Expect = 1e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| || ||| ||||||||||||| ||||||||| |||| || |||| | ||| Sbjct: 105 gcgcaggccgatctgtggcgccacagcctctactacctcacctccacgggactccgctgc 164 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtc 213 |||||| |||| |||||||| || || ||||| |||||||||||| ||||||| Sbjct: 165 gccatcaagctgggcatccccaccgccatccaccgcctcggcggcgccgcgtc 217
>dbj|AK059770.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H05, full insert sequence Length = 1264 Score = 81.8 bits (41), Expect = 1e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| || ||| ||||||||||||| ||||||||| |||| || |||| | ||| Sbjct: 110 gcgcaggccgatctgtggcgccacagcctctactacctcacctccacgggactccgctgc 169 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtc 213 |||||| |||| |||||||| || || ||||| |||||||||||| ||||||| Sbjct: 170 gccatcaagctgggcatccccaccgccatccaccgcctcggcggcgccgcgtc 222
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds Length = 1373 Score = 73.8 bits (37), Expect = 2e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 104 caggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgcgcc 163 ||||| |||||| |||||||| ||| ||||||||||||||||| ||| | |||||| Sbjct: 90 caggccgacctgtggcgccacaccctttactacctcacgtccatggggctccgctgcgcc 149 Query: 164 atcgagctcggcatcccgacggcgatcca 192 || ||||||||||||||||||||||||| Sbjct: 150 gtcaagctcggcatcccgacggcgatcca 178
>gb|AC135258.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0097K08 map C827S, complete sequence Length = 137870 Score = 71.9 bits (36), Expect = 1e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 118 gcgccacagcctcacctacctcacgtccatggcactcaggtgcgccatcgagctcggcat 177 |||||||||| || ||||||||||| ||||||| ||| | |||||| | |||||||||| Sbjct: 43583 gcgccacagcttctcctacctcacggccatggcgctccgctgcgccgccaagctcggcat 43642 Query: 178 cccgacggcgatccagcgcctcggcggc 205 ||| || || ||||| |||||||||||| Sbjct: 43643 ccccaccgccatccaccgcctcggcggc 43670
>gb|AC147811.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0026P08 map near C827S, complete sequence Length = 148676 Score = 71.9 bits (36), Expect = 1e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 118 gcgccacagcctcacctacctcacgtccatggcactcaggtgcgccatcgagctcggcat 177 |||||||||| || ||||||||||| ||||||| ||| | |||||| | |||||||||| Sbjct: 52192 gcgccacagcttctcctacctcacggccatggcgctccgctgcgccgccaagctcggcat 52133 Query: 178 cccgacggcgatccagcgcctcggcggc 205 ||| || || ||||| |||||||||||| Sbjct: 52132 ccccaccgccatccaccgcctcggcggc 52105
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 71.9 bits (36), Expect = 1e-09 Identities = 90/108 (83%) Strand = Plus / Minus Query: 118 gcgccacagcctcacctacctcacgtccatggcactcaggtgcgccatcgagctcggcat 177 |||||||| |||| |||||||||| |||||| | ||| |||||||| || | |||||||| Sbjct: 89376 gcgccacaccctctcctacctcacctccatgactctccggtgcgccgtccacctcggcat 89317 Query: 178 cccgacggcgatccagcgcctcggcggcaccgcgtcgttgccggacct 225 ||| || || ||||| |||| ||||||| |||| ||| |||| ||||| Sbjct: 89316 ccccaccgccatccaccgccacggcggcgccgcctcgctgcccgacct 89269 Score = 58.0 bits (29), Expect = 1e-05 Identities = 101/125 (80%) Strand = Plus / Minus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| ||| || ||||||||||||| || | ||||||||||||| | |||| Sbjct: 141649 gcgcaggccgacatgttgcgccacagcctctacttcgtcacgtccatggcgtttcagtgc 141590 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtcgttgccg 220 ||| || ||||||||||||| || || ||||| ||| |||||||||||| ||| |||| Sbjct: 141589 gccgtcaagctcggcatccccaccgccatccaccgcgccggcggcaccgcctcgctgccc 141530 Query: 221 gacct 225 ||||| Sbjct: 141529 gacct 141525 Score = 58.0 bits (29), Expect = 1e-05 Identities = 101/125 (80%) Strand = Plus / Minus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| |||||| ||||||||||||| || | ||||||||||||| || |||| Sbjct: 118001 gcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccatggcgttccagtgc 117942 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtcgttgccg 220 ||| || ||||||||||||| || || ||||| ||| || |||||||| ||| |||| Sbjct: 117941 gccgtcaagctcggcatccccaccgccatccaccgcgctggtggcaccgcctcgctgccc 117882 Query: 221 gacct 225 ||||| Sbjct: 117881 gacct 117877
>gb|AY107519.1| Zea mays PCO078033 mRNA sequence Length = 1299 Score = 63.9 bits (32), Expect = 2e-07 Identities = 95/116 (81%) Strand = Plus / Plus Query: 77 cccaccgacgcccagctgatcaaggcgcaggctgacctgcagcgccacagcctcacctac 136 ||||| |||||| ||||| | |||||||||| |||||| ||||||||||||| |||| Sbjct: 63 cccacggacgccgagctgctgcaggcgcaggccgacctgtggcgccacagcctctactac 122 Query: 137 ctcacgtccatggcactcaggtgcgccatcgagctcggcatcccgacggcgatcca 192 || || |||||||| |||| |||||| | |||||| ||||||||| || ||||| Sbjct: 123 ctgacatccatggcgctcaagtgcgcggtggagctccacatcccgaccgccatcca 178
>gb|AY103669.1| Zea mays PCO073521 mRNA sequence Length = 1503 Score = 61.9 bits (31), Expect = 9e-07 Identities = 58/67 (86%) Strand = Plus / Plus Query: 124 cagcctcacctacctcacgtccatggcactcaggtgcgccatcgagctcggcatcccgac 183 ||||||| ||||||||||| || || |||| ||||||||| | ||||| |||||||| || Sbjct: 101 cagcctctcctacctcacgcccctgtcactgaggtgcgccgtggagcttggcatccctac 160 Query: 184 ggcgatc 190 ||||||| Sbjct: 161 ggcgatc 167
>gb|AF033496.1|AF033496 Zea mays herbicide safener binding protein (SBP1) mRNA, complete cds Length = 1438 Score = 61.9 bits (31), Expect = 9e-07 Identities = 58/67 (86%) Strand = Plus / Plus Query: 124 cagcctcacctacctcacgtccatggcactcaggtgcgccatcgagctcggcatcccgac 183 ||||||| ||||||||||| || || |||| ||||||||| | ||||| |||||||| || Sbjct: 99 cagcctctcctacctcacgcccctgtcactgaggtgcgccgtggagcttggcatccctac 158 Query: 184 ggcgatc 190 ||||||| Sbjct: 159 ggcgatc 165
>dbj|AK061247.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence Length = 1262 Score = 58.0 bits (29), Expect = 1e-05 Identities = 101/125 (80%) Strand = Plus / Plus Query: 101 gcgcaggctgacctgcagcgccacagcctcacctacctcacgtccatggcactcaggtgc 160 |||||||| |||||| ||||||||||||| || | ||||||||||||| || |||| Sbjct: 104 gcgcaggccgacctgtggcgccacagcctctacttcgtcacgtccatggcgttccagtgc 163 Query: 161 gccatcgagctcggcatcccgacggcgatccagcgcctcggcggcaccgcgtcgttgccg 220 ||| || ||||||||||||| || || ||||| ||| || |||||||| ||| |||| Sbjct: 164 gccgtcaagctcggcatccccaccgccatccaccgcgctggtggcaccgcctcgctgccc 223 Query: 221 gacct 225 ||||| Sbjct: 224 gacct 228
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 2e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 132 cctacctcacgtccatggcactcaggtgcgccatcgagctcggcatcccgacggcgatcc 191 ||||| ||| ||||||||| |||| ||||||| ||||||||||||||| | || |||| Sbjct: 9845422 cctacatcaagtccatggcgctcaagtgcgccgccgagctcggcatccccgccgccatcc 9845363 Query: 192 agcgcctcggcggcaccgc 210 | |||| ||||||| |||| Sbjct: 9845362 accgccgcggcggcgccgc 9845344
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 54.0 bits (27), Expect = 2e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 132 cctacctcacgtccatggcactcaggtgcgccatcgagctcggcatcccgacggcgatcc 191 ||||| ||| ||||||||| |||| ||||||| ||||||||||||||| | || |||| Sbjct: 135664 cctacatcaagtccatggcgctcaagtgcgccgccgagctcggcatccccgccgccatcc 135605 Query: 192 agcgcctcggcggcaccgc 210 | |||| ||||||| |||| Sbjct: 135604 accgccgcggcggcgccgc 135586
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 54.0 bits (27), Expect = 2e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 132 cctacctcacgtccatggcactcaggtgcgccatcgagctcggcatcccgacggcgatcc 191 ||||| ||| ||||||||| |||| ||||||| ||||||||||||||| | || |||| Sbjct: 42057 cctacatcaagtccatggcgctcaagtgcgccgccgagctcggcatccccgccgccatcc 41998 Query: 192 agcgcctcggcggcaccgc 210 | |||| ||||||| |||| Sbjct: 41997 accgccgcggcggcgccgc 41979
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 48.1 bits (24), Expect = 0.014 Identities = 59/68 (86%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 144 ccatggcactcaggtgcgccatcgagctcggcat-cccgacggcgatccagcgcctcggc 202 ||||||| |||| ||||||| | ||||||||||| |||||| |||||||| |||| |||| Sbjct: 134295 ccatggcgctcaagtgcgccgtggagctcggcatccccgac-gcgatccaccgccgcggc 134237 Query: 203 ggcaccgc 210 ||| |||| Sbjct: 134236 ggcgccgc 134229
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 48.1 bits (24), Expect = 0.014 Identities = 59/68 (86%), Gaps = 2/68 (2%) Strand = Plus / Minus Query: 144 ccatggcactcaggtgcgccatcgagctcggcat-cccgacggcgatccagcgcctcggc 202 ||||||| |||| ||||||| | ||||||||||| |||||| |||||||| |||| |||| Sbjct: 33915 ccatggcgctcaagtgcgccgtggagctcggcatccccgac-gcgatccaccgccgcggc 33857 Query: 203 ggcaccgc 210 ||| |||| Sbjct: 33856 ggcgccgc 33849
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 46.1 bits (23), Expect = 0.056 Identities = 26/27 (96%) Strand = Plus / Plus Query: 212 tcgttgccggacctgatggccgcgctg 238 ||||||||||| ||||||||||||||| Sbjct: 597974 tcgttgccggagctgatggccgcgctg 598000
>emb|CR724291.2|CNS0GLT5 Tetraodon nigroviridis full-length cDNA Length = 1334 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 107 gctgacctgcagcgccacagcc 128 |||||||||||||||||||||| Sbjct: 208 gctgacctgcagcgccacagcc 229
>emb|CR656399.2|CNS0F5G5 Tetraodon nigroviridis full-length cDNA Length = 1172 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 107 gctgacctgcagcgccacagcc 128 |||||||||||||||||||||| Sbjct: 146 gctgacctgcagcgccacagcc 167
>emb|CR644378.2|CNS0EW68 Tetraodon nigroviridis full-length cDNA Length = 1289 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 107 gctgacctgcagcgccacagcc 128 |||||||||||||||||||||| Sbjct: 167 gctgacctgcagcgccacagcc 188
>emb|CR639323.2|CNS0ES9T Tetraodon nigroviridis full-length cDNA Length = 1243 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Plus Query: 107 gctgacctgcagcgccacagcc 128 |||||||||||||||||||||| Sbjct: 153 gctgacctgcagcgccacagcc 174
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.22 Identities = 34/38 (89%) Strand = Plus / Minus Query: 143 tccatggcactcaggtgcgccatcgagctcggcatccc 180 ||||| ||||||||||||||| | ||||| |||||||| Sbjct: 22272618 tccatagcactcaggtgcgccgtagagcttggcatccc 22272581
>dbj|AP004662.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0048G02 Length = 155542 Score = 44.1 bits (22), Expect = 0.22 Identities = 34/38 (89%) Strand = Plus / Minus Query: 143 tccatggcactcaggtgcgccatcgagctcggcatccc 180 ||||| ||||||||||||||| | ||||| |||||||| Sbjct: 88994 tccatagcactcaggtgcgccgtagagcttggcatccc 88957
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 gctgatcaaggcgcaggctga 111 ||||||||||||||||||||| Sbjct: 2393887 gctgatcaaggcgcaggctga 2393907
>gb|AC144408.3| Mus musculus BAC clone RP24-326P8 from chromosome 16, complete sequence Length = 167601 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 acagcctcacctacctcacgt 143 ||||||||||||||||||||| Sbjct: 90179 acagcctcacctacctcacgt 90159
>gb|AC164165.2| Mus musculus BAC clone RP23-145F16 from chromosome 16, complete sequence Length = 214546 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 acagcctcacctacctcacgt 143 ||||||||||||||||||||| Sbjct: 84724 acagcctcacctacctcacgt 84704
>emb|AL627259.8| Mouse DNA sequence from clone RP23-399H3 on chromosome 4, complete sequence Length = 176063 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 atggcagctcagtcccaaaca 67 ||||||||||||||||||||| Sbjct: 152691 atggcagctcagtcccaaaca 152711
>gb|AC124107.8| Mus musculus chromosome 5, clone RP24-317M4, complete sequence Length = 194641 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tggcagctcagtcccaaaca 67 |||||||||||||||||||| Sbjct: 65612 tggcagctcagtcccaaaca 65593
>emb|AL050322.13|HSJ727I10 Human DNA sequence from clone RP4-727I10 on chromosome 20 Contains a novel gene, ESTs, STSs and GSSs, complete sequence Length = 114152 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 caagagagtgatagagaaatcatg 49 |||||||||||||||| ||||||| Sbjct: 37916 caagagagtgatagagcaatcatg 37939
>gb|AC158912.3| Mus musculus chromosome 5, clone RP23-131C17, complete sequence Length = 182161 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 tggcagctcagtcccaaaca 67 |||||||||||||||||||| Sbjct: 116650 tggcagctcagtcccaaaca 116631
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cccgacggcgatccagcgcc 197 |||||||||||||||||||| Sbjct: 3636862 cccgacggcgatccagcgcc 3636843
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgagctcggcatcccgacgg 185 |||||||||||||||||||| Sbjct: 1401910 cgagctcggcatcccgacgg 1401891 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 cgagctcggcatcccgacgg 185 |||||||||||||||||||| Sbjct: 914655 cgagctcggcatcccgacgg 914636
>emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 in linkage group 7, complete sequence Length = 79440 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 caggctgacctgcagcgcca 123 |||||||||||||||||||| Sbjct: 65923 caggctgacctgcagcgcca 65904
>gb|AE012445.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 353 of 460 of the complete genome Length = 11728 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 ccggacctgatggccgcgct 237 |||||||||||||||||||| Sbjct: 4738 ccggacctgatggccgcgct 4719
>ref|NM_137780.2| Drosophila melanogaster CG9304-RA (CG9304), mRNA Length = 2600 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggctgacctgcagcgccaca 125 |||||||||||||||||||| Sbjct: 1551 ggctgacctgcagcgccaca 1532
>gb|L49337.2|RHMMOTB Sinorhizobium meliloti FlgC (flgC) gene, partial cds; FliE (fliE), FlgG (flgG), FlgA (flgA), FlgI (flgI), FlgH (flgH), FliL (fliL), FliP (fliP), FlaA (flaA), FlaB (flaB), FlaC (flaC), FlaD (flaD), MotB (motB), MotC (motC), MotD (motD), and transcriptional regulator genes, complete cds; and unknown genes Length = 19824 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 cgagctcggcatcccgacgg 185 |||||||||||||||||||| Sbjct: 9507 cgagctcggcatcccgacgg 9526
>gb|AY069543.1| Drosophila melanogaster LD26991 full length cDNA Length = 2578 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggctgacctgcagcgccaca 125 |||||||||||||||||||| Sbjct: 1511 ggctgacctgcagcgccaca 1492
>gb|AC099034.1| Drosophila melanogaster, chromosome 2R, region 58B-58C, BAC clone BACR30O14, complete sequence Length = 186432 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggctgacctgcagcgccaca 125 |||||||||||||||||||| Sbjct: 64220 ggctgacctgcagcgccaca 64201
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ccggacctgatggccgcgct 237 |||||||||||||||||||| Sbjct: 1062938 ccggacctgatggccgcgct 1062957
>emb|BX832989.1|CNS09Z5G Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL28ZD12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1182 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 ctgagcatcaagagagtgat 37 |||||||||||||||||||| Sbjct: 1045 ctgagcatcaagagagtgat 1064
>gb|U76384.1|TAU76384 Triticum aestivum o-methyltransferase mRNA, complete cds Length = 1458 Score = 40.1 bits (20), Expect = 3.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 142 gtccatggcactcaggtgcgccatcgagctcggcat 177 ||||||||| |||| |||||||| ||||||||||| Sbjct: 144 gtccatggcgctcaaatgcgccatagagctcggcat 179
>gb|AE003455.3| Drosophila melanogaster chromosome 2R, section 63 of 73 of the complete sequence Length = 291250 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 ggctgacctgcagcgccaca 125 |||||||||||||||||||| Sbjct: 268188 ggctgacctgcagcgccaca 268169
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ctgatggccgcgctgtcgct 243 |||||||||||||||||||| Sbjct: 2843511 ctgatggccgcgctgtcgct 2843530
>gb|AC004368.1|AC004368 Drosophila melanogaster DNA sequence (P1 DS05295 (D64)), complete sequence Length = 89885 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ggctgacctgcagcgccaca 125 |||||||||||||||||||| Sbjct: 67087 ggctgacctgcagcgccaca 67106 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,772,132 Number of Sequences: 3902068 Number of extensions: 1772132 Number of successful extensions: 37051 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36561 Number of HSP's gapped (non-prelim): 484 length of query: 266 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 244 effective length of database: 17,147,199,772 effective search space: 4183916744368 effective search space used: 4183916744368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
