>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 258

 Score = 90.1 bits (222), Expect = 1e-18
 Identities = 47/60 (78%), Positives = 47/60 (78%)
 Frame = +1

Query: 46  MASTSCFLHQSTXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRAALSLLAG 225
           MASTSCFLHQST            VGRTQLFVCKA KNDEAASDAAVVTSRRAALSLLAG
Sbjct: 1   MASTSCFLHQSTARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAG 60

>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein) (OEC23)
          Length = 263

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +1

Query: 46  MASTSCFLHQSTXXXXXXXXXXXXVGRT----QLFVCKAHKNDEAASDAAVVTSRRAALS 213
           MASTSCFLH                       QL VC+A K   A  +   V SRR AL+
Sbjct: 1   MASTSCFLHHHALTAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLALT 60

Query: 214 LLAG 225
           +L G
Sbjct: 61  VLIG 64

>PSBP_PEA (P16059) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 259

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +1

Query: 46  MASTSCFLHQS---TXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRAALSL 216
           MAST CFLH     T              +    VCKA K D+       V SRR ALS+
Sbjct: 1   MASTQCFLHHQYAITTPTRTLSQRQVVTTKPNHIVCKAQKQDDVVD---AVVSRRLALSV 57

Query: 217 LAG 225
           L G
Sbjct: 58  LIG 60

>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 258

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 49  ASTSCFLHQ-STXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRAALSLLAG 225
           AST CFLHQ                 +    +C+A K D+ AS+AAV  SRR AL+LL G
Sbjct: 3   ASTQCFLHQYHALRSSPARTSSVSSPKPNQLICRAQKQDD-ASNAAV--SRRLALTLLIG 59

>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 268

 Score = 35.4 bits (80), Expect = 0.040
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
 Frame = +1

Query: 46  MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASD--AAVVTSR 198
           MAST CFLHQ                +  +        VC+A K      D   +VV SR
Sbjct: 1   MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSR 60

Query: 199 RAALSLLAG 225
           R AL++L G
Sbjct: 61  RLALTVLIG 69

>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 260

 Score = 35.0 bits (79), Expect = 0.052
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 49  ASTSCFLHQSTXXXXXXXXXXXXVG-RTQLFVCKAHKNDEAASDAAVVTSRRAALSLLAG 225
           AST CFLHQ                 +    +C+A K D+A + +  V SRR AL+LL G
Sbjct: 3   ASTQCFLHQYHALRSSPARTSSVPSPKPNQLICRAQKQDDANNTSNAV-SRRLALTLLIG 61

>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 267

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
 Frame = +1

Query: 46  MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASDAAVV---TS 195
           MAST+CFLH                 R Q         VCKA K D+  ++A V+    S
Sbjct: 1   MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDD--NEANVLNSGVS 58

Query: 196 RRAALSLLAG 225
           RR AL++L G
Sbjct: 59  RRLALTVLIG 68

>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 265

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
 Frame = +1

Query: 46  MASTSCFLHQSTXXXXXXXXXXXXV----GRTQLFVCKAHKNDEAASD--AAVVTSRRAA 207
           MAST CFLH               +       QL VC+A K      D   +V  SRR A
Sbjct: 1   MASTQCFLHHHALSTPARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRLA 60

Query: 208 LSLLAG 225
           L++L G
Sbjct: 61  LTVLIG 66

>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane)
          Length = 266

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
 Frame = +1

Query: 46  MASTSCFLHQSTXXXXXXXXXXXXV----GRTQLFVCKAHKNDEAASD---AAVVTSRRA 204
           MAST CFLH               +       QL VC+A     A       +V  SRR 
Sbjct: 1   MASTQCFLHHHALSTPARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRRL 60

Query: 205 ALSLLAG 225
           AL+LL G
Sbjct: 61  ALTLLIG 67

>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast|
           precursor (OEE2) (23 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 23 kDa subunit) (23 kDa
           thylakoid membrane protein)
          Length = 263

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +1

Query: 46  MASTSCFLHQSTXXXXXXXXXXXXVGRTQL-------FVCKAHKNDEAASDAAVVTSRRA 204
           MA ++CFLHQS               +  +        +CKA ++ E  + A    SRR 
Sbjct: 1   MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQSHEDDNSA---VSRRL 57

Query: 205 ALSLLAG 225
           AL+LL G
Sbjct: 58  ALTLLVG 64

>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 260

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +1

Query: 46  MASTSCFLHQSTXXXXXXXXXXXXVGRTQL----FVCKAHKNDEAASDAAVVTSRRAALS 213
           MA ++CFLHQS               +  +     VCKA +  E  +      SRR AL+
Sbjct: 1   MAYSACFLHQSALASSTARSSPSSSSQRYVSISKLVCKAQQTHEEDNS---TVSRRLALT 57

Query: 214 LLAG 225
           LL G
Sbjct: 58  LLVG 61

>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor|
           (OEE2) (23 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid
           membrane protein)
          Length = 264

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +1

Query: 46  MASTSCFLHQ------STXXXXXXXXXXXXVGRTQLFVCKAHKNDEAASDAAVVTSRRAA 207
           MAS++CFL        +T            +  +QL +C+A K+ +   +++   SRR A
Sbjct: 1   MASSACFLLHHAPSTPATTSRTPSHRLVPTIKPSQL-ICRAQKSSDTDENSSTAVSRRLA 59

Query: 208 LSLLAG 225
           L++L G
Sbjct: 60  LTILIG 65

>TERT_HUMAN (O14746) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit) (HEST2) (Telomerase-associated
           protein 2) (TP2)
          Length = 1132

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
 Frame = -2

Query: 166 PRHSCAPCRRTAGCARR-----REQGAPR---QPGARWTGGGSRRWTPL 44
           P H+  P RR  GC R      RE G P     PGAR  GG + R  PL
Sbjct: 187 PPHASGP-RRRLGCERAWNHSVREAGVPLGLPAPGARRRGGSASRSLPL 234

>B3GN3_HUMAN (Q9Y2A9) UDP-GlcNAc:betaGal|
           beta-1,3-N-acetylglucosaminyltransferase 3 (EC 2.4.1.-)
           (Beta3Gn-T3) (BGnT-3) (Core 1 extending
           beta-1,3-N-acetylglucosaminyltransferase)
           (Core1-beta3GlcNAcT) (Beta-1,3-galactosyltransferase 8)
           (Beta-1,3-GalTase 8)
          Length = 372

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
 Frame = +3

Query: 69  PPVHRAPGCLGAPCSRRRA---HPAVRLQGAQE*RGCI*RCCRHQPARRAVPPRRC 227
           PP   AP    APC    +   HP    Q        + R CRH P  + VPP +C
Sbjct: 52  PPTRPAP----APCHANTSMVTHPDFATQPQHVQNFLLYRHCRHFPLLQDVPPSKC 103

>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response|
           factor 2) (ERF-2)
          Length = 492

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 113 PPSGAPSCSSAXXXXXXXXXXXXXSSPAGAPRCPSS 220
           PP    S SS              S+P+GAP C +S
Sbjct: 289 PPPSCSSASSCSSSASSCSSASAASTPSGAPTCCAS 324

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 106 GAPRQPGARWTGGGSRR 56
           GAPR PG R  GGG+RR
Sbjct: 525 GAPRGPGGRPPGGGNRR 541

>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
            (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1745

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 66   PPPVHRA-PGCLGAPCSRRRAHPAVRLQG 149
            PP  H + PGCLGAP S   AH  +R +G
Sbjct: 963  PPTSHASQPGCLGAP-SAEAAHVGLRGEG 990


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,740,806
Number of Sequences: 219361
Number of extensions: 468206
Number of successful extensions: 1594
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)