>emb|X57407.1|TAPPSBP Wheat PsbP mRNA for 23 kDa oxygen evolving protein of photosystem
           II
          Length = 967

 Score =  353 bits (178), Expect = 2e-94
 Identities = 193/198 (97%)
 Strand = Plus / Plus

                                                                       
Query: 30  taaacagcagcgagcaatggcgtccacctcctgcttcctccaccagtccaccgcgcgcct 89
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3   taaacagcagcgagcaatggcgtccacctcctgcttcctccaccagtccaccgcgcgcct 62

                                                                       
Query: 90  ggctgcctcggcgcgccctgctcccgccgtcgggcgcacccagctgttcgtctgcaaggc 149
           ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 63  ggccgcctcggcgcgccctgcgcccgccgtcgggcgcacccagcttttcgtctgcaaggc 122

                                                                       
Query: 150 gcacaagaatgacgaggctgcatctgacgctgctgtcgtcaccagccggcgcgccgcgct 209
           ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 123 gcagaagaatgacgaggctgcatctgacgctgccgtcgtcaccagccggcgcgccgcgct 182

                             
Query: 210 gtccctcctcgccggtgc 227
           ||||||||||||||||||
Sbjct: 183 gtccctcctcgccggtgc 200

>ref|NM_186247.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1114

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 43  gcaatggcgtccacctcctgcttcctccaccagtccac 80
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gcaatggcgtccacctcctgcttcctccaccagtccac 144

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                     
Query: 43      gcaatggcgtccacctcctgcttcctccaccagtccac 80
               ||||||||||||||||||||||||||||||||||||||
Sbjct: 2170384 gcaatggcgtccacctcctgcttcctccaccagtccac 2170347



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 198      gcgcgccgcgctgtccctcc 217
                ||||||||||||||||||||
Sbjct: 16265108 gcgcgccgcgctgtccctcc 16265089

>dbj|AP004010.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1351_C05
          Length = 112465

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 38/38 (100%)
 Strand = Plus / Minus

                                                   
Query: 43    gcaatggcgtccacctcctgcttcctccaccagtccac 80
             ||||||||||||||||||||||||||||||||||||||
Sbjct: 38286 gcaatggcgtccacctcctgcttcctccaccagtccac 38249

>dbj|AK104722.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B02, full
           insert sequence
          Length = 1078

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 43  gcaatggcgtccacctcctgcttcctccaccagtccac 80
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 63  gcaatggcgtccacctcctgcttcctccaccagtccac 100

>dbj|AK065248.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J02, full
           insert sequence
          Length = 1114

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 43  gcaatggcgtccacctcctgcttcctccaccagtccac 80
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 107 gcaatggcgtccacctcctgcttcctccaccagtccac 144

>gb|AF052203.1|AF052203 Oryza sativa 23 kDa polypeptide of photosystem II mRNA, complete
           cds
          Length = 1107

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 43  gcaatggcgtccacctcctgcttcctccaccagtccac 80
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 82  gcaatggcgtccacctcctgcttcctccaccagtccac 119

>gb|AF022732.1|AF022732 Oryza sativa 23kDa polypeptide of photosystem II mRNA, complete cds
          Length = 1031

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 43  gcaatggcgtccacctcctgcttcctccaccagtccac 80
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gcaatggcgtccacctcctgcttcctccaccagtccac 102

>dbj|D49713.1|RICOSEE2 Rice OSOEE2 gene for 23 kDa polypeptide of photosystem II,
          complete cds
          Length = 1008

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 43 gcaatggcgtccacctcctgcttcctccaccagtccac 80
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 27 gcaatggcgtccacctcctgcttcctccaccagtccac 64

>gb|AY103732.1| Zea mays PCO073407 mRNA sequence
          Length = 1083

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 42/47 (89%), Gaps = 3/47 (6%)
 Strand = Plus / Plus

                                                          
Query: 46  atggcgtccacctcctgct---tcctccaccagtccaccgcgcgcct 89
           |||||||||||||||||||   ||||||||||||| ||||| |||||
Sbjct: 70  atggcgtccacctcctgctgcctcctccaccagtcaaccgcccgcct 116

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 14       cctagctaagctaagctaaac 34
                |||||||||||||||||||||
Sbjct: 11322553 cctagctaagctaagctaaac 11322573

>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNAb0085H08, from chromosome 3, complete sequence
          Length = 130656

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     cctagctaagctaagctaaac 34
              |||||||||||||||||||||
Sbjct: 101506 cctagctaagctaagctaaac 101526

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 14       cctagctaagctaagctaaac 34
                |||||||||||||||||||||
Sbjct: 11319316 cctagctaagctaagctaaac 11319336

>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005J15, complete sequence
          Length = 159270

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    cctagctaagctaagctaaac 34
             |||||||||||||||||||||
Sbjct: 30850 cctagctaagctaagctaaac 30870

>gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome 8, complete sequence
          Length = 188068

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 52    tccacctcctgcttcctccac 72
             |||||||||||||||||||||
Sbjct: 81388 tccacctcctgcttcctccac 81408

>ref|XM_477999.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 gcgcgccgcgctgtccctcc 217
           ||||||||||||||||||||
Sbjct: 150 gcgcgccgcgctgtccctcc 169

>ref|XM_959280.1| Neurospora crassa OR74A hypothetical protein (NCU00830.1) partial
           mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  cctgcttcctccaccagtcc 78
           ||||||||||||||||||||
Sbjct: 110 cctgcttcctccaccagtcc 129

>ref|XM_325009.1| Neurospora crassa OR74A hypothetical protein (NCU00830.1) partial
           mRNA
          Length = 765

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  cctgcttcctccaccagtcc 78
           ||||||||||||||||||||
Sbjct: 110 cctgcttcctccaccagtcc 129

>ref|XM_867925.1| PREDICTED: Bos taurus similar to Carbohydrate sulfotransferase 2
           (N-acetylglucosamine 6-O-sulfotransferase 1)
           (GlcNAc6ST-1) (Gn6st-1)
           (Galactose/N-acetylglucosamine/N-acetylglucosamine
           6-O-sulfotransferase 2) (GST-2) (LOC615978), mRNA
          Length = 1723

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 100 gcgcgccctgctcccgccgt 119
           ||||||||||||||||||||
Sbjct: 78  gcgcgccctgctcccgccgt 97

>emb|AL023693.25|HS32B1 Human DNA sequence from clone RP1-32B1 on chromosome 6q22.33-23.3
              Contains the MYB gene for v-myb myeloblastosis viral
              oncogene homolog (avian), 2 novel genes, the 3' end of a
              novel protein and a CpG island, complete sequence
          Length = 188287

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     cctcctgcttcctccaccag 75
              ||||||||||||||||||||
Sbjct: 167015 cctcctgcttcctccaccag 166996

>gb|AC067751.7| Homo sapiens chromosome 10 clone RP11-357K14, complete sequence
          Length = 180882

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tccacctcctgcttcctcca 71
              ||||||||||||||||||||
Sbjct: 171104 tccacctcctgcttcctcca 171085

>dbj|AK171278.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630324L02
           product:deafness, autosomal dominant 5 homolog (human),
           full insert sequence
          Length = 2133

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 435 cgtccacctcctgcttcctc 416

>dbj|AK155135.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630203F04
           product:Nonsyndromic hearing impairment protein 5
           homolog [Mus musculus], full insert sequence
          Length = 4382

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 415 cgtccacctcctgcttcctc 396

>dbj|AK016561.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932441K13 product:deafness, autosomal
           dominant 5 homolog (human), full insert sequence
          Length = 2500

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 804 cgtccacctcctgcttcctc 785

>dbj|AK089459.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730034N01
           product:deafness, autosomal dominant 5 homolog (human),
           full insert sequence
          Length = 2934

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 423 cgtccacctcctgcttcctc 404

>gb|AC092645.2| Homo sapiens BAC clone RP11-399B17 from 2, complete sequence
          Length = 147390

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tagctaagctaagctaaaca 35
              ||||||||||||||||||||
Sbjct: 123039 tagctaagctaagctaaaca 123020

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 189     caccagccggcgcgccgcgc 208
               ||||||||||||||||||||
Sbjct: 4594971 caccagccggcgcgccgcgc 4594952

>dbj|AP003916.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_H04
          Length = 151699

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   gcgcgccgcgctgtccctcc 217
             ||||||||||||||||||||
Sbjct: 85546 gcgcgccgcgctgtccctcc 85527

>gb|AC008160.11|AC008160 Mus musculus, clone 187_J_17, complete sequence
          Length = 206383

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     cgtccacctcctgcttcctc 69
              ||||||||||||||||||||
Sbjct: 199985 cgtccacctcctgcttcctc 199966

>gb|AF073309.1|AF073309 Mus musculus nonsyndromic hearing impairment protein (DFNA5) mRNA,
           complete cds
          Length = 2141

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 437 cgtccacctcctgcttcctc 418

>gb|BC086618.1| Mus musculus cDNA clone IMAGE:5716858, containing frame-shift
           errors
          Length = 2216

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 496 cgtccacctcctgcttcctc 477

>gb|BC051962.1| Mus musculus cDNA clone IMAGE:5716858, containing frame-shift
           errors
          Length = 2216

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 496 cgtccacctcctgcttcctc 477

>ref|NM_018769.1| Mus musculus deafness, autosomal dominant 5 homolog (human)
           (Dfna5h), mRNA
          Length = 2141

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  cgtccacctcctgcttcctc 69
           ||||||||||||||||||||
Sbjct: 437 cgtccacctcctgcttcctc 418

>gb|AC153819.5| Mus musculus 6 BAC RP23-445H14 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 199780

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    cgtccacctcctgcttcctc 69
             ||||||||||||||||||||
Sbjct: 44052 cgtccacctcctgcttcctc 44033

>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 73      cagtccaccgcgcgcctggc 92
               ||||||||||||||||||||
Sbjct: 2465864 cagtccaccgcgcgcctggc 2465883


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,705,494
Number of Sequences: 3902068
Number of extensions: 1705494
Number of successful extensions: 126001
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124872
Number of HSP's gapped (non-prelim): 1128
length of query: 227
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 205
effective length of database: 17,147,199,772
effective search space: 3515175953260
effective search space used: 3515175953260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)