| Clone Name | baet79g02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.42 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ttcaatgctgaatgaaaacta 120 ||||||||||||||||||||| Sbjct: 9349060 ttcaatgctgaatgaaaacta 9349040
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.42 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ttcaatgctgaatgaaaacta 120 ||||||||||||||||||||| Sbjct: 9348945 ttcaatgctgaatgaaaacta 9348925
>emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa0026C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 190718 Score = 42.1 bits (21), Expect = 0.42 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 ttcaatgctgaatgaaaacta 120 ||||||||||||||||||||| Sbjct: 89995 ttcaatgctgaatgaaaacta 90015
>gb|AC130312.3| Homo sapiens chromosome 11, clone RP11-97G1, complete sequence Length = 161367 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 aatgctgaatgaaaactatggttt 126 ||||||||||||||| |||||||| Sbjct: 121657 aatgctgaatgaaaagtatggttt 121634
>gb|AC107971.8| Homo sapiens chromosome 11, clone CTD-2307F18, complete sequence Length = 119883 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 aatgctgaatgaaaactatggttt 126 ||||||||||||||| |||||||| Sbjct: 97683 aatgctgaatgaaaagtatggttt 97706
>emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chromosome X, complete sequence Length = 197632 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 atgagttctcttgctgccag 65 |||||||||||||||||||| Sbjct: 172819 atgagttctcttgctgccag 172800
>ref|XM_637561.1| Dictyostelium discoideum hypothetical protein (DDB0203389), partial mRNA Length = 2574 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 gaaaactatggttttacca 131 ||||||||||||||||||| Sbjct: 351 gaaaactatggttttacca 333
>gb|AC137613.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0034K10, complete sequence Length = 138925 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 atgaaaactatggttttac 129 ||||||||||||||||||| Sbjct: 5735 atgaaaactatggttttac 5717
>gb|AC147174.2| Xenopus tropicalis clone CH216-51H8, complete sequence Length = 191184 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 tgctgccaggagtggaagt 75 ||||||||||||||||||| Sbjct: 85515 tgctgccaggagtggaagt 85497
>gb|AC148454.2| Xenopus tropicalis clone CH216-161F9, complete sequence Length = 186914 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 tgctgccaggagtggaagt 75 ||||||||||||||||||| Sbjct: 83251 tgctgccaggagtggaagt 83233
>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone OSJNBb0069G11, complete sequence Length = 174844 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 atgaaaactatggttttac 129 ||||||||||||||||||| Sbjct: 150929 atgaaaactatggttttac 150911
>gb|AC147206.2| Xenopus tropicalis clone CH216-39C21, complete sequence Length = 167795 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 tgctgccaggagtggaagt 75 ||||||||||||||||||| Sbjct: 124103 tgctgccaggagtggaagt 124085
>gb|AC147170.3| Xenopus tropicalis clone CH216-154J22, complete sequence Length = 163973 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 tgctgccaggagtggaagt 75 ||||||||||||||||||| Sbjct: 126434 tgctgccaggagtggaagt 126416
>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence Length = 183648 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 gaaaactatggttttacca 131 ||||||||||||||||||| Sbjct: 157935 gaaaactatggttttacca 157953
>gb|AC092129.3| Homo sapiens chromosome 16 clone RP11-140O8, complete sequence Length = 190333 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 26 atgcaaatatgcagcagct 44 ||||||||||||||||||| Sbjct: 96520 atgcaaatatgcagcagct 96502
>gb|AC123923.2| Mus musculus BAC clone RP24-228I17 from chromosome 1, complete sequence Length = 163182 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 aagtcatgcaaatatgcag 39 ||||||||||||||||||| Sbjct: 161602 aagtcatgcaaatatgcag 161620
>gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome 17, complete sequence Length = 206003 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 atcgagcagcaagtcatgc 29 ||||||||||||||||||| Sbjct: 95974 atcgagcagcaagtcatgc 95992
>emb|AL163284.2|HS21C084 Homo sapiens chromosome 21 segment HS21C084 Length = 340000 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 agcagcaagtcatgcaaat 33 ||||||||||||||||||| Sbjct: 190975 agcagcaagtcatgcaaat 190993
>gb|AC118207.13| Mus musculus chromosome 8, clone RP24-215A12, complete sequence Length = 187453 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 atgaacaatattgagccta 97 ||||||||||||||||||| Sbjct: 36920 atgaacaatattgagccta 36902
>gb|AC090337.5| Homo sapiens chromosome 18, clone RP11-674P19, complete sequence Length = 183876 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 104 atgctgaatgaaaactatg 122 ||||||||||||||||||| Sbjct: 104416 atgctgaatgaaaactatg 104398
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 atgaaaactatggttttac 129 ||||||||||||||||||| Sbjct: 10534113 atgaaaactatggttttac 10534095
>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence Length = 152439 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 aattcaatgctgaatgaaa 116 ||||||||||||||||||| Sbjct: 149989 aattcaatgctgaatgaaa 150007 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 98 aattcaatgctgaatgaaa 116 ||||||||||||||||||| Sbjct: 127141 aattcaatgctgaatgaaa 127159
>dbj|BS000160.1| Pan troglodytes chromosome 22 clone:PTB-043M13, map 22, complete sequences Length = 141932 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 agcagcaagtcatgcaaat 33 ||||||||||||||||||| Sbjct: 94971 agcagcaagtcatgcaaat 94989
>emb|BX004756.7| Zebrafish DNA sequence from clone CH211-59A4 in linkage group 1, complete sequence Length = 169530 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 101 tcaatgctgaatgaaaact 119 ||||||||||||||||||| Sbjct: 94129 tcaatgctgaatgaaaact 94147
>emb|AL663026.13| Mouse DNA sequence from clone RP23-224M19 on chromosome X, complete sequence Length = 237481 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 40 cagctgatgagttctcttg 58 ||||||||||||||||||| Sbjct: 60383 cagctgatgagttctcttg 60365
>emb|BX321890.5| Zebrafish DNA sequence from clone CH211-258D5 in linkage group 5, complete sequence Length = 147231 Score = 38.2 bits (19), Expect = 6.5 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 96 taaattcaatgctgaatgaaaactatg 122 ||||||||||||||||| ||||||||| Sbjct: 56350 taaattcaatgctgaat-aaaactatg 56325
>emb|CR925820.5| Zebrafish DNA sequence from clone CH211-22E9 in linkage group 10, complete sequence Length = 173023 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 aaatatgcagcagctgatg 48 ||||||||||||||||||| Sbjct: 75996 aaatatgcagcagctgatg 75978
>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence Length = 180436 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 aaatatgcagcagctgatg 48 ||||||||||||||||||| Sbjct: 18672 aaatatgcagcagctgatg 18690
>emb|AL773573.1|HS146B4 Homo sapiens chromosome 21 from PAC RP1-146B4 map 21q22.2,D21S349-MX1, complete sequence Length = 107830 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 agcagcaagtcatgcaaat 33 ||||||||||||||||||| Sbjct: 24390 agcagcaagtcatgcaaat 24408
>gb|AC131697.4| Mus musculus BAC clone RP23-407K12 from 1, complete sequence Length = 199589 Score = 38.2 bits (19), Expect = 6.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 aagtcatgcaaatatgcag 39 ||||||||||||||||||| Sbjct: 39917 aagtcatgcaaatatgcag 39935 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,431,779 Number of Sequences: 3902068 Number of extensions: 1431779 Number of successful extensions: 99967 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 99593 Number of HSP's gapped (non-prelim): 375 length of query: 137 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 116 effective length of database: 17,151,101,840 effective search space: 1989527813440 effective search space used: 1989527813440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)