ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet79g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.42
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.42
3emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa... 42 0.42
4gb|AC130312.3| Homo sapiens chromosome 11, clone RP11-97G1, comp... 40 1.6
5gb|AC107971.8| Homo sapiens chromosome 11, clone CTD-2307F18, co... 40 1.6
6emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chr... 40 1.6
7ref|XM_637561.1| Dictyostelium discoideum hypothetical protein (... 38 6.5
8gb|AC137613.2| Oryza sativa (japonica cultivar-group) chromosome... 38 6.5
9gb|AC147174.2| Xenopus tropicalis clone CH216-51H8, complete seq... 38 6.5
10gb|AC148454.2| Xenopus tropicalis clone CH216-161F9, complete se... 38 6.5
11gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome... 38 6.5
12gb|AC147206.2| Xenopus tropicalis clone CH216-39C21, complete se... 38 6.5
13gb|AC147170.3| Xenopus tropicalis clone CH216-154J22, complete s... 38 6.5
14gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124... 38 6.5
15gb|AC092129.3| Homo sapiens chromosome 16 clone RP11-140O8, comp... 38 6.5
16gb|AC123923.2| Mus musculus BAC clone RP24-228I17 from chromosom... 38 6.5
17gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome... 38 6.5
18emb|AL163284.2|HS21C084 Homo sapiens chromosome 21 segment HS21C084 38 6.5
19gb|AC118207.13| Mus musculus chromosome 8, clone RP24-215A12, co... 38 6.5
20gb|AC090337.5| Homo sapiens chromosome 18, clone RP11-674P19, co... 38 6.5
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.5
22gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence 38 6.5
23dbj|BS000160.1| Pan troglodytes chromosome 22 clone:PTB-043M13, ... 38 6.5
24emb|BX004756.7| Zebrafish DNA sequence from clone CH211-59A4 in ... 38 6.5
25emb|AL663026.13| Mouse DNA sequence from clone RP23-224M19 on ch... 38 6.5
26emb|BX321890.5| Zebrafish DNA sequence from clone CH211-258D5 in... 38 6.5
27emb|CR925820.5| Zebrafish DNA sequence from clone CH211-22E9 in ... 38 6.5
28emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, ... 38 6.5
29emb|AL773573.1|HS146B4 Homo sapiens chromosome 21 from PAC RP1-1... 38 6.5
30gb|AC131697.4| Mus musculus BAC clone RP23-407K12 from 1, comple... 38 6.5

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 100     ttcaatgctgaatgaaaacta 120
               |||||||||||||||||||||
Sbjct: 9349060 ttcaatgctgaatgaaaacta 9349040



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 100     ttcaatgctgaatgaaaacta 120
               |||||||||||||||||||||
Sbjct: 9348945 ttcaatgctgaatgaaaacta 9348925



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>emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa0026C14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 190718

 Score = 42.1 bits (21), Expect = 0.42
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   ttcaatgctgaatgaaaacta 120
             |||||||||||||||||||||
Sbjct: 89995 ttcaatgctgaatgaaaacta 90015



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>gb|AC130312.3| Homo sapiens chromosome 11, clone RP11-97G1, complete sequence
          Length = 161367

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 103    aatgctgaatgaaaactatggttt 126
              ||||||||||||||| ||||||||
Sbjct: 121657 aatgctgaatgaaaagtatggttt 121634



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>gb|AC107971.8| Homo sapiens chromosome 11, clone CTD-2307F18, complete sequence
          Length = 119883

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   aatgctgaatgaaaactatggttt 126
             ||||||||||||||| ||||||||
Sbjct: 97683 aatgctgaatgaaaagtatggttt 97706



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>emb|AL672039.9| Mouse DNA sequence from clone RP23-295F17 on chromosome X, complete
              sequence
          Length = 197632

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     atgagttctcttgctgccag 65
              ||||||||||||||||||||
Sbjct: 172819 atgagttctcttgctgccag 172800



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>ref|XM_637561.1| Dictyostelium discoideum hypothetical protein (DDB0203389), partial
           mRNA
          Length = 2574

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 113 gaaaactatggttttacca 131
           |||||||||||||||||||
Sbjct: 351 gaaaactatggttttacca 333



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>gb|AC137613.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0034K10, complete sequence
          Length = 138925

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 111  atgaaaactatggttttac 129
            |||||||||||||||||||
Sbjct: 5735 atgaaaactatggttttac 5717



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>gb|AC147174.2| Xenopus tropicalis clone CH216-51H8, complete sequence
          Length = 191184

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    tgctgccaggagtggaagt 75
             |||||||||||||||||||
Sbjct: 85515 tgctgccaggagtggaagt 85497



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>gb|AC148454.2| Xenopus tropicalis clone CH216-161F9, complete sequence
          Length = 186914

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    tgctgccaggagtggaagt 75
             |||||||||||||||||||
Sbjct: 83251 tgctgccaggagtggaagt 83233



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>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone
              OSJNBb0069G11, complete sequence
          Length = 174844

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 111    atgaaaactatggttttac 129
              |||||||||||||||||||
Sbjct: 150929 atgaaaactatggttttac 150911



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>gb|AC147206.2| Xenopus tropicalis clone CH216-39C21, complete sequence
          Length = 167795

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 57     tgctgccaggagtggaagt 75
              |||||||||||||||||||
Sbjct: 124103 tgctgccaggagtggaagt 124085



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>gb|AC147170.3| Xenopus tropicalis clone CH216-154J22, complete sequence
          Length = 163973

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 57     tgctgccaggagtggaagt 75
              |||||||||||||||||||
Sbjct: 126434 tgctgccaggagtggaagt 126416



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>gb|AC117081.2| Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4,
              complete sequence
          Length = 183648

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 113    gaaaactatggttttacca 131
              |||||||||||||||||||
Sbjct: 157935 gaaaactatggttttacca 157953



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>gb|AC092129.3| Homo sapiens chromosome 16 clone RP11-140O8, complete sequence
          Length = 190333

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    atgcaaatatgcagcagct 44
             |||||||||||||||||||
Sbjct: 96520 atgcaaatatgcagcagct 96502



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>gb|AC123923.2| Mus musculus BAC clone RP24-228I17 from chromosome 1, complete sequence
          Length = 163182

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     aagtcatgcaaatatgcag 39
              |||||||||||||||||||
Sbjct: 161602 aagtcatgcaaatatgcag 161620



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>gb|AC122488.3| Mus musculus BAC clone RP24-383B2 from chromosome 17, complete sequence
          Length = 206003

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    atcgagcagcaagtcatgc 29
             |||||||||||||||||||
Sbjct: 95974 atcgagcagcaagtcatgc 95992



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>emb|AL163284.2|HS21C084 Homo sapiens chromosome 21 segment HS21C084
          Length = 340000

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     agcagcaagtcatgcaaat 33
              |||||||||||||||||||
Sbjct: 190975 agcagcaagtcatgcaaat 190993



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>gb|AC118207.13| Mus musculus chromosome 8, clone RP24-215A12, complete sequence
          Length = 187453

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    atgaacaatattgagccta 97
             |||||||||||||||||||
Sbjct: 36920 atgaacaatattgagccta 36902



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>gb|AC090337.5| Homo sapiens chromosome 18, clone RP11-674P19, complete sequence
          Length = 183876

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    atgctgaatgaaaactatg 122
              |||||||||||||||||||
Sbjct: 104416 atgctgaatgaaaactatg 104398



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 111      atgaaaactatggttttac 129
                |||||||||||||||||||
Sbjct: 10534113 atgaaaactatggttttac 10534095



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>gb|AF369906.1| Sorghum bicolor clone BAC10J22 Sbb3766 sequence
          Length = 152439

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 98     aattcaatgctgaatgaaa 116
              |||||||||||||||||||
Sbjct: 149989 aattcaatgctgaatgaaa 150007



 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 98     aattcaatgctgaatgaaa 116
              |||||||||||||||||||
Sbjct: 127141 aattcaatgctgaatgaaa 127159



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>dbj|BS000160.1| Pan troglodytes chromosome 22 clone:PTB-043M13, map 22, complete
             sequences
          Length = 141932

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    agcagcaagtcatgcaaat 33
             |||||||||||||||||||
Sbjct: 94971 agcagcaagtcatgcaaat 94989



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>emb|BX004756.7| Zebrafish DNA sequence from clone CH211-59A4 in linkage group 1,
             complete sequence
          Length = 169530

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 101   tcaatgctgaatgaaaact 119
             |||||||||||||||||||
Sbjct: 94129 tcaatgctgaatgaaaact 94147



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>emb|AL663026.13| Mouse DNA sequence from clone RP23-224M19 on chromosome X, complete
             sequence
          Length = 237481

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    cagctgatgagttctcttg 58
             |||||||||||||||||||
Sbjct: 60383 cagctgatgagttctcttg 60365



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>emb|BX321890.5| Zebrafish DNA sequence from clone CH211-258D5 in linkage group 5,
             complete sequence
          Length = 147231

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                        
Query: 96    taaattcaatgctgaatgaaaactatg 122
             ||||||||||||||||| |||||||||
Sbjct: 56350 taaattcaatgctgaat-aaaactatg 56325



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>emb|CR925820.5| Zebrafish DNA sequence from clone CH211-22E9 in linkage group 10,
             complete sequence
          Length = 173023

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    aaatatgcagcagctgatg 48
             |||||||||||||||||||
Sbjct: 75996 aaatatgcagcagctgatg 75978



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>emb|AL953903.8| Zebrafish DNA sequence from clone CH211-249G19, complete sequence
          Length = 180436

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    aaatatgcagcagctgatg 48
             |||||||||||||||||||
Sbjct: 18672 aaatatgcagcagctgatg 18690



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>emb|AL773573.1|HS146B4 Homo sapiens chromosome 21 from PAC RP1-146B4 map 21q22.2,D21S349-MX1,
             complete sequence
          Length = 107830

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    agcagcaagtcatgcaaat 33
             |||||||||||||||||||
Sbjct: 24390 agcagcaagtcatgcaaat 24408



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>gb|AC131697.4| Mus musculus BAC clone RP23-407K12 from 1, complete sequence
          Length = 199589

 Score = 38.2 bits (19), Expect = 6.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    aagtcatgcaaatatgcag 39
             |||||||||||||||||||
Sbjct: 39917 aagtcatgcaaatatgcag 39935


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,431,779
Number of Sequences: 3902068
Number of extensions: 1431779
Number of successful extensions: 99967
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 99593
Number of HSP's gapped (non-prelim): 375
length of query: 137
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 116
effective length of database: 17,151,101,840
effective search space: 1989527813440
effective search space used: 1989527813440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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