| Clone Name | baet79f07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_493832.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2364 Score = 218 bits (110), Expect = 5e-54 Identities = 164/182 (90%) Strand = Plus / Plus Query: 4 tcatccgcctgggcgcggtgctcatcacggggttcatcctggcgaccatcttctggcgcc 63 |||||||||| | |||||||| |||| ||||||||||| || |||||||||||||||| Sbjct: 1505 tcatccgcctcgcggcggtgctggtcaccgggttcatcctcgccaccatcttctggcgcc 1564 Query: 64 ttgacgactcgcccaagggcgtggaggagcgcctgggcttcttcgccatcgccatgtcca 123 | ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 1565 tggacgagtcgcccaagggcgtgcaggagcggctgggcttcttcgccatcgccatgtcca 1624 Query: 124 ccatgttctacacttgctccgacgcgctgcccgtgttcctcaacgagcgctacattttcc 183 |||||| |||||| |||||||||||||| || |||||||||| |||||||||||| |||| Sbjct: 1625 ccatgtactacacctgctccgacgcgctcccggtgttcctcagcgagcgctacatcttcc 1684 Query: 184 tc 185 || Sbjct: 1685 tc 1686
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 218 bits (110), Expect = 5e-54 Identities = 164/182 (90%) Strand = Plus / Plus Query: 4 tcatccgcctgggcgcggtgctcatcacggggttcatcctggcgaccatcttctggcgcc 63 |||||||||| | |||||||| |||| ||||||||||| || |||||||||||||||| Sbjct: 9627864 tcatccgcctcgcggcggtgctggtcaccgggttcatcctcgccaccatcttctggcgcc 9627923 Query: 64 ttgacgactcgcccaagggcgtggaggagcgcctgggcttcttcgccatcgccatgtcca 123 | ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 9627924 tggacgagtcgcccaagggcgtgcaggagcggctgggcttcttcgccatcgccatgtcca 9627983 Query: 124 ccatgttctacacttgctccgacgcgctgcccgtgttcctcaacgagcgctacattttcc 183 |||||| |||||| |||||||||||||| || |||||||||| |||||||||||| |||| Sbjct: 9627984 ccatgtactacacctgctccgacgcgctcccggtgttcctcagcgagcgctacatcttcc 9628043 Query: 184 tc 185 || Sbjct: 9628044 tc 9628045 Score = 105 bits (53), Expect = 5e-20 Identities = 125/149 (83%) Strand = Plus / Plus Query: 30 acggggttcatcctggcgaccatcttctggcgccttgacgactcgcccaagggcgtggag 89 |||| ||||||||| || ||| | |||||||| || ||| || | |||||||||||| | Sbjct: 9638342 acggcgttcatccttgccaccgtgttctggcggctggacaacacacccaagggcgtgaac 9638401 Query: 90 gagcgcctgggcttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcg 149 ||||| | |||||||||||||||||| ||||||||||||||||||| || |||||||| Sbjct: 9638402 gagcggttcggcttcttcgccatcgccgtgtccaccatgttctacaccagcgccgacgcg 9638461 Query: 150 ctgcccgtgttcctcaacgagcgctacat 178 || || ||||||||| ||||||||||| Sbjct: 9638462 ctcccggtgttcctcgtggagcgctacat 9638490
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 218 bits (110), Expect = 5e-54 Identities = 164/182 (90%) Strand = Plus / Plus Query: 4 tcatccgcctgggcgcggtgctcatcacggggttcatcctggcgaccatcttctggcgcc 63 |||||||||| | |||||||| |||| ||||||||||| || |||||||||||||||| Sbjct: 48763 tcatccgcctcgcggcggtgctggtcaccgggttcatcctcgccaccatcttctggcgcc 48822 Query: 64 ttgacgactcgcccaagggcgtggaggagcgcctgggcttcttcgccatcgccatgtcca 123 | ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 48823 tggacgagtcgcccaagggcgtgcaggagcggctgggcttcttcgccatcgccatgtcca 48882 Query: 124 ccatgttctacacttgctccgacgcgctgcccgtgttcctcaacgagcgctacattttcc 183 |||||| |||||| |||||||||||||| || |||||||||| |||||||||||| |||| Sbjct: 48883 ccatgtactacacctgctccgacgcgctcccggtgttcctcagcgagcgctacatcttcc 48942 Query: 184 tc 185 || Sbjct: 48943 tc 48944 Score = 105 bits (53), Expect = 5e-20 Identities = 125/149 (83%) Strand = Plus / Plus Query: 30 acggggttcatcctggcgaccatcttctggcgccttgacgactcgcccaagggcgtggag 89 |||| ||||||||| || ||| | |||||||| || ||| || | |||||||||||| | Sbjct: 59241 acggcgttcatccttgccaccgtgttctggcggctggacaacacacccaagggcgtgaac 59300 Query: 90 gagcgcctgggcttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcg 149 ||||| | |||||||||||||||||| ||||||||||||||||||| || |||||||| Sbjct: 59301 gagcggttcggcttcttcgccatcgccgtgtccaccatgttctacaccagcgccgacgcg 59360 Query: 150 ctgcccgtgttcctcaacgagcgctacat 178 || || ||||||||| ||||||||||| Sbjct: 59361 ctcccggtgttcctcgtggagcgctacat 59389
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 218 bits (110), Expect = 5e-54 Identities = 164/182 (90%) Strand = Plus / Plus Query: 4 tcatccgcctgggcgcggtgctcatcacggggttcatcctggcgaccatcttctggcgcc 63 |||||||||| | |||||||| |||| ||||||||||| || |||||||||||||||| Sbjct: 9625985 tcatccgcctcgcggcggtgctggtcaccgggttcatcctcgccaccatcttctggcgcc 9626044 Query: 64 ttgacgactcgcccaagggcgtggaggagcgcctgggcttcttcgccatcgccatgtcca 123 | ||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 9626045 tggacgagtcgcccaagggcgtgcaggagcggctgggcttcttcgccatcgccatgtcca 9626104 Query: 124 ccatgttctacacttgctccgacgcgctgcccgtgttcctcaacgagcgctacattttcc 183 |||||| |||||| |||||||||||||| || |||||||||| |||||||||||| |||| Sbjct: 9626105 ccatgtactacacctgctccgacgcgctcccggtgttcctcagcgagcgctacatcttcc 9626164 Query: 184 tc 185 || Sbjct: 9626165 tc 9626166 Score = 105 bits (53), Expect = 5e-20 Identities = 125/149 (83%) Strand = Plus / Plus Query: 30 acggggttcatcctggcgaccatcttctggcgccttgacgactcgcccaagggcgtggag 89 |||| ||||||||| || ||| | |||||||| || ||| || | |||||||||||| | Sbjct: 9636463 acggcgttcatccttgccaccgtgttctggcggctggacaacacacccaagggcgtgaac 9636522 Query: 90 gagcgcctgggcttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcg 149 ||||| | |||||||||||||||||| ||||||||||||||||||| || |||||||| Sbjct: 9636523 gagcggttcggcttcttcgccatcgccgtgtccaccatgttctacaccagcgccgacgcg 9636582 Query: 150 ctgcccgtgttcctcaacgagcgctacat 178 || || ||||||||| ||||||||||| Sbjct: 9636583 ctcccggtgttcctcgtggagcgctacat 9636611
>dbj|AK072135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128L10, full insert sequence Length = 2693 Score = 214 bits (108), Expect = 7e-53 Identities = 153/168 (91%) Strand = Plus / Plus Query: 18 gcggtgctcatcacggggttcatcctggcgaccatcttctggcgccttgacgactcgccc 77 |||||||| |||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 1563 gcggtgctggtcaccgggttcatcctcgccaccatcttctggcgcctggacgagtcgccc 1622 Query: 78 aagggcgtggaggagcgcctgggcttcttcgccatcgccatgtccaccatgttctacact 137 ||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct: 1623 aagggcgtgcaggagcggctgggcttcttcgccatcgccatgtccaccatgtactacacc 1682 Query: 138 tgctccgacgcgctgcccgtgttcctcaacgagcgctacattttcctc 185 |||||||||||||| || |||||||||| |||||||||||| |||||| Sbjct: 1683 tgctccgacgcgctcccggtgttcctcagcgagcgctacatcttcctc 1730
>ref|XM_493905.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1965 Score = 145 bits (73), Expect = 5e-32 Identities = 130/149 (87%) Strand = Plus / Plus Query: 30 acggggttcatcctggcgaccatcttctggcgccttgacgactcgcccaagggcgtggag 89 |||||||||||||| || ||||||||||||||||| |||||| |||||||||| || || Sbjct: 1210 acggggttcatcctcgccaccatcttctggcgcctcgacgacacgcccaagggagtccag 1269 Query: 90 gagcgcctgggcttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcg 149 ||||| || |||||||||||||| ||||||||||||||||||||| ||| |||||||| Sbjct: 1270 gagcgtctcggcttcttcgccatggccatgtccaccatgttctacgtctgcgccgacgcg 1329 Query: 150 ctgcccgtgttcctcaacgagcgctacat 178 ||||| |||||| || | |||||| |||| Sbjct: 1330 ctgccggtgttcgtccaggagcgccacat 1358
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 145 bits (73), Expect = 5e-32 Identities = 130/149 (87%) Strand = Plus / Minus Query: 30 acggggttcatcctggcgaccatcttctggcgccttgacgactcgcccaagggcgtggag 89 |||||||||||||| || ||||||||||||||||| |||||| |||||||||| || || Sbjct: 982530 acggggttcatcctcgccaccatcttctggcgcctcgacgacacgcccaagggagtccag 982471 Query: 90 gagcgcctgggcttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcg 149 ||||| || |||||||||||||| ||||||||||||||||||||| ||| |||||||| Sbjct: 982470 gagcgtctcggcttcttcgccatggccatgtccaccatgttctacgtctgcgccgacgcg 982411 Query: 150 ctgcccgtgttcctcaacgagcgctacat 178 ||||| |||||| || | |||||| |||| Sbjct: 982410 ctgccggtgttcgtccaggagcgccacat 982382 Score = 137 bits (69), Expect = 1e-29 Identities = 129/149 (86%) Strand = Plus / Plus Query: 30 acggggttcatcctggcgaccatcttctggcgccttgacgactcgcccaagggcgtggag 89 |||||||||||||| || ||||||||||||||||| |||||| |||||||||| || || Sbjct: 990964 acggggttcatcctcgccaccatcttctggcgcctcgacgacacgcccaagggagtccag 991023 Query: 90 gagcgcctgggcttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcg 149 ||||| || |||||||||||||| || |||||||||||||||||| ||| |||||||| Sbjct: 991024 gagcgtctcggcttcttcgccatggcgatgtccaccatgttctacgtctgcgccgacgcg 991083 Query: 150 ctgcccgtgttcctcaacgagcgctacat 178 ||||| |||||| || | |||||| |||| Sbjct: 991084 ctgccggtgttcgtccaggagcgccacat 991112
>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04 Length = 175439 Score = 145 bits (73), Expect = 5e-32 Identities = 130/149 (87%) Strand = Plus / Minus Query: 30 acggggttcatcctggcgaccatcttctggcgccttgacgactcgcccaagggcgtggag 89 |||||||||||||| || ||||||||||||||||| |||||| |||||||||| || || Sbjct: 72927 acggggttcatcctcgccaccatcttctggcgcctcgacgacacgcccaagggagtccag 72868 Query: 90 gagcgcctgggcttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcg 149 ||||| || |||||||||||||| ||||||||||||||||||||| ||| |||||||| Sbjct: 72867 gagcgtctcggcttcttcgccatggccatgtccaccatgttctacgtctgcgccgacgcg 72808 Query: 150 ctgcccgtgttcctcaacgagcgctacat 178 ||||| |||||| || | |||||| |||| Sbjct: 72807 ctgccggtgttcgtccaggagcgccacat 72779 Score = 137 bits (69), Expect = 1e-29 Identities = 129/149 (86%) Strand = Plus / Plus Query: 30 acggggttcatcctggcgaccatcttctggcgccttgacgactcgcccaagggcgtggag 89 |||||||||||||| || ||||||||||||||||| |||||| |||||||||| || || Sbjct: 81361 acggggttcatcctcgccaccatcttctggcgcctcgacgacacgcccaagggagtccag 81420 Query: 90 gagcgcctgggcttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcg 149 ||||| || |||||||||||||| || |||||||||||||||||| ||| |||||||| Sbjct: 81421 gagcgtctcggcttcttcgccatggcgatgtccaccatgttctacgtctgcgccgacgcg 81480 Query: 150 ctgcccgtgttcctcaacgagcgctacat 178 ||||| |||||| || | |||||| |||| Sbjct: 81481 ctgccggtgttcgtccaggagcgccacat 81509
>ref|XM_493906.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2118 Score = 137 bits (69), Expect = 1e-29 Identities = 129/149 (86%) Strand = Plus / Plus Query: 30 acggggttcatcctggcgaccatcttctggcgccttgacgactcgcccaagggcgtggag 89 |||||||||||||| || ||||||||||||||||| |||||| |||||||||| || || Sbjct: 1267 acggggttcatcctcgccaccatcttctggcgcctcgacgacacgcccaagggagtccag 1326 Query: 90 gagcgcctgggcttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcg 149 ||||| || |||||||||||||| || |||||||||||||||||| ||| |||||||| Sbjct: 1327 gagcgtctcggcttcttcgccatggcgatgtccaccatgttctacgtctgcgccgacgcg 1386 Query: 150 ctgcccgtgttcctcaacgagcgctacat 178 ||||| |||||| || | |||||| |||| Sbjct: 1387 ctgccggtgttcgtccaggagcgccacat 1415
>ref|NM_190489.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2250 Score = 131 bits (66), Expect = 8e-28 Identities = 102/114 (89%) Strand = Plus / Plus Query: 72 tcgcccaagggcgtggaggagcgcctgggcttcttcgccatcgccatgtccaccatgttc 131 ||||||||||||| | ||||||| || |||||||||||| |||||||||||||||||||| Sbjct: 1459 tcgcccaagggcgcgcaggagcggctcggcttcttcgccttcgccatgtccaccatgttc 1518 Query: 132 tacacttgctccgacgcgctgcccgtgttcctcaacgagcgctacattttcctc 185 ||||| ||| |||||||||| || |||||||| ||||||||||||| |||||| Sbjct: 1519 tacacctgcgccgacgcgctcccggtgttcctgcacgagcgctacatcttcctc 1572
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 131 bits (66), Expect = 8e-28 Identities = 102/114 (89%) Strand = Plus / Plus Query: 72 tcgcccaagggcgtggaggagcgcctgggcttcttcgccatcgccatgtccaccatgttc 131 ||||||||||||| | ||||||| || |||||||||||| |||||||||||||||||||| Sbjct: 35856058 tcgcccaagggcgcgcaggagcggctcggcttcttcgccttcgccatgtccaccatgttc 35856117 Query: 132 tacacttgctccgacgcgctgcccgtgttcctcaacgagcgctacattttcctc 185 ||||| ||| |||||||||| || |||||||| ||||||||||||| |||||| Sbjct: 35856118 tacacctgcgccgacgcgctcccggtgttcctgcacgagcgctacatcttcctc 35856171
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 131 bits (66), Expect = 8e-28 Identities = 102/114 (89%) Strand = Plus / Plus Query: 72 tcgcccaagggcgtggaggagcgcctgggcttcttcgccatcgccatgtccaccatgttc 131 ||||||||||||| | ||||||| || |||||||||||| |||||||||||||||||||| Sbjct: 120516 tcgcccaagggcgcgcaggagcggctcggcttcttcgccttcgccatgtccaccatgttc 120575 Query: 132 tacacttgctccgacgcgctgcccgtgttcctcaacgagcgctacattttcctc 185 ||||| ||| |||||||||| || |||||||| ||||||||||||| |||||| Sbjct: 120576 tacacctgcgccgacgcgctcccggtgttcctgcacgagcgctacatcttcctc 120629
>dbj|AK067556.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111O15, full insert sequence Length = 2624 Score = 131 bits (66), Expect = 8e-28 Identities = 102/114 (89%) Strand = Plus / Plus Query: 72 tcgcccaagggcgtggaggagcgcctgggcttcttcgccatcgccatgtccaccatgttc 131 ||||||||||||| | ||||||| || |||||||||||| |||||||||||||||||||| Sbjct: 1535 tcgcccaagggcgcgcaggagcggctcggcttcttcgccttcgccatgtccaccatgttc 1594 Query: 132 tacacttgctccgacgcgctgcccgtgttcctcaacgagcgctacattttcctc 185 ||||| ||| |||||||||| || |||||||| ||||||||||||| |||||| Sbjct: 1595 tacacctgcgccgacgcgctcccggtgttcctgcacgagcgctacatcttcctc 1648
>ref|XM_493834.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2298 Score = 105 bits (53), Expect = 5e-20 Identities = 125/149 (83%) Strand = Plus / Plus Query: 30 acggggttcatcctggcgaccatcttctggcgccttgacgactcgcccaagggcgtggag 89 |||| ||||||||| || ||| | |||||||| || ||| || | |||||||||||| | Sbjct: 1462 acggcgttcatccttgccaccgtgttctggcggctggacaacacacccaagggcgtgaac 1521 Query: 90 gagcgcctgggcttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcg 149 ||||| | |||||||||||||||||| ||||||||||||||||||| || |||||||| Sbjct: 1522 gagcggttcggcttcttcgccatcgccgtgtccaccatgttctacaccagcgccgacgcg 1581 Query: 150 ctgcccgtgttcctcaacgagcgctacat 178 || || ||||||||| ||||||||||| Sbjct: 1582 ctcccggtgttcctcgtggagcgctacat 1610
>ref|XM_476595.1| Oryza sativa (japonica cultivar-group), mRNA Length = 762 Score = 77.8 bits (39), Expect = 1e-11 Identities = 128/157 (81%), Gaps = 8/157 (5%) Strand = Plus / Plus Query: 30 acggggttcatcctggcgaccatcttctggcgcc----ttgacgactcgcccaagggcgt 85 ||||||||||||||||| |||||||||||||||| | |||||| |||||||||| || Sbjct: 391 acggggttcatcctggcaaccatcttctggcgcctcgatcgacgacacgcccaagggagt 450 Query: 86 ggaggagcgcctgggcttc----ttcgccatcgccatgtccaccatgttctacacttgct 141 ||||||| ||||||||| |||||||| || ||||| || | ||||||| ||| Sbjct: 451 ccaggagcggctgggcttcttaattcgccatggcgatgtcgacgacgttctacgtctgcg 510 Query: 142 ccgacgcgctgcccgtgttcctcaacgagcgctacat 178 ||||||||||||| |||||| || | |||||| |||| Sbjct: 511 ccgacgcgctgccggtgttcgtccaggagcgccacat 547
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 77.8 bits (39), Expect = 1e-11 Identities = 128/157 (81%), Gaps = 8/157 (5%) Strand = Plus / Minus Query: 30 acggggttcatcctggcgaccatcttctggcgcc----ttgacgactcgcccaagggcgt 85 ||||||||||||||||| |||||||||||||||| | |||||| |||||||||| || Sbjct: 2097944 acggggttcatcctggcaaccatcttctggcgcctcgatcgacgacacgcccaagggagt 2097885 Query: 86 ggaggagcgcctgggcttc----ttcgccatcgccatgtccaccatgttctacacttgct 141 ||||||| ||||||||| |||||||| || ||||| || | ||||||| ||| Sbjct: 2097884 ccaggagcggctgggcttcttaattcgccatggcgatgtcgacgacgttctacgtctgcg 2097825 Query: 142 ccgacgcgctgcccgtgttcctcaacgagcgctacat 178 ||||||||||||| |||||| || | |||||| |||| Sbjct: 2097824 ccgacgcgctgccggtgttcgtccaggagcgccacat 2097788
>dbj|AP004314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0495H05 Length = 205595 Score = 77.8 bits (39), Expect = 1e-11 Identities = 128/157 (81%), Gaps = 8/157 (5%) Strand = Plus / Minus Query: 30 acggggttcatcctggcgaccatcttctggcgcc----ttgacgactcgcccaagggcgt 85 ||||||||||||||||| |||||||||||||||| | |||||| |||||||||| || Sbjct: 182241 acggggttcatcctggcaaccatcttctggcgcctcgatcgacgacacgcccaagggagt 182182 Query: 86 ggaggagcgcctgggcttc----ttcgccatcgccatgtccaccatgttctacacttgct 141 ||||||| ||||||||| |||||||| || ||||| || | ||||||| ||| Sbjct: 182181 ccaggagcggctgggcttcttaattcgccatggcgatgtcgacgacgttctacgtctgcg 182122 Query: 142 ccgacgcgctgcccgtgttcctcaacgagcgctacat 178 ||||||||||||| |||||| || | |||||| |||| Sbjct: 182121 ccgacgcgctgccggtgttcgtccaggagcgccacat 182085
>dbj|AP003829.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1417_E01 Length = 118058 Score = 77.8 bits (39), Expect = 1e-11 Identities = 128/157 (81%), Gaps = 8/157 (5%) Strand = Plus / Minus Query: 30 acggggttcatcctggcgaccatcttctggcgcc----ttgacgactcgcccaagggcgt 85 ||||||||||||||||| |||||||||||||||| | |||||| |||||||||| || Sbjct: 53737 acggggttcatcctggcaaccatcttctggcgcctcgatcgacgacacgcccaagggagt 53678 Query: 86 ggaggagcgcctgggcttc----ttcgccatcgccatgtccaccatgttctacacttgct 141 ||||||| ||||||||| |||||||| || ||||| || | ||||||| ||| Sbjct: 53677 ccaggagcggctgggcttcttaattcgccatggcgatgtcgacgacgttctacgtctgcg 53618 Query: 142 ccgacgcgctgcccgtgttcctcaacgagcgctacat 178 ||||||||||||| |||||| || | |||||| |||| Sbjct: 53617 ccgacgcgctgccggtgttcgtccaggagcgccacat 53581
>ref|NM_115367.1| Arabidopsis thaliana ATPase, coupled to transmembrane movement of substances AT3G55090 mRNA, complete cds Length = 2163 Score = 54.0 bits (27), Expect = 2e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 102 ttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcgctgcccgtgttc 161 |||||||| |||| ||||| || ||||||||||||||| |||| || || ||||||||| Sbjct: 1402 ttcttcgcattcgcaatgtcaacaatgttctacacttgcgccgatgctcttcccgtgttc 1461 Query: 162 ctc 164 ||| Sbjct: 1462 ctc 1464
>emb|AL132970.2|ATT15C9 Arabidopsis thaliana DNA chromosome 3, BAC clone T15C9 Length = 84601 Score = 54.0 bits (27), Expect = 2e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 102 ttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcgctgcccgtgttc 161 |||||||| |||| ||||| || ||||||||||||||| |||| || || ||||||||| Sbjct: 69972 ttcttcgcattcgcaatgtcaacaatgttctacacttgcgccgatgctcttcccgtgttc 69913 Query: 162 ctc 164 ||| Sbjct: 69912 ctc 69910
>emb|BX819631.1|CNS0A8U6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB9ZD01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1629 Score = 54.0 bits (27), Expect = 2e-04 Identities = 54/63 (85%) Strand = Plus / Minus Query: 102 ttcttcgccatcgccatgtccaccatgttctacacttgctccgacgcgctgcccgtgttc 161 |||||||| |||| ||||| || ||||||||||||||| |||| || || ||||||||| Sbjct: 133 ttcttcgcattcgcaatgtcaacaatgttctacacttgcgccgatgctcttcccgtgttc 74 Query: 162 ctc 164 ||| Sbjct: 73 ctc 71
>ref|NM_129492.2| Arabidopsis thaliana ATPase, coupled to transmembrane movement of substances AT2G39350 mRNA, complete cds Length = 2862 Score = 48.1 bits (24), Expect = 0.009 Identities = 39/44 (88%) Strand = Plus / Plus Query: 102 ttcttcgccatcgccatgtccaccatgttctacacttgctccga 145 ||||||||| |||| ||||| || ||||||||||||||| |||| Sbjct: 1623 ttcttcgccttcgcgatgtcgacaatgttctacacttgcgccga 1666
>gb|AC004697.3| Arabidopsis thaliana chromosome 2 clone T16B24 map CIC10A06, complete sequence Length = 113950 Score = 48.1 bits (24), Expect = 0.009 Identities = 39/44 (88%) Strand = Plus / Plus Query: 102 ttcttcgccatcgccatgtccaccatgttctacacttgctccga 145 ||||||||| |||| ||||| || ||||||||||||||| |||| Sbjct: 7153 ttcttcgccttcgcgatgtcgacaatgttctacacttgcgccga 7196
>dbj|AK117338.1| Arabidopsis thaliana At2g39350 mRNA for putative ABC transporter, complete cds, clone: RAFL16-90-K23 Length = 2473 Score = 48.1 bits (24), Expect = 0.009 Identities = 39/44 (88%) Strand = Plus / Plus Query: 102 ttcttcgccatcgccatgtccaccatgttctacacttgctccga 145 ||||||||| |||| ||||| || ||||||||||||||| |||| Sbjct: 1623 ttcttcgccttcgcgatgtcgacaatgttctacacttgcgccga 1666
>gb|AC090651.3| Homo sapiens chromosome 15 clone RP11-344A16 map 15q21.3, complete sequence Length = 208230 Score = 42.1 bits (21), Expect = 0.58 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 gccttgacgactcgcccaagg 81 ||||||||||||||||||||| Sbjct: 67531 gccttgacgactcgcccaagg 67511
>ref|XM_580988.2| PREDICTED: Bos taurus similar to Neuropeptide Y receptor type 1 (NPY1-R) (LOC504813), mRNA Length = 1152 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ccatcgccatgtccaccatg 128 |||||||||||||||||||| Sbjct: 1046 ccatcgccatgtccaccatg 1065
>gb|BC114695.1| Bos taurus similar to Neuropeptide Y receptor type 1 (NPY1-R), mRNA (cDNA clone MGC:137850 IMAGE:8082019), complete cds Length = 2916 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ccatcgccatgtccaccatg 128 |||||||||||||||||||| Sbjct: 1374 ccatcgccatgtccaccatg 1393
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ctgggcgcggtgctcatcac 31 |||||||||||||||||||| Sbjct: 1968371 ctgggcgcggtgctcatcac 1968352
>dbj|AP004250.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47K21, TM0260, complete sequence Length = 79947 Score = 40.1 bits (20), Expect = 2.3 Identities = 41/48 (85%) Strand = Plus / Plus Query: 117 atgtccaccatgttctacacttgctccgacgcgctgcccgtgttcctc 164 |||||||||| |||||||| | |||||||||| |||||||||||| Sbjct: 59869 atgtccaccaccttctacaccaccgccgacgcgctccccgtgttcctc 59916
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 ggcgtggaggagcgcctgg 99 ||||||||||||||||||| Sbjct: 3078741 ggcgtggaggagcgcctgg 3078759
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 ccgcctgggcgcggtgctc 26 ||||||||||||||||||| Sbjct: 552502 ccgcctgggcgcggtgctc 552484
>ref|XM_473723.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 720 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 155 cgtgttcctcaacgagcgc 173 ||||||||||||||||||| Sbjct: 333 cgtgttcctcaacgagcgc 351
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 actcgcccaagggcgtgga 88 ||||||||||||||||||| Sbjct: 1440491 actcgcccaagggcgtgga 1440473
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 ctgggcttcttcgccatcg 114 ||||||||||||||||||| Sbjct: 1380405 ctgggcttcttcgccatcg 1380387
>ref|XM_367271.1| Magnaporthe grisea 70-15 hypothetical protein (MG07196.4) partial mRNA Length = 945 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 146 cgcgctgcccgtgttcctcaacg 168 ||||||| ||||||||||||||| Sbjct: 273 cgcgctggccgtgttcctcaacg 295
>ref|XM_846345.1| PREDICTED: Canis familiaris similar to nudix (nucleoside diphosphate linked moiety X)-type motif 18 (LOC609139), mRNA Length = 1551 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 366 gctggccgtgttcctcaacgagc 388
>gb|BC098710.1| Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 18, mRNA (cDNA clone IMAGE:7315261), partial cds Length = 1423 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 217 gctggccgtgttcctcaacgagc 239
>gb|BC082050.1| Rattus norvegicus nudix (nucleoside diphosphate linked moiety X)-type motif 18, mRNA (cDNA clone IMAGE:7132056), partial cds Length = 1409 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 148 gctggccgtgttcctcaacgagc 170
>gb|AC122268.5| Mus musculus BAC clone RP23-216B15 from 14, complete sequence Length = 207136 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 202409 gctggccgtgttcctcaacgagc 202431
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 92 gcgcctgggcttcttcgccatcg 114 ||||||||||| ||||||||||| Sbjct: 1276676 gcgcctgggctgcttcgccatcg 1276698
>emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 4/11 Length = 349697 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 gcttcttcgccatcgccat 118 ||||||||||||||||||| Sbjct: 150684 gcttcttcgccatcgccat 150702
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 tgctcatcacggggttcat 40 ||||||||||||||||||| Sbjct: 143114 tgctcatcacggggttcat 143132
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence Length = 179644 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 155 cgtgttcctcaacgagcgc 173 ||||||||||||||||||| Sbjct: 5728 cgtgttcctcaacgagcgc 5710
>gb|BC036081.1| Homo sapiens cDNA clone MGC:33735 IMAGE:5302402, complete cds Length = 2587 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 caagggcgtggaggagcgc 95 ||||||||||||||||||| Sbjct: 525 caagggcgtggaggagcgc 507
>gb|DQ397860.1| Cenarchaeum symbiosum clone C07E09, complete sequence Length = 42614 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 79 agggcgtggaggagcgcctgggc 101 |||||| |||||||||||||||| Sbjct: 25957 agggcgcggaggagcgcctgggc 25935
>dbj|AK137014.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430039M03 product:hypothetical NUDIX hydrolase containing protein, full insert sequence Length = 1525 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 451 gctggccgtgttcctcaacgagc 473
>dbj|AK145997.1| Mus musculus 12 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:I530023E14 product:hypothetical NUDIX hydrolase containing protein, full insert sequence Length = 1412 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 229 gctggccgtgttcctcaacgagc 251
>dbj|AK157937.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched library, clone:F930010H20 product:hypothetical NUDIX hydrolase containing protein, full insert sequence Length = 3717 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 241 gctggccgtgttcctcaacgagc 263
>dbj|AK155086.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630201B16 product:hypothetical NUDIX hydrolase containing protein, full insert sequence Length = 2751 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 241 gctggccgtgttcctcaacgagc 263
>dbj|AK089446.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730031I09 product:hypothetical protein, full insert sequence Length = 3621 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 242 gctggccgtgttcctcaacgagc 264
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 155 cgtgttcctcaacgagcgc 173 ||||||||||||||||||| Sbjct: 29868976 cgtgttcctcaacgagcgc 29868958
>gb|AC154563.2| Mus musculus BAC clone RP23-401E22 from chromosome 14, complete sequence Length = 206798 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 145136 gctggccgtgttcctcaacgagc 145114
>gb|AE004756.1| Pseudomonas aeruginosa PAO1, section 317 of 529 of the complete genome Length = 11039 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 6 atccgcctgggcgcggtgc 24 ||||||||||||||||||| Sbjct: 5106 atccgcctgggcgcggtgc 5124
>ref|XM_341351.2| PREDICTED: Rattus norvegicus similar to cDNA sequence BC036718 (predicted) (RGD1311802_predicted), mRNA Length = 1519 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 279 gctggccgtgttcctcaacgagc 301
>dbj|AK177304.1| Mus musculus cDNA, clone:Y0G0102F03, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000061562, based on BLAT search Length = 87 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 20 gctggccgtgttcctcaacgagc 42
>dbj|AK069139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008F14, full insert sequence Length = 1474 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 155 cgtgttcctcaacgagcgc 173 ||||||||||||||||||| Sbjct: 597 cgtgttcctcaacgagcgc 615
>ref|NM_153136.2| Mus musculus nudix (nucleoside diphosphate linked moiety X)-type motif 18 (Nudt18), mRNA Length = 3717 Score = 38.2 bits (19), Expect = 9.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 149 gctgcccgtgttcctcaacgagc 171 |||| |||||||||||||||||| Sbjct: 241 gctggccgtgttcctcaacgagc 263
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06, complete sequence Length = 178552 Score = 38.2 bits (19), Expect = 9.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 155 cgtgttcctcaacgagcgc 173 ||||||||||||||||||| Sbjct: 149902 cgtgttcctcaacgagcgc 149884 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,056,218 Number of Sequences: 3902068 Number of extensions: 1056218 Number of successful extensions: 71204 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70352 Number of HSP's gapped (non-prelim): 844 length of query: 185 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 163 effective length of database: 17,147,199,772 effective search space: 2794993562836 effective search space used: 2794993562836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)