ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet79f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chlo... 81 6e-16
2CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chlo... 79 3e-15
3CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chlo... 70 1e-12
4CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast... 59 4e-09
5CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloropla... 54 1e-07
6CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloropla... 44 1e-04
7CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloropla... 43 2e-04
8CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29 42 3e-04
9CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloropl... 42 4e-04
10LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins pre... 42 4e-04
11CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloro... 42 4e-04
12CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, ch... 41 7e-04
13CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, ch... 40 0.001
14CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chlorop... 40 0.002
15LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins pre... 36 0.022
16VNUA_PRVKA (P33485) Probable nuclear antigen 34 0.11
17CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chlorop... 32 0.41
18CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII typ... 32 0.53
19CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 membe... 32 0.53
20CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloropl... 32 0.53
21COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemph... 31 0.90
22CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe... 31 0.90
23CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast ... 30 1.2
24CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast... 30 1.2
25CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloropla... 30 1.5
26CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast... 30 1.5
27CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl... 30 1.5
28CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor 30 1.5
29CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloropl... 30 1.5
30CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloropla... 30 1.5
31CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloropl... 30 1.5
32CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor 30 2.0
33CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla... 30 2.0
34CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop... 30 2.0
35CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type... 30 2.0
36CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast... 30 2.0
37CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII typ... 30 2.0
38HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-l... 30 2.0
39CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl... 30 2.0
40CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloropla... 30 2.0
41CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl... 30 2.0
42CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor 29 2.6
43CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chlorop... 29 2.6
44PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regula... 29 3.4
45CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII ty... 28 4.5
46CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type... 28 4.5
47CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl... 28 4.5
48CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast... 28 4.5
49CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl... 28 4.5
50CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl... 28 4.5
51CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla... 28 4.5
52CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl... 28 4.5
53CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla... 28 4.5
54CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl... 28 4.5
55CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla... 28 4.5
56CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast... 28 4.5
57CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla... 28 4.5
58CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl... 28 4.5
59CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl... 28 4.5
60CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl... 28 4.5
61CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast... 28 5.9
62CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast... 28 7.7
63CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla... 28 7.7
64CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe... 28 7.7
65CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla... 28 7.7
66CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ... 28 7.7
67CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla... 28 7.7
68CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII typ... 28 7.7
69CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla... 28 7.7
70CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl... 28 7.7
71CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast... 28 7.7
72CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla... 28 7.7
73CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contain... 27 10.0
74PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regula... 27 10.0
75CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Conta... 27 10.0
76CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop... 27 10.0 
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast|
           precursor (LHCII protein 4.2) (LHCB4.2)
          Length = 287

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
 Frame = +3

Query: 99  TFLGTRL-ADPAPQNGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPGAQAPEYLDGTLV 275
           + +GTR+ +D +  + R  ARFGFG             + DRPLWFPGA++PEYLDG+LV
Sbjct: 12  SIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVIS-DRPLWFPGAKSPEYLDGSLV 70

Query: 276 GDYGFDPFGLG 308
           GDYGFDPFGLG
Sbjct: 71  GDYGFDPFGLG 81
to top
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast|
           precursor (LHCII protein 4.1) (LHCB4.1)
          Length = 290

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 39/72 (54%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
 Frame = +3

Query: 99  TFLGTRLADPA-PQNGRIVARFGFGXXXXX-XXXXXXXXTTDRPLWFPGAQAPEYLDGTL 272
           + +GTR+A    P +GR  A FGFG              TTDRPLW+PGA +P++LDG+L
Sbjct: 13  SIMGTRVAPGIHPGSGRFTAVFGFGKKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSL 72

Query: 273 VGDYGFDPFGLG 308
           VGDYGFDPFGLG
Sbjct: 73  VGDYGFDPFGLG 84
to top
>CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chloroplast|
           precursor (LHCII protein 4.3) (LHCB4.3)
          Length = 276

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 34/72 (47%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
 Frame = +3

Query: 108 GTRLADPAPQNGRIVARFGFGXXXXXXX-----XXXXXXTTDRPLWFPGAQAPEYLDGTL 272
           G R+ DP P  GR+ ARFGF                     DR +WFPGA  PE+LDG++
Sbjct: 14  GIRIQDPRPGTGRVQARFGFSFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSM 73

Query: 273 VGDYGFDPFGLG 308
           +GD GFDPFGLG
Sbjct: 74  IGDRGFDPFGLG 85
to top
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCI type II CAB)
          Length = 270

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 23/31 (74%), Positives = 27/31 (87%)
 Frame = +3

Query: 216 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGLG 308
           DRPLWFPG+  PE+LDG+L GD+GFDP GLG
Sbjct: 64  DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLG 94
to top
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCI type II CAB-7)
          Length = 270

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 21/30 (70%), Positives = 25/30 (83%)
 Frame = +3

Query: 216 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGL 305
           DRPLWFPG+  P +LDG+L GD+GFDP GL
Sbjct: 64  DRPLWFPGSTPPPWLDGSLPGDFGFDPLGL 93
to top
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCI type III CAB-8)
          Length = 273

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +3

Query: 216 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGL 305
           +R LWF   Q+  YLDG L GD+GFDP GL
Sbjct: 52  NRQLWFASKQSLSYLDGRLPGDFGFDPLGL 81
to top
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCI type III CAB-4) (LHCP)
          Length = 251

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +3

Query: 138 NGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPGAQAPEYLDGTLVGDYGFDPFGL 305
           +GR+     F                 +  W PG  +P+YL G+L GD GFDP GL
Sbjct: 27  SGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGL 82
to top
>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29|
          Length = 279

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +3

Query: 225 LWFPGAQAPEYLDGTLVGDYGFDPFGL 305
           LW P    PE+LDG+L GD GFDP GL
Sbjct: 51  LWLPNTTRPEWLDGSLPGDRGFDPLGL 77
to top
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor|
           (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa
           protein)
          Length = 246

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = +3

Query: 228 WFPGAQAPEYLDGTLVGDYGFDPFGLG 308
           W PG   P YLDG+  GD+GFD  GLG
Sbjct: 49  WMPGQPRPSYLDGSAPGDFGFDSLGLG 75
to top
>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor|
           [Contains: LH38 protein 1; LH38 protein 2; LH38 protein
           3] (Fragment)
          Length = 530

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 17/28 (60%), Positives = 19/28 (67%)
 Frame = +3

Query: 222 PLWFPGAQAPEYLDGTLVGDYGFDPFGL 305
           PLWFP   AP +L+G   GD GFDP GL
Sbjct: 3   PLWFPNTLAPSWLNGEYYGDRGFDPAGL 30



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +3

Query: 216 DRPLWFPGAQAPEYLDGTLVGDYGFDPFGL 305
           +R LWFP    P YL G   GD GFDP GL
Sbjct: 370 ERELWFPNIVPPRYLTGEAYGDKGFDPAGL 399



 Score = 33.9 bits (76), Expect = 0.11
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 225 LWFPGAQAPEYLDGTLVGDYGFDPFGL 305
           LWFP A+ P  L G    D GFDP  L
Sbjct: 189 LWFPNAEPPALLTGEYPADRGFDPLNL 215
to top
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast|
           precursor (Light-harvesting complex II protein 5)
           (LHCB5) (LHCIIc)
          Length = 280

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 5/36 (13%)
 Frame = +3

Query: 216 DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLG 308
           DR ++ P      ++ PEYL+G + GDYG+DPFGLG
Sbjct: 66  DRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLG 101
to top
>CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, chloroplast|
           precursor (CAB-10A) (LHCP)
          Length = 256

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
 Frame = +3

Query: 228 WFPGAQA------PEYLDGTLVGDYGFDPFGLG 308
           W P  +       PE+LDG+L GDYGFDP GLG
Sbjct: 55  WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLG 87
to top
>CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, chloroplast|
           precursor (CAB-10B) (LHCP)
          Length = 256

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 6/33 (18%)
 Frame = +3

Query: 228 WFPGAQA------PEYLDGTLVGDYGFDPFGLG 308
           W P  ++      PE+LDG+L GD+GFDP GLG
Sbjct: 55  WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLG 87
to top
>CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chloroplast|
           precursor
          Length = 261

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
 Frame = +3

Query: 228 WFPGAQA------PEYLDGTLVGDYGFDPFGLG 308
           W P  +       PE+LDG+L GD+GFDP GLG
Sbjct: 60  WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLG 92
to top
>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor|
           [Contains: LH35 protein 1; LH35 protein 2] (Fragment)
          Length = 331

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 225 LWFPGAQAPEYLDGTLVGDYGFDPFGL 305
           +WFPGAQ P +L G    D GFDP  +
Sbjct: 161 VWFPGAQPPAHLTGEYPADRGFDPLSV 187
to top
>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 21/53 (39%), Positives = 23/53 (43%)
 Frame = +2

Query: 8    RHPNARKGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRGAVRL 166
            R    R GRGG+             GR G   PR   GGPG   RA RG VR+
Sbjct: 1442 RGRGGRGGRGGR-------------GRGGGRAPRGGGGGPGGGGRAGRGEVRV 1481
to top
>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast|
           precursor (LHCII type I CAB-AB10) (LHCP)
          Length = 268

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = +3

Query: 114 RLADPA---PQNGRIVARFGFGXXXXXXXXXXXXXTTDRPLWFPG---AQAPEYLDGTLV 275
           ++A P+   P +  ++   GF              T DR + + G    + P YL G   
Sbjct: 19  KIAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTCDRRVKYLGPFSGEWPSYLTGEFP 78

Query: 276 GDYGFDPFGL 305
           GDYG+D  GL
Sbjct: 79  GDYGWDTAGL 88
to top
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,|
           chloroplast precursor (CAB)
          Length = 268

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 240 AQAPEYLDGTLVGDYGFDPFGL 305
           AQ P YL+G   GDYG+D  GL
Sbjct: 64  AQTPSYLNGEFPGDYGWDTAGL 85
to top
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,|
           chloroplast precursor (DE Chlorophyll a-b binding
           protein type I F3) (CAB-F3) (LHCP)
          Length = 265

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 213 TDRPLW---FPGAQAPEYLDGTLVGDYGFDPFGL 305
           +DRPL+   F G+  P YL G   GDYG+D  GL
Sbjct: 52  SDRPLYLGPFSGSP-PSYLSGEFPGDYGWDTAGL 84
to top
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type III CAB-13)
          Length = 265

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +3

Query: 240 AQAPEYLDGTLVGDYGFDPFGL 305
           AQ P YL+G   GDYG+D  GL
Sbjct: 61  AQTPSYLNGEFPGDYGWDTAGL 82
to top
>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1497

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 14  PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRGA 157
           P   KG+ G   +  +       GR G   PR  AG PG+ E+  RGA
Sbjct: 601 PQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGERGA 648
to top
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
 Frame = +3

Query: 102 FLGTRLADPAPQNG------------RIVARFGFGXXXXXXXXXXXXXTTDRPLWFP--G 239
           F G +L+   PQN             R+  R   G               DR L+     
Sbjct: 16  FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFS 75

Query: 240 AQAPEYLDGTLVGDYGFDPFGL 305
            + P YL G   GDYG+D  GL
Sbjct: 76  GEPPSYLTGEFPGDYGWDTAGL 97
to top
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 269

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           DRP +      + P YL+G   GDYG+D  GL
Sbjct: 56  DRPKFLGPFSGETPSYLNGEFAGDYGWDTAGL 87
to top
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 263

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 8/77 (10%)
 Frame = +3

Query: 99  TFLGTRLADPAPQNGRIVARFGFGXXXXXXXXXXXXXTT------DRPLWFP--GAQAPE 254
           +FLGT     AP+   +V R G                       DRP +      Q P 
Sbjct: 11  SFLGT-----APRRDELVRRVGDSGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPS 65

Query: 255 YLDGTLVGDYGFDPFGL 305
           YL G   GDYG+D  GL
Sbjct: 66  YLTGEFPGDYGWDTAGL 82
to top
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor|
           (LHCII type I CAB-5) (LHCP) (Fragment)
          Length = 237

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           DRP +      Q P YL G   GDYG+D  GL
Sbjct: 25  DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 56
to top
>CB21_SILPR (P12332) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 205

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           DRP +      Q P YL G   GDYG+D  GL
Sbjct: 52  DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 83
to top
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
 Frame = +3

Query: 102 FLGTRLADPAPQNG------------RIVARFGFGXXXXXXXXXXXXXTTDRPLWFP--G 239
           F G +L+   PQN             R+  R   G               DR ++     
Sbjct: 16  FAGAQLSSVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFS 75

Query: 240 AQAPEYLDGTLVGDYGFDPFGL 305
            + P YL G   GDYG+D  GL
Sbjct: 76  GEPPSYLTGEFPGDYGWDTAGL 97
to top
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 26  KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGA 133
           KG GG      ++      G RGEH P  PAG PGA
Sbjct: 778 KGEGGSPGLPGIAGPRGGPGERGEHGPPGPAGFPGA 813
to top
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor|
           (LHCII type I CAB-37) (LHCP)
          Length = 265

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           DRP +      Q P YL G   GDYG+D  GL
Sbjct: 53  DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
to top
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor|
           (LHCII type I CAB-4) (LHCP)
          Length = 265

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           DRP +      Q P YL G   GDYG+D  GL
Sbjct: 53  DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
to top
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor|
           (LHCII type I CAB-36) (LHCP)
          Length = 265

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           DRP +      Q P YL G   GDYG+D  GL
Sbjct: 53  DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 84
to top
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 26  KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGA 133
           KG GG      ++      G RGEH P  PAG PGA
Sbjct: 778 KGEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGA 813
to top
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           +AP YL G   GDYG+D  GL
Sbjct: 66  EAPSYLTGEFPGDYGWDTAGL 86
to top
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           +AP YL G   GDYG+D  GL
Sbjct: 66  EAPSYLTGEFPGDYGWDTAGL 86
to top
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 253

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 231 FPGAQAPEYLDGTLVGDYGFDPFGL 305
           F     PEYL G   GDYG+D  GL
Sbjct: 45  FSENDTPEYLTGEFPGDYGWDTAGL 69
to top
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           +AP YL G   GDYG+D  GL
Sbjct: 63  EAPSYLTGEFPGDYGWDTAGL 83
to top
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 264

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           DRP +      Q P YL G   GDYG+D  GL
Sbjct: 52  DRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGL 83
to top
>HNRL1_MOUSE (Q8VDM6) Heterogeneous nuclear ribonucleoprotein U-like protein 1|
          Length = 859

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 26  KGRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPGAAERAHRG 154
           +GRGG    +R  + G  GG RG    R   GG G     +RG
Sbjct: 618 RGRGGGGGFQRYDNRGPPGGNRGGFQNRGGGGGSGGGGGNYRG 660
to top
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           +AP YL G   GDYG+D  GL
Sbjct: 65  EAPSYLTGEFPGDYGWDTAGL 85
to top
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor|
           (LHCII type II CAB-215) (LHCP)
          Length = 265

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           DRP +      Q P YL G   GDYG+D  GL
Sbjct: 53  DRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGL 84
to top
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           +AP YL G   GDYG+D  GL
Sbjct: 65  EAPSYLTGEFPGDYGWDTAGL 85
to top
>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor|
          Length = 3137

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +2

Query: 17   NARKGRGGQS*EERVSSHGFVG--GRRGEHVPRDPAGGPG-AAERAHRG 154
            + R G GG   + R    GFVG  G +G    R  AGGPG    R  RG
Sbjct: 2301 DGRDGIGGPGPKGRKGERGFVGYPGPKGGPGDRGGAGGPGPKGNRGRRG 2349
to top
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor|
           (LHCII type II CAB-151) (LHCP)
          Length = 265

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           DRP +      Q P YL G   GDYG+D  GL
Sbjct: 53  DRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGL 84
to top
>PP1RA_RAT (O55000) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (PNUTS
           protein) (MHC class I region proline-rich protein CAT53)
          Length = 872

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 14  PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRD-PAGGPGAAERAHRG 154
           PN R G GG          G VGG  G H P + P G  G+  R+H G
Sbjct: 734 PNGRGGPGGG---------GMVGG--GGHRPHEGPGGSMGSGHRSHEG 770
to top
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I|
           CAB-AB96) (LHCP) (Major 15) (Fragment)
          Length = 228

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 27  ESPSYLTGEFPGDYGWDTAGL 47
to top
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP)
          Length = 256

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 DRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           DR  W        P YL G   GDYG+D  GL
Sbjct: 43  DRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGL 74
to top
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 66  ESPSYLTGEFPGDYGWDTAGL 86
to top
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 66  ESPSYLTGEFPGDYGWDTAGL 86
to top
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 66  ESPSYLTGEFPGDYGWDTAGL 86
to top
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 66  ESPSYLTGEFPGDYGWDTAGL 86
to top
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 66  ESPSYLTGEFPGDYGWDTAGL 86
to top
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 68  ESPSYLTGEFPGDYGWDTAGL 88
to top
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 65  ESPSYLTGEFPGDYGWDTAGL 85
to top
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 65  ESPSYLTGEFPGDYGWDTAGL 85
to top
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 63  ESPSYLTGEFPGDYGWDTAGL 83
to top
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 67  ESPSYLTGEFPGDYGWDTAGL 87
to top
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 65  ESPSYLTGEFPGDYGWDTAGL 85
to top
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 65  ESPSYLTGEFPGDYGWDTAGL 85
to top
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 64  ESPSYLTGEFPGDYGWDTAGL 84
to top
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           ++P YL G   GDYG+D  GL
Sbjct: 64  ESPSYLTGEFPGDYGWDTAGL 84
to top
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 213 TDRPLWFP--GAQAPEYLDGTLVGDYGFDPFGL 305
           +DR L+      + P YL G   GDYG+D  GL
Sbjct: 53  SDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGL 85
to top
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 44  EPPSYLTGEFPGDYGWDTAGL 64
to top
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 61  EPPSYLTGEFPGDYGWDTAGL 81
to top
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 73  EPPSYLTGEFPGDYGWDTAGL 93
to top
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 62  EPPSYLTGEFPGDYGWDTAGL 82
to top
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 54  EPPSYLTGEFPGDYGWDTAGL 74
to top
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 60  EPPSYLTGEFPGDYGWDTAGL 80
to top
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1|
           (Chlorophyll a-b binding protein of LHCII type I) (CAB)
           (LHCP) (Fragment)
          Length = 206

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 5   EPPSYLTGEFPGDYGWDTAGL 25
to top
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 64  EPPSYLTGEFPGDYGWDTAGL 84
to top
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 64  EPPSYLTGEFPGDYGWDTAGL 84
to top
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 64  EPPSYLTGEFPGDYGWDTAGL 84
to top
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           + P YL G   GDYG+D  GL
Sbjct: 64  EPPSYLTGEFPGDYGWDTAGL 84
to top
>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1419

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 29  GRGGQS*EERVSSHGFVGGRRGEHVPRDPAGGPG-AAERAHRGA 157
           G  GQ+ E  ++      G +GE  P  P G PG A E   RGA
Sbjct: 382 GPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGA 425
to top
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 925

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
 Frame = +2

Query: 14  PNARKGRGGQS*EERVSSHGFVGGRRGEHVPRD-PAGGPGAAERAHRG 154
           P+   G G  S        G  GG  G H P + P GG G   R H G
Sbjct: 756 PHEGPGGGMSSGSGHRPHEGPGGGMGGGHRPHEGPGGGMGGGHRPHEG 803
to top
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1459

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 29  GRGGQS*EERVSSHGFVG--GRRGEHVPRDPAGGPG-AAERAHRGA 157
           G  GQ+ E  ++  GF G  G +GE  P  P G PG A E   RGA
Sbjct: 422 GPKGQAGEPGIA--GFKGDQGPKGETGPAGPQGAPGPAGEEGKRGA 465
to top
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 243 QAPEYLDGTLVGDYGFDPFGL 305
           +AP YL G    DYG+D  GL
Sbjct: 66  EAPSYLTGEFPSDYGWDTAGL 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.143    0.531 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,363,381
Number of Sequences: 219361
Number of extensions: 462192
Number of successful extensions: 1172
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
to top