ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet79e01 |
|---|---|
| Clone Library Name | barley_pub |
>RL9_ARATH (P49209) 60S ribosomal protein L9| Length = 194 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/31 (74%), Positives = 27/31 (87%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MKTIL+SETMDIP+ VT+KV AK+I V GPR Sbjct: 1 MKTILSSETMDIPDSVTIKVHAKVIEVEGPR 31
>RL9_ORYSA (P49210) 60S ribosomal protein L9| Length = 190 Score = 48.1 bits (113), Expect = 6e-06 Identities = 22/31 (70%), Positives = 29/31 (93%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MKTILASETM+IPE +TV+V+AK+++V GPR Sbjct: 1 MKTILASETMEIPEGLTVQVAAKVVTVEGPR 31
>RL9_PEA (P30707) 60S ribosomal protein L9 (Gibberellin-regulated protein| GA) Length = 193 Score = 47.8 bits (112), Expect = 8e-06 Identities = 22/31 (70%), Positives = 28/31 (90%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MKTIL+SETM+IP+ VT+KV+AK+I V GPR Sbjct: 1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPR 31
>RL9_ICTPU (Q90YW0) 60S ribosomal protein L9| Length = 192 Score = 38.5 bits (88), Expect = 0.005 Identities = 16/31 (51%), Positives = 24/31 (77%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MKTIL+++T+DIP+ V V + + +SV GPR Sbjct: 1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPR 31
>RL9_BOVIN (Q3SYR7) 60S ribosomal protein L9| Length = 192 Score = 37.4 bits (85), Expect = 0.011 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MKTIL+++T+DIPE V + + + + V GPR Sbjct: 1 MKTILSNQTVDIPENVDINLKGRTVIVKGPR 31
>RL9_RAT (P17077) 60S ribosomal protein L9| Length = 192 Score = 37.0 bits (84), Expect = 0.014 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MKTIL+++T+DIPE V + + + + V GPR Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPR 31
>RL9_MOUSE (P51410) 60S ribosomal protein L9| Length = 192 Score = 37.0 bits (84), Expect = 0.014 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MKTIL+++T+DIPE V + + + + V GPR Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPR 31
>RL9_MACFA (Q5IFJ7) 60S ribosomal protein L9| Length = 192 Score = 37.0 bits (84), Expect = 0.014 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MKTIL+++T+DIPE V + + + + V GPR Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPR 31
>RL9_HUMAN (P32969) 60S ribosomal protein L9| Length = 192 Score = 37.0 bits (84), Expect = 0.014 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MKTIL+++T+DIPE V + + + + V GPR Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPR 31
>RL9_SPOFR (Q963B7) 60S ribosomal protein L9| Length = 190 Score = 34.3 bits (77), Expect = 0.090 Identities = 14/31 (45%), Positives = 24/31 (77%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MK I+A++ + IPE +TV V +++++V GPR Sbjct: 1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPR 31
>RL9A_SCHPO (Q10232) 60S ribosomal protein L9-A| Length = 190 Score = 33.1 bits (74), Expect = 0.20 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = +2 Query: 128 KTILASETMDIPEEVTVKVSAKMISVTGPR 217 + I ET+ IP+ VTV + A+ ++VTGPR Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPR 32
>RL9B_YEAST (P51401) 60S ribosomal protein L9-B (L8) (YL11) (RP25)| Length = 191 Score = 32.7 bits (73), Expect = 0.26 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MK I + ++IPE VTV + ++++ V GPR Sbjct: 1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPR 31
>RL9_HAECO (O02376) 60S ribosomal protein L9 (Fragment)| Length = 141 Score = 32.7 bits (73), Expect = 0.26 Identities = 13/31 (41%), Positives = 22/31 (70%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MK + +++T+D P+ VT V +++ VTGPR Sbjct: 1 MKLVESNDTVDFPDGVTFTVKNRVVHVTGPR 31
>RL9A_YEAST (P05738) 60S ribosomal protein L9-A (L8) (YL11) (RP25)| Length = 191 Score = 32.3 bits (72), Expect = 0.34 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MK I + +++PE VTV + ++++ V GPR Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPR 31
>RL9B_SCHPO (O74905) 60S ribosomal protein L9-B| Length = 189 Score = 32.3 bits (72), Expect = 0.34 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +2 Query: 128 KTILASETMDIPEEVTVKVSAKMISVTGPR 217 + I ET+ IPE V+V + A++++V GPR Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPR 32
>RL9_CAEEL (Q95Y90) 60S ribosomal protein L9| Length = 189 Score = 30.8 bits (68), Expect = 1.00 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 MK I +++T+ PE VT V +++ VTGPR Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPR 31
>RL9_DROME (P50882) 60S ribosomal protein L9| Length = 190 Score = 29.6 bits (65), Expect = 2.2 Identities = 10/31 (32%), Positives = 23/31 (74%) Frame = +2 Query: 125 MKTILASETMDIPEEVTVKVSAKMISVTGPR 217 M+TI +++ + IP+++ V A+++++TG R Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTR 31
>RL6_STAS1 (Q49ZF3) 50S ribosomal protein L6| Length = 178 Score = 27.7 bits (60), Expect = 8.4 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 137 LASETMDIPEEVTVKVSAKMISVTGPR 217 + + +DIP +VTV V I+V GP+ Sbjct: 4 VGKKIIDIPSDVTVSVEGNTITVKGPK 30 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,772,874 Number of Sequences: 219361 Number of extensions: 50486 Number of successful extensions: 308 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 307 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 308 length of database: 80,573,946 effective HSP length: 48 effective length of database: 70,044,618 effective search space used: 1681070832 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
