>gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds
          Length = 1044

 Score =  321 bits (162), Expect = 5e-85
 Identities = 195/206 (94%)
 Strand = Plus / Plus

                                                                       
Query: 12  caccaccacagccccactgttagcgagcacgcacaccggacacgcacgagtctccttgaa 71
           |||||||||||||||||| | || ||||||| || |||||||||||||||||| ||||||
Sbjct: 1   caccaccacagccccactctcagagagcacggacgccggacacgcacgagtcttcttgaa 60

                                                                       
Query: 72  gcaatggcgaccaccgcgatggcgctctcctcctcgtccttcgccgggaaggcggtcaag 131
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61  gcaatggcgaccaccgcgatggcgctctccccctcgtccttcgccgggaaggcggtcaag 120

                                                                       
Query: 132 gacctgccgtcgtcggcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgcc 191
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 gacctgccgtcgtcggcgctcttcggggaggcgcgcgtcaccatgcgcaagaccgcggcc 180

                                     
Query: 192 aaggtcaagccggtgtcgtccagcag 217
           |||| |||||||||||||||| ||||
Sbjct: 181 aaggccaagccggtgtcgtccggcag 206

>emb|X13908.1|OSCABR1 Rice cab1R gene for light harvesting chlorophyll a/b-binding
           protein
          Length = 1664

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 147 gcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgccaaggtcaagccgg 204
           ||||| ||||| ||||||||  |||||||||||||||||||||| |||  ||||||||
Sbjct: 513 gcgctcttcggcgaggcgcggatcaccatgcgcaagaccgccgcgaagcccaagccgg 570

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                          
Query: 147      gcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgccaaggtcaagccgg 204
                ||||| ||||| ||||||||  |||||||||||||||||||||| |||  ||||||||
Sbjct: 10793051 gcgctcttcggcgaggcgcggatcaccatgcgcaagaccgccgcgaagcccaagccgg 10793108

>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                       
Query: 147   gcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgccaaggtcaagccgg 204
             ||||| ||||| ||||||||  |||||||||||||||||||||| |||  ||||||||
Sbjct: 16774 gcgctcttcggcgaggcgcggatcaccatgcgcaagaccgccgcgaagcccaagccgg 16831

>dbj|AP005700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0085I16
          Length = 141701

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                        
Query: 147    gcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgccaaggtcaagccgg 204
              ||||| ||||| ||||||||  |||||||||||||||||||||| |||  ||||||||
Sbjct: 129669 gcgctcttcggcgaggcgcggatcaccatgcgcaagaccgccgcgaagcccaagccgg 129726

>dbj|AK104350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G02, full
           insert sequence
          Length = 1013

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 147 gcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgccaaggtcaagccgg 204
           ||||| ||||| ||||||||  |||||||||||||||||||||| |||  ||||||||
Sbjct: 119 gcgctcttcggcgaggcgcggatcaccatgcgcaagaccgccgcgaagcccaagccgg 176

>dbj|AK104288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-E05, full
           insert sequence
          Length = 1021

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 147 gcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgccaaggtcaagccgg 204
           ||||| ||||| ||||||||  |||||||||||||||||||||| |||  ||||||||
Sbjct: 124 gcgctcttcggcgaggcgcggatcaccatgcgcaagaccgccgcgaagcccaagccgg 181

>dbj|AK104281.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-D01, full
           insert sequence
          Length = 1056

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 147 gcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgccaaggtcaagccgg 204
           ||||| ||||| ||||||||  |||||||||||||||||||||| |||  ||||||||
Sbjct: 126 gcgctcttcggcgaggcgcggatcaccatgcgcaagaccgccgcgaagcccaagccgg 183

>dbj|AK060851.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E08, full
           insert sequence
          Length = 1235

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 147 gcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgccaaggtcaagccgg 204
           ||||| ||||| ||||||||  |||||||||||||||||||||| |||  ||||||||
Sbjct: 124 gcgctcttcggcgaggcgcggatcaccatgcgcaagaccgccgcgaagcccaagccgg 181

>dbj|AK058305.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H02, full
           insert sequence
          Length = 1045

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 147 gcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgccaaggtcaagccgg 204
           ||||| ||||| ||||||||  |||||||||||||||||||||| |||  ||||||||
Sbjct: 124 gcgctcttcggcgaggcgcggatcaccatgcgcaagaccgccgcgaagcccaagccgg 181

>dbj|D00641.1|RICLHCP1 Oryza sativa (japonica cultivar-group) mRNA for type I
           light-harvesting chlorophyll a/b binding protein of
           photosystem II (LHCPII), complete cds
          Length = 1022

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 51/58 (87%)
 Strand = Plus / Plus

                                                                     
Query: 147 gcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgccgccaaggtcaagccgg 204
           ||||| ||||| ||||||||  |||||||||||||||||||||| |||  ||||||||
Sbjct: 105 gcgctcttcggcgaggcgcggatcaccatgcgcaagaccgccgcgaagcccaagccgg 162

>gb|M10144.1|WHTCAB Wheat major chlorophyll a/b-binding protein gene, complete cds
          Length = 1191

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                       
Query: 72  gcaatggcgaccaccgcgatggcgctctcctcctcgtccttcgccgggaaggcggtcaag 131
           ||||||||| ||||| | ||| | || ||||| |||||||||||||| ||||| ||||||
Sbjct: 198 gcaatggcggccaccaccatgtctctttcctcttcgtccttcgccggcaaggccgtcaag 257

                            
Query: 132 gacctgccgtcgtcggc 148
            || |||| ||||||||
Sbjct: 258 aacttgccctcgtcggc 274

>emb|X63205.1|ZMCAB48 Zea mays cab48 gene for chlorophyll a/b binding protein precursor
          Length = 2780

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                
Query: 169  tcaccatgcgcaagaccgccgccaaggtcaagccgg 204
            ||||||||||||||||||||||||||  ||||||||
Sbjct: 2015 tcaccatgcgcaagaccgccgccaagcccaagccgg 2050

>emb|X89023.1|HVLHCIITI H.vulgare mRNA for LHC II type I protein
          Length = 934

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 144 tcggcgcttttcggggaggcgcgcgtcaccatgcgcaagaccgc 187
           ||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct: 88  tcggctctcttcggtgaggctcgcgtcaccatgcgcaagaccgc 131

>gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding protein WCAB precursor
           (Wcab) mRNA, complete cds
          Length = 918

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                       
Query: 96  ctctcctcctcgtccttcgccgggaaggcggtcaaggacctgccgtcgtcggcgcttttc 155
           |||||||||||| |||| ||||| |||||||| ||| |  | || || | ||| || || 
Sbjct: 31  ctctcctcctcgacctttgccggcaaggcggtgaagaatgtaccatctttggctctcttg 90

                                           
Query: 156 ggggaggcgcgcgtcaccatgcgcaagaccgc 187
           || ||||| |||||||||||||||||||||||
Sbjct: 91  ggcgaggcccgcgtcaccatgcgcaagaccgc 122

>emb|AJ635207.1| Triticum durum ssp. durum partial mRNA for putative chlorophyll a/b
           binding protein (cab gene)
          Length = 760

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 99  tcctcctcgtccttcgccgggaaggcggtcaaggacctgccgtcgtcggc 148
           ||||| |||||||||||||| ||||| |||||| || |||| ||||||||
Sbjct: 20  tcctcttcgtccttcgccggcaaggccgtcaagaacttgccctcgtcggc 69

>gb|AY389606.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein
           40 mRNA, complete cds
          Length = 859

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 169 tcaccatgcgcaagaccgccgccaaggtcaagccggtgtcgtccagcag 217
           |||| |||||||||||||||||||||  |||| |||| |||||| ||||
Sbjct: 149 tcacgatgcgcaagaccgccgccaagcccaagacggtctcgtccggcag 197

>dbj|AB115771.1| Physcomitrella patens subsp. patens PpLhcb1 gene for
           light-harvesting chlorophyll a/b-binding protein 1,
           complete cds
          Length = 1975

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 160 aggcgcgcgtcaccatgcgcaagaccg 186
           |||| ||||||||||||||||||||||
Sbjct: 762 aggctcgcgtcaccatgcgcaagaccg 788

>emb|AJ234427.1|HVU234427 Hordeum vulgare partial mRNA; clone cMWG0701.uni
          Length = 312

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 169 tcaccatgcgcaagaccgccgccaagg 195
           ||||||||||||||||||| |||||||
Sbjct: 139 tcaccatgcgcaagaccgcggccaagg 165

>gb|M29334.1|LGILHCPABP L.gibba light-harvesting chlorophyll a/b protein gene, complete cds
          Length = 1633

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 90  atggcgctctcctcctcgtccttcgccgggaaggcggtcaag 131
           ||||| ||||||||| | ||| ||| ||||||||||||||||
Sbjct: 407 atggctctctcctccccctccctcgtcgggaaggcggtcaag 448

>dbj|AB026686.1| Physcomitrella patens mRNA for chlorophyll a/b-binding protein
           precursor, complete cds
          Length = 964

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 165 cgcgtcaccatgcgcaagaccg 186
           ||||||||||||||||||||||
Sbjct: 142 cgcgtcaccatgcgcaagaccg 163

>gb|S54369.1| phbCAB operon: phbA=beta-ketothiolase, phbC=poly(3-hydroxyalkanoate)
            synthase [Thiocystis violacea, Genomic, 5 genes, 7339 nt]
          Length = 7339

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 170  caccatgcgcaagaccgccgccaag 194
            ||||| |||||||||||||||||||
Sbjct: 2913 caccaggcgcaagaccgccgccaag 2937

>gb|L01113.1|TSSPHBAC Thiocystis violacea beta-ketothiolase and PHA synthase (phbA and
            phbC) genes, complete cds
          Length = 7339

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 170  caccatgcgcaagaccgccgccaag 194
            ||||| |||||||||||||||||||
Sbjct: 2913 caccaggcgcaagaccgccgccaag 2937

>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    tggcgaccaccgcgatggcg 95
             ||||||||||||||||||||
Sbjct: 13528 tggcgaccaccgcgatggcg 13509

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 109     ccttcgccgggaaggcggtc 128
               ||||||||||||||||||||
Sbjct: 3161392 ccttcgccgggaaggcggtc 3161411

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 183     accgccgccaaggtcaagccggtg 206
               ||||||| ||||||||||||||||
Sbjct: 4175455 accgccgacaaggtcaagccggtg 4175478

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 131     ggacctgccgtcgtcggcgc 150
               ||||||||||||||||||||
Sbjct: 3122253 ggacctgccgtcgtcggcgc 3122272

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     ggcgctctcctcctcgtcct 111
              ||||||||||||||||||||
Sbjct: 584075 ggcgctctcctcctcgtcct 584056

>emb|AJ628642.1| Streptomyces hygroscopicus subsp. hygroscopicus genomic region of the
            gene cluster for hygromycin B biosynthetis, strain DSM
            40578
          Length = 34921

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 119  gaaggcggtcaaggacctgc 138
            ||||||||||||||||||||
Sbjct: 1406 gaaggcggtcaaggacctgc 1425


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,237,454
Number of Sequences: 3902068
Number of extensions: 1237454
Number of successful extensions: 99690
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98844
Number of HSP's gapped (non-prelim): 846
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)