ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet79d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT018572.1| Zea mays clone EL01N0443D02.d mRNA sequence 165 7e-38
2dbj|AK102179.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 7e-32
3dbj|AK059452.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 7e-32
4gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome ... 96 6e-17
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 96 6e-17
6dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic D... 96 6e-17
7gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 44 0.18
8ref|NM_119182.2| Arabidopsis thaliana ATCNGC17; calmodulin bindi... 42 0.72
9gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 42 0.72
10emb|CR628337.1| Legionella pneumophila str. Lens complete genome 42 0.72
11emb|CR628336.1| Legionella pneumophila str. Paris complete genome 42 0.72
12gb|AY124000.1| Arabidopsis thaliana AT4g30360/F17I23_300 mRNA, c... 42 0.72
13emb|BX842703.3| Zebrafish DNA sequence from clone DKEY-13F9 in l... 42 0.72
14gb|BT002284.1| Arabidopsis thaliana At4g30360/F17I23_300 mRNA, c... 42 0.72
15emb|AL606934.12| Mouse DNA sequence from clone RP23-138L21 on ch... 42 0.72
16emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segmen... 40 2.8
17dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 2.8
18emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in... 40 2.8

>gb|BT018572.1| Zea mays clone EL01N0443D02.d mRNA sequence
          Length = 1964

 Score =  165 bits (83), Expect = 7e-38
 Identities = 165/191 (86%), Gaps = 1/191 (0%)
 Strand = Plus / Plus

                                                                       
Query: 33  atttgctatagcaattggtgctatcagtctcatactctttgctcagctgattggcaaaat 92
           |||||| |||||||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 643 atttgcgatagcaattggtgctatcagcctcatactctttgctcagttgattggc-aaat 701

                                                                       
Query: 93  gcagacatacctgcaatctgttagcaaaaggctcgaagagtggaggttgaggcagcggga 152
           ||||||||||||||| ||| | || |||||||| |||||||||||| |||| |   ||||
Sbjct: 702 gcagacatacctgcagtctatcagtaaaaggcttgaagagtggaggctgagccttaggga 761

                                                                       
Query: 153 catggaggagtggatgagacatcaccggctcccacccgaccttcaagaacgtgtccagcg 212
           |||||| |||||||||||||| || |  |||||| |  | |||||||||||||| | |||
Sbjct: 762 catggatgagtggatgagacaccatcaactcccatctcatcttcaagaacgtgtgcggcg 821

                      
Query: 213 gtttgttcaag 223
           ||| |||||||
Sbjct: 822 gttcgttcaag 832



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>dbj|AK102179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086L20, full
            insert sequence
          Length = 2458

 Score =  145 bits (73), Expect = 7e-32
 Identities = 139/161 (86%)
 Strand = Plus / Plus

                                                                        
Query: 25   gagaacatatttgctatagcaattggtgctatcagtctcatactctttgctcagctgatt 84
            ||||||| |||||| ||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 1294 gagaacacatttgccatagcaattggtgctcttagtctcgtactctttgctcagctgatt 1353

                                                                        
Query: 85   ggcaaaatgcagacatacctgcaatctgttagcaaaaggctcgaagagtggaggttgagg 144
            ||||| |||||||||||| |||| ||  | || |||||||| |||||||||||| |  ||
Sbjct: 1354 ggcaatatgcagacatacttgcagtccatcagtaaaaggcttgaagagtggaggctccgg 1413

                                                     
Query: 145  cagcgggacatggaggagtggatgagacatcaccggctccc 185
            ||  | || ||||||||||||||||||||||| | ||||||
Sbjct: 1414 caaagagatatggaggagtggatgagacatcatcagctccc 1454



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>dbj|AK059452.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B08, full
            insert sequence
          Length = 2100

 Score =  145 bits (73), Expect = 7e-32
 Identities = 139/161 (86%)
 Strand = Plus / Plus

                                                                        
Query: 25   gagaacatatttgctatagcaattggtgctatcagtctcatactctttgctcagctgatt 84
            ||||||| |||||| ||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 936  gagaacacatttgccatagcaattggtgctcttagtctcgtactctttgctcagctgatt 995

                                                                        
Query: 85   ggcaaaatgcagacatacctgcaatctgttagcaaaaggctcgaagagtggaggttgagg 144
            ||||| |||||||||||| |||| ||  | || |||||||| |||||||||||| |  ||
Sbjct: 996  ggcaatatgcagacatacttgcagtccatcagtaaaaggcttgaagagtggaggctccgg 1055

                                                     
Query: 145  cagcgggacatggaggagtggatgagacatcaccggctccc 185
            ||  | || ||||||||||||||||||||||| | ||||||
Sbjct: 1056 caaagagatatggaggagtggatgagacatcatcagctccc 1096



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>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
             OSJNBa0035B22, complete sequence
          Length = 155788

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                         
Query: 25    gagaacatatttgctatagcaattggtgctatcagtctcatactctttgctcagctgatt 84
             ||||||| |||||| ||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 99559 gagaacacatttgccatagcaattggtgctcttagtctcgtactctttgctcagctgatt 99618

                         
Query: 85    ggcaaaatgcag 96
             ||||| ||||||
Sbjct: 99619 ggcaatatgcag 99630



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                          
Query: 118    aaaaggctcgaagagtggaggttgaggcagcgggacatggaggagtggatgagacatcac 177
              |||||||| |||||||||||| |  ||||  | || ||||||||||||||||||||||| 
Sbjct: 99969  aaaaggcttgaagagtggaggctccggcaaagagatatggaggagtggatgagacatcat 100028

                      
Query: 178    cggctccc 185
              | ||||||
Sbjct: 100029 cagctccc 100036



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                            
Query: 25       gagaacatatttgctatagcaattggtgctatcagtctcatactctttgctcagctgatt 84
                ||||||| |||||| ||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 21894125 gagaacacatttgccatagcaattggtgctcttagtctcgtactctttgctcagctgatt 21894184

                            
Query: 85       ggcaaaatgcag 96
                ||||| ||||||
Sbjct: 21894185 ggcaatatgcag 21894196



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                            
Query: 118      aaaaggctcgaagagtggaggttgaggcagcgggacatggaggagtggatgagacatcac 177
                |||||||| |||||||||||| |  ||||  | || ||||||||||||||||||||||| 
Sbjct: 21894535 aaaaggcttgaagagtggaggctccggcaaagagatatggaggagtggatgagacatcat 21894594

                        
Query: 178      cggctccc 185
                | ||||||
Sbjct: 21894595 cagctccc 21894602



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>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1065_E04
          Length = 115865

 Score = 95.6 bits (48), Expect = 6e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                         
Query: 25    gagaacatatttgctatagcaattggtgctatcagtctcatactctttgctcagctgatt 84
             ||||||| |||||| ||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 24842 gagaacacatttgccatagcaattggtgctcttagtctcgtactctttgctcagctgatt 24901

                         
Query: 85    ggcaaaatgcag 96
             ||||| ||||||
Sbjct: 24902 ggcaatatgcag 24913



 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 118   aaaaggctcgaagagtggaggttgaggcagcgggacatggaggagtggatgagacatcac 177
             |||||||| |||||||||||| |  ||||  | || ||||||||||||||||||||||| 
Sbjct: 25252 aaaaggcttgaagagtggaggctccggcaaagagatatggaggagtggatgagacatcat 25311

                     
Query: 178   cggctccc 185
             | ||||||
Sbjct: 25312 cagctccc 25319



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 188     ccgaccttcaagaacgtgtccagcgg 213
               ||||||||||||||| ||||||||||
Sbjct: 5338144 ccgaccttcaagaacctgtccagcgg 5338119



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>ref|NM_119182.2| Arabidopsis thaliana ATCNGC17; calmodulin binding / cyclic nucleotide
            binding / ion channel AT4G30360 (ATCNGC17) mRNA, complete
            cds
          Length = 2625

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 67   ctctttgctcagctgattggcaaaatgcagacatacctgcaatct 111
            |||||||| || || ||||| || ||||||||||| |||||||||
Sbjct: 1384 ctctttgcccatctcattgggaatatgcagacatatctgcaatct 1428



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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      ggcaaaatgcagacatacctg 105
               |||||||||||||||||||||
Sbjct: 2819801 ggcaaaatgcagacatacctg 2819781



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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      ggcaaaatgcagacatacctg 105
               |||||||||||||||||||||
Sbjct: 2755984 ggcaaaatgcagacatacctg 2755964



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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 85      ggcaaaatgcagacatacctg 105
               |||||||||||||||||||||
Sbjct: 2922210 ggcaaaatgcagacatacctg 2922190



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>gb|AY124000.1| Arabidopsis thaliana AT4g30360/F17I23_300 mRNA, complete cds
          Length = 2625

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 67   ctctttgctcagctgattggcaaaatgcagacatacctgcaatct 111
            |||||||| || || ||||| || ||||||||||| |||||||||
Sbjct: 1384 ctctttgcccatctcattgggaatatgcagacatatctgcaatct 1428



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>emb|BX842703.3| Zebrafish DNA sequence from clone DKEY-13F9 in linkage group 21, complete
              sequence
          Length = 208780

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 28     aacatatttgctatagcaatt 48
              |||||||||||||||||||||
Sbjct: 120556 aacatatttgctatagcaatt 120576



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>gb|BT002284.1| Arabidopsis thaliana At4g30360/F17I23_300 mRNA, complete cds
          Length = 2163

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                         
Query: 67   ctctttgctcagctgattggcaaaatgcagacatacctgcaatct 111
            |||||||| || || ||||| || ||||||||||| |||||||||
Sbjct: 1168 ctctttgcccatctcattgggaatatgcagacatatctgcaatct 1212



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>emb|AL606934.12| Mouse DNA sequence from clone RP23-138L21 on chromosome 4, complete
              sequence
          Length = 211580

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 128    aagagtggaggttgaggcagc 148
              |||||||||||||||||||||
Sbjct: 186809 aagagtggaggttgaggcagc 186789



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>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7
          Length = 349652

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     acttattgtcgagaacatat 34
              ||||||||||||||||||||
Sbjct: 107498 acttattgtcgagaacatat 107479



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 67      ctctttgctcagctgattggcaaa 90
               |||||||| |||||||||||||||
Sbjct: 3024523 ctctttgcacagctgattggcaaa 3024546



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>emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in linkage group 9,
              complete sequence
          Length = 192039

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     aaatgcagacatacctgcaa 108
              ||||||||||||||||||||
Sbjct: 185322 aaatgcagacatacctgcaa 185303


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,699,622
Number of Sequences: 3902068
Number of extensions: 1699622
Number of successful extensions: 144385
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144208
Number of HSP's gapped (non-prelim): 170
length of query: 223
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 201
effective length of database: 17,147,199,772
effective search space: 3446587154172
effective search space used: 3446587154172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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