| Clone Name | baet79d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT018572.1| Zea mays clone EL01N0443D02.d mRNA sequence Length = 1964 Score = 165 bits (83), Expect = 7e-38 Identities = 165/191 (86%), Gaps = 1/191 (0%) Strand = Plus / Plus Query: 33 atttgctatagcaattggtgctatcagtctcatactctttgctcagctgattggcaaaat 92 |||||| |||||||||||||||||||| |||||||||||||||||| |||||||| |||| Sbjct: 643 atttgcgatagcaattggtgctatcagcctcatactctttgctcagttgattggc-aaat 701 Query: 93 gcagacatacctgcaatctgttagcaaaaggctcgaagagtggaggttgaggcagcggga 152 ||||||||||||||| ||| | || |||||||| |||||||||||| |||| | |||| Sbjct: 702 gcagacatacctgcagtctatcagtaaaaggcttgaagagtggaggctgagccttaggga 761 Query: 153 catggaggagtggatgagacatcaccggctcccacccgaccttcaagaacgtgtccagcg 212 |||||| |||||||||||||| || | |||||| | | |||||||||||||| | ||| Sbjct: 762 catggatgagtggatgagacaccatcaactcccatctcatcttcaagaacgtgtgcggcg 821 Query: 213 gtttgttcaag 223 ||| ||||||| Sbjct: 822 gttcgttcaag 832
>dbj|AK102179.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086L20, full insert sequence Length = 2458 Score = 145 bits (73), Expect = 7e-32 Identities = 139/161 (86%) Strand = Plus / Plus Query: 25 gagaacatatttgctatagcaattggtgctatcagtctcatactctttgctcagctgatt 84 ||||||| |||||| ||||||||||||||| | |||||| |||||||||||||||||||| Sbjct: 1294 gagaacacatttgccatagcaattggtgctcttagtctcgtactctttgctcagctgatt 1353 Query: 85 ggcaaaatgcagacatacctgcaatctgttagcaaaaggctcgaagagtggaggttgagg 144 ||||| |||||||||||| |||| || | || |||||||| |||||||||||| | || Sbjct: 1354 ggcaatatgcagacatacttgcagtccatcagtaaaaggcttgaagagtggaggctccgg 1413 Query: 145 cagcgggacatggaggagtggatgagacatcaccggctccc 185 || | || ||||||||||||||||||||||| | |||||| Sbjct: 1414 caaagagatatggaggagtggatgagacatcatcagctccc 1454
>dbj|AK059452.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B08, full insert sequence Length = 2100 Score = 145 bits (73), Expect = 7e-32 Identities = 139/161 (86%) Strand = Plus / Plus Query: 25 gagaacatatttgctatagcaattggtgctatcagtctcatactctttgctcagctgatt 84 ||||||| |||||| ||||||||||||||| | |||||| |||||||||||||||||||| Sbjct: 936 gagaacacatttgccatagcaattggtgctcttagtctcgtactctttgctcagctgatt 995 Query: 85 ggcaaaatgcagacatacctgcaatctgttagcaaaaggctcgaagagtggaggttgagg 144 ||||| |||||||||||| |||| || | || |||||||| |||||||||||| | || Sbjct: 996 ggcaatatgcagacatacttgcagtccatcagtaaaaggcttgaagagtggaggctccgg 1055 Query: 145 cagcgggacatggaggagtggatgagacatcaccggctccc 185 || | || ||||||||||||||||||||||| | |||||| Sbjct: 1056 caaagagatatggaggagtggatgagacatcatcagctccc 1096
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 25 gagaacatatttgctatagcaattggtgctatcagtctcatactctttgctcagctgatt 84 ||||||| |||||| ||||||||||||||| | |||||| |||||||||||||||||||| Sbjct: 99559 gagaacacatttgccatagcaattggtgctcttagtctcgtactctttgctcagctgatt 99618 Query: 85 ggcaaaatgcag 96 ||||| |||||| Sbjct: 99619 ggcaatatgcag 99630 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 118 aaaaggctcgaagagtggaggttgaggcagcgggacatggaggagtggatgagacatcac 177 |||||||| |||||||||||| | |||| | || ||||||||||||||||||||||| Sbjct: 99969 aaaaggcttgaagagtggaggctccggcaaagagatatggaggagtggatgagacatcat 100028 Query: 178 cggctccc 185 | |||||| Sbjct: 100029 cagctccc 100036
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 25 gagaacatatttgctatagcaattggtgctatcagtctcatactctttgctcagctgatt 84 ||||||| |||||| ||||||||||||||| | |||||| |||||||||||||||||||| Sbjct: 21894125 gagaacacatttgccatagcaattggtgctcttagtctcgtactctttgctcagctgatt 21894184 Query: 85 ggcaaaatgcag 96 ||||| |||||| Sbjct: 21894185 ggcaatatgcag 21894196 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 118 aaaaggctcgaagagtggaggttgaggcagcgggacatggaggagtggatgagacatcac 177 |||||||| |||||||||||| | |||| | || ||||||||||||||||||||||| Sbjct: 21894535 aaaaggcttgaagagtggaggctccggcaaagagatatggaggagtggatgagacatcat 21894594 Query: 178 cggctccc 185 | |||||| Sbjct: 21894595 cagctccc 21894602
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 95.6 bits (48), Expect = 6e-17 Identities = 66/72 (91%) Strand = Plus / Plus Query: 25 gagaacatatttgctatagcaattggtgctatcagtctcatactctttgctcagctgatt 84 ||||||| |||||| ||||||||||||||| | |||||| |||||||||||||||||||| Sbjct: 24842 gagaacacatttgccatagcaattggtgctcttagtctcgtactctttgctcagctgatt 24901 Query: 85 ggcaaaatgcag 96 ||||| |||||| Sbjct: 24902 ggcaatatgcag 24913 Score = 56.0 bits (28), Expect = 5e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 118 aaaaggctcgaagagtggaggttgaggcagcgggacatggaggagtggatgagacatcac 177 |||||||| |||||||||||| | |||| | || ||||||||||||||||||||||| Sbjct: 25252 aaaaggcttgaagagtggaggctccggcaaagagatatggaggagtggatgagacatcat 25311 Query: 178 cggctccc 185 | |||||| Sbjct: 25312 cagctccc 25319
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 44.1 bits (22), Expect = 0.18 Identities = 25/26 (96%) Strand = Plus / Minus Query: 188 ccgaccttcaagaacgtgtccagcgg 213 ||||||||||||||| |||||||||| Sbjct: 5338144 ccgaccttcaagaacctgtccagcgg 5338119
>ref|NM_119182.2| Arabidopsis thaliana ATCNGC17; calmodulin binding / cyclic nucleotide binding / ion channel AT4G30360 (ATCNGC17) mRNA, complete cds Length = 2625 Score = 42.1 bits (21), Expect = 0.72 Identities = 39/45 (86%) Strand = Plus / Plus Query: 67 ctctttgctcagctgattggcaaaatgcagacatacctgcaatct 111 |||||||| || || ||||| || ||||||||||| ||||||||| Sbjct: 1384 ctctttgcccatctcattgggaatatgcagacatatctgcaatct 1428
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 42.1 bits (21), Expect = 0.72 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 ggcaaaatgcagacatacctg 105 ||||||||||||||||||||| Sbjct: 2819801 ggcaaaatgcagacatacctg 2819781
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 42.1 bits (21), Expect = 0.72 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 ggcaaaatgcagacatacctg 105 ||||||||||||||||||||| Sbjct: 2755984 ggcaaaatgcagacatacctg 2755964
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 42.1 bits (21), Expect = 0.72 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 ggcaaaatgcagacatacctg 105 ||||||||||||||||||||| Sbjct: 2922210 ggcaaaatgcagacatacctg 2922190
>gb|AY124000.1| Arabidopsis thaliana AT4g30360/F17I23_300 mRNA, complete cds Length = 2625 Score = 42.1 bits (21), Expect = 0.72 Identities = 39/45 (86%) Strand = Plus / Plus Query: 67 ctctttgctcagctgattggcaaaatgcagacatacctgcaatct 111 |||||||| || || ||||| || ||||||||||| ||||||||| Sbjct: 1384 ctctttgcccatctcattgggaatatgcagacatatctgcaatct 1428
>emb|BX842703.3| Zebrafish DNA sequence from clone DKEY-13F9 in linkage group 21, complete sequence Length = 208780 Score = 42.1 bits (21), Expect = 0.72 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 aacatatttgctatagcaatt 48 ||||||||||||||||||||| Sbjct: 120556 aacatatttgctatagcaatt 120576
>gb|BT002284.1| Arabidopsis thaliana At4g30360/F17I23_300 mRNA, complete cds Length = 2163 Score = 42.1 bits (21), Expect = 0.72 Identities = 39/45 (86%) Strand = Plus / Plus Query: 67 ctctttgctcagctgattggcaaaatgcagacatacctgcaatct 111 |||||||| || || ||||| || ||||||||||| ||||||||| Sbjct: 1168 ctctttgcccatctcattgggaatatgcagacatatctgcaatct 1212
>emb|AL606934.12| Mouse DNA sequence from clone RP23-138L21 on chromosome 4, complete sequence Length = 211580 Score = 42.1 bits (21), Expect = 0.72 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 aagagtggaggttgaggcagc 148 ||||||||||||||||||||| Sbjct: 186809 aagagtggaggttgaggcagc 186789
>emb|BX569690.1| Synechococcus sp. WH8102 complete genome; segment 2/7 Length = 349652 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 acttattgtcgagaacatat 34 |||||||||||||||||||| Sbjct: 107498 acttattgtcgagaacatat 107479
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 2.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 ctctttgctcagctgattggcaaa 90 |||||||| ||||||||||||||| Sbjct: 3024523 ctctttgcacagctgattggcaaa 3024546
>emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in linkage group 9, complete sequence Length = 192039 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 aaatgcagacatacctgcaa 108 |||||||||||||||||||| Sbjct: 185322 aaatgcagacatacctgcaa 185303 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,699,622 Number of Sequences: 3902068 Number of extensions: 1699622 Number of successful extensions: 144385 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 144208 Number of HSP's gapped (non-prelim): 170 length of query: 223 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 201 effective length of database: 17,147,199,772 effective search space: 3446587154172 effective search space used: 3446587154172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)