Clone Information

BLAST Search Result

Clone Name	baet79d02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_479571.1\| Oryza sativa (japonica cultivar-group), mRNA	174	9e-41
2	dbj\|AK103324.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	174	9e-41
3	gb\|BT016442.1\| Zea mays clone Contig275 mRNA sequence	157	2e-35
4	gb\|BT018000.1\| Zea mays clone EL01N0526G03.c mRNA sequence	153	3e-34
5	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	141	1e-30
6	dbj\|AP005167.4\| Oryza sativa (japonica cultivar-group) genomic D...	141	1e-30
7	emb\|Y08987.1\|OSR40G2 O.sativa osr40g2 gene	141	1e-30
8	gb\|BT017376.1\| Zea mays clone EL01N0325G07.c mRNA sequence	90	4e-15
9	gb\|BT018086.1\| Zea mays clone EL01N0552C09.c mRNA sequence	60	4e-06
10	ref\|NM_187532.1\| Oryza sativa (japonica cultivar-group), predic...	58	1e-05
11	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	58	1e-05
12	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	58	1e-05
13	emb\|X95402.1\|OSOSR40C1 O.sativa mRNA for novel protein, osr40c1	58	1e-05
14	dbj\|AK069815.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	58	1e-05
15	gb\|AC126222.2\| Oryza sativa (japonica cultivar-group) chromosome...	58	1e-05
16	gb\|BT016654.1\| Zea mays clone Contig487 mRNA sequence	56	6e-05
17	gb\|DQ022951.1\| Triticum aestivum stress responsive protein mRNA,...	56	6e-05
18	ref\|XM_479573.1\| Oryza sativa (japonica cultivar-group), mRNA	50	0.004
19	emb\|Y08988.1\|OSR40G3 O.sativa osr40g3 gene	50	0.004
20	dbj\|AK072989.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	50	0.004
21	ref\|XM_479572.1\| Oryza sativa (japonica cultivar-group), mRNA	46	0.056
22	dbj\|AK060899.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.056
23	gb\|AY291460.1\| Shuttle vector pNG168, complete sequence	44	0.22
24	gb\|L26978.1\|HLFINSVECB Shuttle vector pMLH3, complete sequence	44	0.22
25	gb\|AY596297.1\| Haloarcula marismortui ATCC 43049 chromosome I, c...	44	0.22
26	gb\|M83531.1\|HLFHMGA H.volcanii 3-hydroxy-3-methylglutaryl coenzy...	44	0.22
27	emb\|AL939108.1\|SCO939108 Streptomyces coelicolor A3(2) complete ...	42	0.87
28	gb\|CP000250.1\| Rhodopseudomonas palustris HaA2, complete genome	42	0.87
29	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	42	0.87
30	gb\|AY724720.1\| Mycobacterium mucogenicum strain ATCC 49650 prepr...	42	0.87
31	gb\|CP000031.1\| Silicibacter pomeroyi DSS-3, complete genome	40	3.5
32	ref\|XM_463443.1\| Oryza sativa (japonica cultivar-group), predic...	40	3.5
33	gb\|BC035897.1\| Homo sapiens jumonji domain containing 3, mRNA (c...	40	3.5
34	emb\|AL596125.27\| Mouse DNA sequence from clone RP23-5O23 on chro...	40	3.5
35	emb\|CR381576.10\| Zebrafish DNA sequence from clone DKEY-245F17 i...	40	3.5
36	gb\|AC104581.22\| Homo sapiens chromosome 17, clone RP11-1099M24, ...	40	3.5
37	gb\|AF459424.1\| Rhodococcus sp. NCIMB 9784 flavin-type hydroxylas...	40	3.5
38	ref\|XM_945439.1\| PREDICTED: Homo sapiens jumonji domain containi...	40	3.5
39	ref\|XM_941783.1\| PREDICTED: Homo sapiens jumonji domain containi...	40	3.5
40	ref\|XM_933967.1\| PREDICTED: Homo sapiens jumonji domain containi...	40	3.5
41	ref\|XM_043272.10\| PREDICTED: Homo sapiens jumonji domain contain...	40	3.5
42	ref\|NM_001017426.1\| Mus musculus jumonji domain containing 3 (Jm...	40	3.5
43	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.5
44	dbj\|AB103463.1\| Streptomyces sp. AM-7161 medermycin biosynthetic...	40	3.5
45	dbj\|AP003274.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.5
46	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	3.5
47	dbj\|AK109619.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	3.5
48	dbj\|AK105550.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	3.5
49	emb\|AL928980.7\| Zebrafish DNA sequence from clone DKEY-77M16 in ...	40	3.5
50	dbj\|AB002344.2\| Human mRNA for KIAA0346 gene, partial cds	40	3.5
51	dbj\|AP003256.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	3.5

>ref|XM_479571.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1511

 Score =  174 bits (88), Expect = 9e-41
 Identities = 170/196 (86%), Gaps = 6/196 (3%)
 Strand = Plus / Plus

                                                                       
Query: 60  aagatgttcgggttcgggcaccaccacaaggaccaggcgccggcggcg---tccggcccc 116
           |||||||| ||||||||||||||||||||   |||||| |||||||||   || | ||| 
Sbjct: 78  aagatgtttgggttcgggcaccaccacaa---ccaggcaccggcggcgccgtcggacccg 134

                                                                       
Query: 117 aaccagatcttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgac 176
           ||||||||||||||||||| |||||| |||  |||| ||||||||||| |||||||||||
Sbjct: 135 aaccagatcttcaagatcttctgccgcgccaacgagaactactgcctcaccgtccgcgac 194

                                                                       
Query: 177 ggcgaggtcgtgctcgcccccgtcaaccccaaggacgagacccagcactggctcaaggac 236
            |||  ||||| |||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 195 agcgccgtcgtcctcgcccccgtcaaccccaaggacgagcaccagcactggttcaaggac 254

                           
Query: 237 atgcgcttcagcacca 252
           ||| | ||||||||||
Sbjct: 255 atgaggttcagcacca 270



 Score = 46.1 bits (23), Expect = 0.056
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 149 cgaggactactgcctcgccgtccgcgacggc 179
           |||||||||||||||| |||||||| |||||
Sbjct: 686 cgaggactactgcctcaccgtccgcaacggc 716

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>dbj|AK103324.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125K07, full
           insert sequence
          Length = 1512

 Score =  174 bits (88), Expect = 9e-41
 Identities = 170/196 (86%), Gaps = 6/196 (3%)
 Strand = Plus / Plus

                                                                       
Query: 60  aagatgttcgggttcgggcaccaccacaaggaccaggcgccggcggcg---tccggcccc 116
           |||||||| ||||||||||||||||||||   |||||| |||||||||   || | ||| 
Sbjct: 78  aagatgtttgggttcgggcaccaccacaa---ccaggcaccggcggcgccgtcggacccg 134

                                                                       
Query: 117 aaccagatcttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgac 176
           ||||||||||||||||||| |||||| |||  |||| ||||||||||| |||||||||||
Sbjct: 135 aaccagatcttcaagatcttctgccgcgccaacgagaactactgcctcaccgtccgcgac 194

                                                                       
Query: 177 ggcgaggtcgtgctcgcccccgtcaaccccaaggacgagacccagcactggctcaaggac 236
            |||  ||||| |||||||||||||||||||||||||||  |||||||||| ||||||||
Sbjct: 195 agcgccgtcgtcctcgcccccgtcaaccccaaggacgagcaccagcactggttcaaggac 254

                           
Query: 237 atgcgcttcagcacca 252
           ||| | ||||||||||
Sbjct: 255 atgaggttcagcacca 270



 Score = 46.1 bits (23), Expect = 0.056
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 149 cgaggactactgcctcgccgtccgcgacggc 179
           |||||||||||||||| |||||||| |||||
Sbjct: 686 cgaggactactgcctcaccgtccgcaacggc 716

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>gb|BT016442.1| Zea mays clone Contig275 mRNA sequence
          Length = 1443

 Score =  157 bits (79), Expect = 2e-35
 Identities = 142/163 (87%)
 Strand = Plus / Plus

                                                                       
Query: 103 cggcgtccggccccaaccagatcttcaagatctactgccgggcctccgaggactactgcc 162
           ||||||| |||||||||||| | |||||||||| |||||| |||  |||| |||||||||
Sbjct: 99  cggcgtcgggccccaaccaggtgttcaagatcttctgccgcgccaacgagaactactgcc 158

                                                                       
Query: 163 tcgccgtccgcgacggcgaggtcgtgctcgcccccgtcaaccccaaggacgagacccagc 222
           | ||||||||||||||||  |||||||| ||||| |||||||||||||||||   |||||
Sbjct: 159 tggccgtccgcgacggcgccgtcgtgctggccccggtcaaccccaaggacgaccaccagc 218

                                                      
Query: 223 actggctcaaggacatgcgcttcagcaccaccgtcaaggacga 265
           |||||  ||||||||||||||||||||||   |||||||||||
Sbjct: 219 actggtacaaggacatgcgcttcagcacccgggtcaaggacga 261



 Score = 46.1 bits (23), Expect = 0.056
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                      
Query: 209 ggacgagacccagcactggctcaaggacatgcgcttcagcacc 251
           |||||||  |||||||||| ||||||||||||||  |||||||
Sbjct: 703 ggacgagtaccagcactggttcaaggacatgcgccacagcacc 745

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>gb|BT018000.1| Zea mays clone EL01N0526G03.c mRNA sequence
          Length = 842

 Score =  153 bits (77), Expect = 3e-34
 Identities = 131/149 (87%)
 Strand = Plus / Plus

                                                                       
Query: 103 cggcgtccggccccaaccagatcttcaagatctactgccgggcctccgaggactactgcc 162
           ||||||| |||||||||||| | |||||||||| |||||| |||  |||| |||||||||
Sbjct: 31  cggcgtcgggccccaaccaggtgttcaagatcttctgccgcgccaacgagaactactgcc 90

                                                                       
Query: 163 tcgccgtccgcgacggcgaggtcgtgctcgcccccgtcaaccccaaggacgagacccagc 222
           | ||||||||||||||||  |||||||| ||||| |||||||||||||||||   |||||
Sbjct: 91  tggccgtccgcgacggcgccgtcgtgctggccccggtcaaccccaaggacgaccaccagc 150

                                        
Query: 223 actggctcaaggacatgcgcttcagcacc 251
           |||||  ||||||||||||||||||||||
Sbjct: 151 actggtacaaggacatgcgcttcagcacc 179

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  141 bits (71), Expect = 1e-30
 Identities = 138/159 (86%), Gaps = 6/159 (3%)
 Strand = Plus / Plus

                                                                            
Query: 60       aagatgttcgggttcgggcaccaccacaaggaccaggcgccggcggcg---tccggcccc 116
                |||||||| ||||||||||||||||||||   |||||| |||||||||   || | ||| 
Sbjct: 28950715 aagatgtttgggttcgggcaccaccacaa---ccaggcaccggcggcgccgtcggacccg 28950771

                                                                            
Query: 117      aaccagatcttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgac 176
                ||||||||||||||||||| |||||| |||  |||| ||||||||||| |||||||||||
Sbjct: 28950772 aaccagatcttcaagatcttctgccgcgccaacgagaactactgcctcaccgtccgcgac 28950831

                                                       
Query: 177      ggcgaggtcgtgctcgcccccgtcaaccccaaggacgag 215
                 |||  ||||| |||||||||||||||||||||||||||
Sbjct: 28950832 agcgccgtcgtcctcgcccccgtcaaccccaaggacgag 28950870



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 201      aaccccaaggacgagacccagcactggctcaaggacatgcgcttcagcaccaccgtcaag 260
                |||||||||||||||  |||||| ||| ||||||||||| | |  ||||||| | |||||
Sbjct: 28955632 aaccccaaggacgagtaccagcattggatcaaggacatgaggtggagcaccagcatcaag 28955691

                     
Query: 261      gacga 265
                |||||
Sbjct: 28955692 gacga 28955696



 Score = 46.1 bits (23), Expect = 0.056
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 149      cgaggactactgcctcgccgtccgcgacggc 179
                |||||||||||||||| |||||||| |||||
Sbjct: 28951522 cgaggactactgcctcaccgtccgcaacggc 28951552



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 219      cagcactggctcaaggacatgcgcttcagcacca 252
                ||||||||| ||||||||||| | ||||||||||
Sbjct: 28950966 cagcactggttcaaggacatgaggttcagcacca 28950999

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>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0060O17
          Length = 180015

 Score =  141 bits (71), Expect = 1e-30
 Identities = 138/159 (86%), Gaps = 6/159 (3%)
 Strand = Plus / Plus

                                                                         
Query: 60    aagatgttcgggttcgggcaccaccacaaggaccaggcgccggcggcg---tccggcccc 116
             |||||||| ||||||||||||||||||||   |||||| |||||||||   || | ||| 
Sbjct: 68252 aagatgtttgggttcgggcaccaccacaa---ccaggcaccggcggcgccgtcggacccg 68308

                                                                         
Query: 117   aaccagatcttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgac 176
             ||||||||||||||||||| |||||| |||  |||| ||||||||||| |||||||||||
Sbjct: 68309 aaccagatcttcaagatcttctgccgcgccaacgagaactactgcctcaccgtccgcgac 68368

                                                    
Query: 177   ggcgaggtcgtgctcgcccccgtcaaccccaaggacgag 215
              |||  ||||| |||||||||||||||||||||||||||
Sbjct: 68369 agcgccgtcgtcctcgcccccgtcaaccccaaggacgag 68407



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                         
Query: 201   aaccccaaggacgagacccagcactggctcaaggacatgcgcttcagcaccaccgtcaag 260
             |||||||||||||||  |||||| ||| ||||||||||| | |  ||||||| | |||||
Sbjct: 73169 aaccccaaggacgagtaccagcattggatcaaggacatgaggtggagcaccagcatcaag 73228

                  
Query: 261   gacga 265
             |||||
Sbjct: 73229 gacga 73233



 Score = 46.1 bits (23), Expect = 0.056
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 149   cgaggactactgcctcgccgtccgcgacggc 179
             |||||||||||||||| |||||||| |||||
Sbjct: 69059 cgaggactactgcctcaccgtccgcaacggc 69089



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 219   cagcactggctcaaggacatgcgcttcagcacca 252
             ||||||||| ||||||||||| | ||||||||||
Sbjct: 68503 cagcactggttcaaggacatgaggttcagcacca 68536

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>emb|Y08987.1|OSR40G2 O.sativa osr40g2 gene
          Length = 2101

 Score =  141 bits (71), Expect = 1e-30
 Identities = 138/159 (86%), Gaps = 6/159 (3%)
 Strand = Plus / Plus

                                                                       
Query: 60  aagatgttcgggttcgggcaccaccacaaggaccaggcgccggcggcg---tccggcccc 116
           |||||||| ||||||||||||||||||||   |||||| |||||||||   || | ||| 
Sbjct: 642 aagatgtttgggttcgggcaccaccacaa---ccaggcaccggcggcgccgtcggacccg 698

                                                                       
Query: 117 aaccagatcttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgac 176
           ||||||||||||||||||| |||||| |||  |||| ||||||||||| |||||||||||
Sbjct: 699 aaccagatcttcaagatcttctgccgcgccaacgagaactactgcctcaccgtccgcgac 758

                                                  
Query: 177 ggcgaggtcgtgctcgcccccgtcaaccccaaggacgag 215
            |||  ||||| |||||||||||||||||||||||||||
Sbjct: 759 agcgccgtcgtcctcgcccccgtcaaccccaaggacgag 797



 Score = 46.1 bits (23), Expect = 0.056
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 149  cgaggactactgcctcgccgtccgcgacggc 179
            |||||||||||||||| |||||||| |||||
Sbjct: 1449 cgaggactactgcctcaccgtccgcaacggc 1479



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 219 cagcactggctcaaggacatgcgcttcagcacca 252
           ||||||||| ||||||||||| | ||||||||||
Sbjct: 893 cagcactggttcaaggacatgaggttcagcacca 926

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>gb|BT017376.1| Zea mays clone EL01N0325G07.c mRNA sequence
          Length = 778

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 117/141 (82%)
 Strand = Plus / Plus

                                                                       
Query: 125 cttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgacggcgaggt 184
           ||||||||||| ||||  ||||  |||||  ||||||||| |||||||||||||| | ||
Sbjct: 151 cttcaagatcttctgcaaggccgacgaggggtactgcctcaccgtccgcgacggcaacgt 210

                                                                       
Query: 185 cgtgctcgcccccgtcaaccccaaggacgagacccagcactggctcaaggacatgcgctt 244
            ||||| ||||||| ||||||    ||||||  ||||||||||  |||||||||||||||
Sbjct: 211 ggtgctggcccccgccaacccgcgcgacgagcaccagcactggtacaaggacatgcgctt 270

                                
Query: 245 cagcaccaccgtcaaggacga 265
           |||||||   |||||||||||
Sbjct: 271 cagcacccaggtcaaggacga 291



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 59  caagatgttcgggttcgggcaccac 83
           |||||||||||| ||||||||||||
Sbjct: 76  caagatgttcggcttcgggcaccac 100

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>gb|BT018086.1| Zea mays clone EL01N0552C09.c mRNA sequence
          Length = 666

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 63/74 (85%)
 Strand = Plus / Plus

                                                                       
Query: 168 gtccgcgacggcgaggtcgtgctcgcccccgtcaaccccaaggacgagacccagcactgg 227
           |||||||||||  |||| ||||| || || |  |||||||||||||||  ||||||||||
Sbjct: 29  gtccgcgacgggaaggtggtgctggcgccggcgaaccccaaggacgagtaccagcactgg 88

                         
Query: 228 ctcaaggacatgcg 241
            |||||||||||||
Sbjct: 89  atcaaggacatgcg 102

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>ref|NM_187532.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1122

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 113/141 (80%)
 Strand = Plus / Plus

                                                                       
Query: 125 cttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgacggcgaggt 184
           ||||||||||| |||||| |||  |||||  |||||| ||||||| ||||| ||  | ||
Sbjct: 90  cttcaagatcttctgccgcgccgacgaggggtactgcgtcgccgtgcgcgaggggaacgt 149

                                                                       
Query: 185 cgtgctcgcccccgtcaaccccaaggacgagacccagcactggctcaaggacatgcgctt 244
           ||| ||||||||   ||||||    ||||||  ||||||||||  |||||||||||||||
Sbjct: 150 cgtcctcgccccgaccaacccgcgcgacgagcaccagcactggtacaaggacatgcgctt 209

                                
Query: 245 cagcaccaccgtcaaggacga 265
           |||| |||   ||||||||||
Sbjct: 210 cagcgccaagatcaaggacga 230

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 113/141 (80%)
 Strand = Plus / Minus

                                                                            
Query: 125      cttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgacggcgaggt 184
                ||||||||||| |||||| |||  |||||  |||||| ||||||| ||||| ||  | ||
Sbjct: 11932527 cttcaagatcttctgccgcgccgacgaggggtactgcgtcgccgtgcgcgaggggaacgt 11932468

                                                                            
Query: 185      cgtgctcgcccccgtcaaccccaaggacgagacccagcactggctcaaggacatgcgctt 244
                ||| ||||||||   ||||||    ||||||  ||||||||||  |||||||||||||||
Sbjct: 11932467 cgtcctcgccccgaccaacccgcgcgacgagcaccagcactggtacaaggacatgcgctt 11932408

                                     
Query: 245      cagcaccaccgtcaaggacga 265
                |||| |||   ||||||||||
Sbjct: 11932407 cagcgccaagatcaaggacga 11932387



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 59       caagatgttcgggttcgggcaccac 83
                |||||||||||| ||||||||||||
Sbjct: 11932620 caagatgttcggcttcgggcaccac 11932596

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 113/141 (80%)
 Strand = Plus / Minus

                                                                            
Query: 125      cttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgacggcgaggt 184
                ||||||||||| |||||| |||  |||||  |||||| ||||||| ||||| ||  | ||
Sbjct: 11929290 cttcaagatcttctgccgcgccgacgaggggtactgcgtcgccgtgcgcgaggggaacgt 11929231

                                                                            
Query: 185      cgtgctcgcccccgtcaaccccaaggacgagacccagcactggctcaaggacatgcgctt 244
                ||| ||||||||   ||||||    ||||||  ||||||||||  |||||||||||||||
Sbjct: 11929230 cgtcctcgccccgaccaacccgcgcgacgagcaccagcactggtacaaggacatgcgctt 11929171

                                     
Query: 245      cagcaccaccgtcaaggacga 265
                |||| |||   ||||||||||
Sbjct: 11929170 cagcgccaagatcaaggacga 11929150



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 59       caagatgttcgggttcgggcaccac 83
                |||||||||||| ||||||||||||
Sbjct: 11929383 caagatgttcggcttcgggcaccac 11929359

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>emb|X95402.1|OSOSR40C1 O.sativa mRNA for novel protein, osr40c1
          Length = 1458

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 113/141 (80%)
 Strand = Plus / Plus

                                                                       
Query: 125 cttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgacggcgaggt 184
           ||||||||||| |||||| |||  |||||  |||||| ||||||| ||||| ||  | ||
Sbjct: 152 cttcaagatcttctgccgcgccgacgaggggtactgcgtcgccgtgcgcgaggggaacgt 211

                                                                       
Query: 185 cgtgctcgcccccgtcaaccccaaggacgagacccagcactggctcaaggacatgcgctt 244
           ||| ||||||||   ||||||    ||||||  ||||||||||  |||||||||||||||
Sbjct: 212 cgtcctcgccccgaccaacccgcgcgacgagcaccagcactggtacaaggacatgcgctt 271

                                
Query: 245 cagcaccaccgtcaaggacga 265
           |||| |||   ||||||||||
Sbjct: 272 cagcgccaagatcaaggacga 292



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 59 caagatgttcgggttcgggcaccac 83
          |||||||||||| ||||||||||||
Sbjct: 59 caagatgttcggcttcgggcaccac 83

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>dbj|AK069815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031K10, full
           insert sequence
          Length = 1765

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 113/141 (80%)
 Strand = Plus / Plus

                                                                       
Query: 125 cttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgacggcgaggt 184
           ||||||||||| |||||| |||  |||||  |||||| ||||||| ||||| ||  | ||
Sbjct: 165 cttcaagatcttctgccgcgccgacgaggggtactgcgtcgccgtgcgcgaggggaacgt 224

                                                                       
Query: 185 cgtgctcgcccccgtcaaccccaaggacgagacccagcactggctcaaggacatgcgctt 244
           ||| ||||||||   ||||||    ||||||  ||||||||||  |||||||||||||||
Sbjct: 225 cgtcctcgccccgaccaacccgcgcgacgagcaccagcactggtacaaggacatgcgctt 284

                                
Query: 245 cagcaccaccgtcaaggacga 265
           |||| |||   ||||||||||
Sbjct: 285 cagcgccaagatcaaggacga 305



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 59 caagatgttcgggttcgggcaccac 83
          |||||||||||| ||||||||||||
Sbjct: 72 caagatgttcggcttcgggcaccac 96

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>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0014I10, complete sequence
          Length = 113946

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 113/141 (80%)
 Strand = Plus / Minus

                                                                         
Query: 125   cttcaagatctactgccgggcctccgaggactactgcctcgccgtccgcgacggcgaggt 184
             ||||||||||| |||||| |||  |||||  |||||| ||||||| ||||| ||  | ||
Sbjct: 33789 cttcaagatcttctgccgcgccgacgaggggtactgcgtcgccgtgcgcgaggggaacgt 33730

                                                                         
Query: 185   cgtgctcgcccccgtcaaccccaaggacgagacccagcactggctcaaggacatgcgctt 244
             ||| ||||||||   ||||||    ||||||  ||||||||||  |||||||||||||||
Sbjct: 33729 cgtcctcgccccgaccaacccgcgcgacgagcaccagcactggtacaaggacatgcgctt 33670

                                  
Query: 245   cagcaccaccgtcaaggacga 265
             |||| |||   ||||||||||
Sbjct: 33669 cagcgccaagatcaaggacga 33649



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 59    caagatgttcgggttcgggcaccac 83
             |||||||||||| ||||||||||||
Sbjct: 33882 caagatgttcggcttcgggcaccac 33858

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>gb|BT016654.1| Zea mays clone Contig487 mRNA sequence
          Length = 905

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 218 ccagcactggctcaaggacatgcgcttcagcaccaccgtcaaggacga 265
           |||||||||| ||||||||||||||  ||||| || ||||||||||||
Sbjct: 202 ccagcactggatcaaggacatgcgccacagcaacagcgtcaaggacga 249

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>gb|DQ022951.1| Triticum aestivum stress responsive protein mRNA, complete cds
          Length = 846

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 82/100 (82%)
 Strand = Plus / Plus

                                                                       
Query: 166 ccgtccgcgacggcgaggtcgtgctcgcccccgtcaaccccaaggacgagacccagcact 225
           |||| ||| ||||| |||| ||||| || || | |||||||||||||||   ||||||||
Sbjct: 198 ccgtgcgcaacggcaaggtggtgctggcgccggccaaccccaaggacgactaccagcact 257

                                                   
Query: 226 ggctcaaggacatgcgcttcagcaccaccgtcaaggacga 265
           || ||||||||||| | |  ||||||| | ||||||||||
Sbjct: 258 ggatcaaggacatgaggtggagcaccagcatcaaggacga 297

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>ref|XM_479573.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 988

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 201 aaccccaaggacgagacccagcactggctcaaggacatgcgcttcagcaccaccgtcaag 260
           |||||||||||||||  |||||| ||| ||||||||||| | |  ||||||| | |||||
Sbjct: 337 aaccccaaggacgagtaccagcattggatcaaggacatgaggtggagcaccagcatcaag 396

                
Query: 261 gacga 265
           |||||
Sbjct: 397 gacga 401

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>emb|Y08988.1|OSR40G3 O.sativa osr40g3 gene
          Length = 1531

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 201 aaccccaaggacgagacccagcactggctcaaggacatgcgcttcagcaccaccgtcaag 260
           |||||||||||||||  |||||| ||| ||||||||||| | |  ||||||| | |||||
Sbjct: 872 aaccccaaggacgagtaccagcattggatcaaggacatgaggtggagcaccagcatcaag 931

                
Query: 261 gacga 265
           |||||
Sbjct: 932 gacga 936

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>dbj|AK072989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145K15, full
           insert sequence
          Length = 987

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                       
Query: 201 aaccccaaggacgagacccagcactggctcaaggacatgcgcttcagcaccaccgtcaag 260
           |||||||||||||||  |||||| ||| ||||||||||| | |  ||||||| | |||||
Sbjct: 336 aaccccaaggacgagtaccagcattggatcaaggacatgaggtggagcaccagcatcaag 395

                
Query: 261 gacga 265
           |||||
Sbjct: 396 gacga 400

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>ref|XM_479572.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1239

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 149 cgaggactactgcctcgccgtccgcgacggc 179
           |||||||||||||||| |||||||| |||||
Sbjct: 471 cgaggactactgcctcaccgtccgcaacggc 501



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 219 cagcactggctcaaggacatgcgcttcagcacca 252
           ||||||||| ||||||||||| | ||||||||||
Sbjct: 22  cagcactggttcaaggacatgaggttcagcacca 55

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>dbj|AK060899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D04, full
           insert sequence
          Length = 1239

 Score = 46.1 bits (23), Expect = 0.056
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 149 cgaggactactgcctcgccgtccgcgacggc 179
           |||||||||||||||| |||||||| |||||
Sbjct: 471 cgaggactactgcctcaccgtccgcaacggc 501



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 219 cagcactggctcaaggacatgcgcttcagcacca 252
           ||||||||| ||||||||||| | ||||||||||
Sbjct: 22  cagcactggttcaaggacatgaggttcagcacca 55

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>gb|AY291460.1| Shuttle vector pNG168, complete sequence
          Length = 8960

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 166  ccgtccgcgacggcgaggtcgt 187
            ||||||||||||||||||||||
Sbjct: 8868 ccgtccgcgacggcgaggtcgt 8889

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>gb|L26978.1|HLFINSVECB Shuttle vector pMLH3, complete sequence
          Length = 11291

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 166  ccgtccgcgacggcgaggtcgt 187
            ||||||||||||||||||||||
Sbjct: 8675 ccgtccgcgacggcgaggtcgt 8696

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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 173     cgacggcgaggtcgtgctcgcc 194
               ||||||||||||||||||||||
Sbjct: 2232615 cgacggcgaggtcgtgctcgcc 2232636

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>gb|M83531.1|HLFHMGA H.volcanii 3-hydroxy-3-methylglutaryl coenzyme A reductase (hmg)
           gene, complete cds
          Length = 1890

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 166 ccgtccgcgacggcgaggtcgt 187
           ||||||||||||||||||||||
Sbjct: 310 ccgtccgcgacggcgaggtcgt 289

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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 160    gcctcgccgtccgcgacggcgaggt 184
              ||||||||||||||| |||||||||
Sbjct: 164567 gcctcgccgtccgcgtcggcgaggt 164543

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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 170     ccgcgacggcgaggtcgtgctcgcc 194
               |||||||||||| ||||||||||||
Sbjct: 5220909 ccgcgacggcgacgtcgtgctcgcc 5220933

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 234    gacatgcgcttcagcaccaccgtca 258
              ||||| |||||||||||||||||||
Sbjct: 825719 gacatccgcttcagcaccaccgtca 825695

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>gb|AY724720.1| Mycobacterium mucogenicum strain ATCC 49650 preprotein translocase
           SecA1 (secA1) gene, partial cds
          Length = 700

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cgtccgcgacggcgaggtcgt 187
           |||||||||||||||||||||
Sbjct: 484 cgtccgcgacggcgaggtcgt 504

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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   cgcgacggcgaggtcgtgct 190
             ||||||||||||||||||||
Sbjct: 58762 cgcgacggcgaggtcgtgct 58743

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>ref|XM_463443.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1725

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ggcgccggcggcgtccggcc 114
           ||||||||||||||||||||
Sbjct: 454 ggcgccggcggcgtccggcc 473

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>gb|BC035897.1| Homo sapiens jumonji domain containing 3, mRNA (cDNA clone
           IMAGE:5240292), with apparent retained intron
          Length = 1864

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 84  cacaaggaccaggcgccggcggcg 107
           |||||||||||||| |||||||||
Sbjct: 842 cacaaggaccaggctccggcggcg 865

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>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the
             Chd3 gene for chromodomain helicase DNA binding protein 3,
             five novel genes, the 3' end of the gene for a novel
             protein similar to dynein and four CpG islands, complete
             sequence
          Length = 165212

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    cacaaggaccaggcgccggcggcg 107
             |||||||||||||| |||||||||
Sbjct: 56882 cacaaggaccaggctccggcggcg 56859

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>emb|CR381576.10| Zebrafish DNA sequence from clone DKEY-245F17 in linkage group 17,
             complete sequence
          Length = 185749

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    cagctccaaccagtctagcc 34
             ||||||||||||||||||||
Sbjct: 88254 cagctccaaccagtctagcc 88273

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>gb|AC104581.22| Homo sapiens chromosome 17, clone RP11-1099M24, complete sequence
          Length = 187718

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    cacaaggaccaggcgccggcggcg 107
             |||||||||||||| |||||||||
Sbjct: 17042 cacaaggaccaggctccggcggcg 17065

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>gb|AF459424.1| Rhodococcus sp. NCIMB 9784 flavin-type hydroxylase and cytochrome
            P450 RhF (P450RhF) genes, complete cds
          Length = 4411

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 163  tcgccgtccgcgacggcgaggtcg 186
            ||||||||| ||||||||||||||
Sbjct: 3948 tcgccgtcctcgacggcgaggtcg 3971

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>ref|XM_945439.1| PREDICTED: Homo sapiens jumonji domain containing 3, transcript
            variant 4 (JMJD3), mRNA
          Length = 4757

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   cacaaggaccaggcgccggcggcg 107
            |||||||||||||| |||||||||
Sbjct: 3765 cacaaggaccaggctccggcggcg 3788

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>ref|XM_941783.1| PREDICTED: Homo sapiens jumonji domain containing 3, transcript
            variant 3 (JMJD3), mRNA
          Length = 6701

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   cacaaggaccaggcgccggcggcg 107
            |||||||||||||| |||||||||
Sbjct: 5709 cacaaggaccaggctccggcggcg 5732

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>ref|XM_933967.1| PREDICTED: Homo sapiens jumonji domain containing 3, transcript
            variant 2 (JMJD3), mRNA
          Length = 4756

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   cacaaggaccaggcgccggcggcg 107
            |||||||||||||| |||||||||
Sbjct: 3765 cacaaggaccaggctccggcggcg 3788

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>ref|XM_043272.10| PREDICTED: Homo sapiens jumonji domain containing 3, transcript
            variant 1 (JMJD3), mRNA
          Length = 6694

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   cacaaggaccaggcgccggcggcg 107
            |||||||||||||| |||||||||
Sbjct: 5703 cacaaggaccaggctccggcggcg 5726

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>ref|NM_001017426.1| Mus musculus jumonji domain containing 3 (Jmjd3), mRNA
          Length = 6654

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   cacaaggaccaggcgccggcggcg 107
            |||||||||||||| |||||||||
Sbjct: 5619 cacaaggaccaggctccggcggcg 5642

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 95       ggcgccggcggcgtccggcc 114
                ||||||||||||||||||||
Sbjct: 32027456 ggcgccggcggcgtccggcc 32027437

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>dbj|AB103463.1| Streptomyces sp. AM-7161 medermycin biosynthetic gene cluster (med-ORF1
             - 30) and ORF P - Z , partial and complete cds
          Length = 36202

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ggcgccggcggcgtccggcc 114
             ||||||||||||||||||||
Sbjct: 10201 ggcgccggcggcgtccggcc 10220

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>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0512C01
          Length = 176261

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    ggcgccggcggcgtccggcc 114
             ||||||||||||||||||||
Sbjct: 69270 ggcgccggcggcgtccggcc 69251

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    cgacggcgaggtcgtgctcg 192
              ||||||||||||||||||||
Sbjct: 740437 cgacggcgaggtcgtgctcg 740456

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>dbj|AK109619.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-A03, full
            insert sequence
          Length = 2768

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   ggcgccggcggcgtccggcc 114
            ||||||||||||||||||||
Sbjct: 1957 ggcgccggcggcgtccggcc 1938

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>dbj|AK105550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A10, full
           insert sequence
          Length = 1834

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 95  ggcgccggcggcgtccggcc 114
           ||||||||||||||||||||
Sbjct: 462 ggcgccggcggcgtccggcc 481

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>emb|AL928980.7| Zebrafish DNA sequence from clone DKEY-77M16 in linkage group 11,
             complete sequence
          Length = 167387

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    agctccaaccagtctagccg 35
             ||||||||||||||||||||
Sbjct: 57110 agctccaaccagtctagccg 57129

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>dbj|AB002344.2| Human mRNA for KIAA0346 gene, partial cds
          Length = 6698

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 84   cacaaggaccaggcgccggcggcg 107
            |||||||||||||| |||||||||
Sbjct: 5714 cacaaggaccaggctccggcggcg 5737

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>dbj|AP003256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0460E08
          Length = 170021

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     ggcgccggcggcgtccggcc 114
              ||||||||||||||||||||
Sbjct: 124183 ggcgccggcggcgtccggcc 124164


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,848,556
Number of Sequences: 3902068
Number of extensions: 1848556
Number of successful extensions: 35607
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35082
Number of HSP's gapped (non-prelim): 513
length of query: 266
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 244
effective length of database: 17,147,199,772
effective search space: 4183916744368
effective search space used: 4183916744368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result