>ALU2_HUMAN (P39189) Alu subfamily SB sequence contamination warning entry|
Length = 587
Score = 75.1 bits (183), Expect = 4e-14
Identities = 35/45 (77%), Positives = 35/45 (77%)
Frame = +3
Query: 138 KNRIVTGMEAHTCNPSTLGGRGGRITRSGDRDHPG*HGETSSLLK 272
K G AH CNPSTLGGRGGRITRSGDRDHPG HGET SLLK
Sbjct: 193 KKXXXPGAVAHACNPSTLGGRGGRITRSGDRDHPGXHGETPSLLK 237
Score = 71.6 bits (174), Expect = 5e-13
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSRSPDLVIRPPRPPKVLGLQV*ASMP 155
FSRD VSPC PGWSRSPDLVIRPPRPPKVLGLQ A+ P
Sbjct: 548 FSRDGVSPCXPGWSRSPDLVIRPPRPPKVLGLQAXATAP 586
Score = 62.0 bits (149), Expect = 4e-10
Identities = 29/37 (78%), Positives = 29/37 (78%)
Frame = -1
Query: 270 LAETRFHHVSQGGLDLLIS*SAHLGLPKCWDYRCEPP 160
L ET FH VSQ GLDLL S SA LGLPKCWDYR EPP
Sbjct: 352 LVETGFHRVSQDGLDLLTSXSARLGLPKCWDYRREPP 388
Score = 60.5 bits (145), Expect = 1e-09
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 166 LTPVIPALWEAEVGGSRDQEIETTLANMVKPRL 264
LTPVIPALWEAE GGSR QEIET LAN VKPRL
Sbjct: 6 LTPVIPALWEAEAGGSRGQEIETILANTVKPRL 38
Score = 58.2 bits (139), Expect = 5e-09
Identities = 28/37 (75%), Positives = 29/37 (78%)
Frame = +2
Query: 161 GGSHL*SQHFGRPRWADHEIRRSRPPWLTW*NLVSAK 271
GGS L SQHFGRPR ADHE+RRSRP WLT N VS K
Sbjct: 103 GGSRLXSQHFGRPRRADHEVRRSRPSWLTRXNPVSTK 139
Score = 56.2 bits (134), Expect = 2e-08
Identities = 30/39 (76%), Positives = 32/39 (82%)
Frame = -2
Query: 272 F*QRRGFTMLARVVSIS*SRDPPTSASQSAGITGVSLHA 156
F RRGFT+LAR+VSIS RDPP SASQSAGITGVS A
Sbjct: 450 FXXRRGFTVLARMVSISXPRDPPASASQSAGITGVSHRA 488
Score = 31.2 bits (69), Expect = 0.72
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSR-----------SPDLVIRPPRPPKVLGLQV*ASMPVTILF 140
F D VS C PGWS S I P+PP+ LGLQ A+ P L+
Sbjct: 395 FFXDGVSLCRPGWSAVARSRLTASSASRVHAILLPQPPEXLGLQAPATTPGXFLY 449
Score = 27.7 bits (60), Expect = 7.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 148 LSQAWRLTPVIPALWEAEVGGSRD 219
+S+AW PV+PA EAE G R+
Sbjct: 143 ISRAWWRAPVVPATREAEAGEWRE 166
>ALU3_HUMAN (P39190) Alu subfamily SB1 sequence contamination warning entry|
Length = 587
Score = 72.4 bits (176), Expect = 3e-13
Identities = 34/45 (75%), Positives = 35/45 (77%)
Frame = +3
Query: 138 KNRIVTGMEAHTCNPSTLGGRGGRITRSGDRDHPG*HGETSSLLK 272
K G AH CNPSTLGGRGGRITRSGDRDHPG +GET SLLK
Sbjct: 193 KKXXXPGAVAHACNPSTLGGRGGRITRSGDRDHPGXNGETPSLLK 237
Score = 67.4 bits (163), Expect = 9e-12
Identities = 32/39 (82%), Positives = 33/39 (84%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSRSPDLVIRPPRPPKVLGLQV*ASMP 155
FSRD VSP PGWSRSPDLVIRPPRPPKVLGLQ A+ P
Sbjct: 548 FSRDGVSPFXPGWSRSPDLVIRPPRPPKVLGLQAXATAP 586
Score = 58.5 bits (140), Expect = 4e-09
Identities = 27/37 (72%), Positives = 28/37 (75%)
Frame = -1
Query: 270 LAETRFHHVSQGGLDLLIS*SAHLGLPKCWDYRCEPP 160
L ET FH S+ GLDLL S SA LGLPKCWDYR EPP
Sbjct: 352 LVETGFHRFSRDGLDLLTSXSARLGLPKCWDYRREPP 388
Score = 55.5 bits (132), Expect = 4e-08
Identities = 27/33 (81%), Positives = 27/33 (81%)
Frame = +1
Query: 166 LTPVIPALWEAEVGGSRDQEIETTLANMVKPRL 264
LTPVIPALWEAE GGSR QEIET A VKPRL
Sbjct: 6 LTPVIPALWEAEAGGSRGQEIETIPAKTVKPRL 38
Score = 53.5 bits (127), Expect = 1e-07
Identities = 29/39 (74%), Positives = 31/39 (79%)
Frame = -2
Query: 272 F*QRRGFTMLARVVSIS*SRDPPTSASQSAGITGVSLHA 156
F RRGFT+LA +VSIS RDPP SASQSAGITGVS A
Sbjct: 450 FXXRRGFTVLAGMVSISXPRDPPASASQSAGITGVSHRA 488
Score = 50.4 bits (119), Expect = 1e-06
Identities = 26/37 (70%), Positives = 27/37 (72%)
Frame = +2
Query: 161 GGSHL*SQHFGRPRWADHEIRRSRPPWLTW*NLVSAK 271
GGS L SQHFGRPR ADHE+RRSRP L N VS K
Sbjct: 103 GGSRLXSQHFGRPRRADHEVRRSRPSRLKRXNPVSTK 139
Score = 32.7 bits (73), Expect = 0.25
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSR-----------SPDLVIRPPRPPKVLGLQV*ASMPVTILF 140
F D VS C PGWS S I P+PPK LGLQ A+ P L+
Sbjct: 395 FFXDGVSLCRPGWSAVAGSRLTASSASRVHAILLPQPPKXLGLQAPATTPGXFLY 449
Score = 28.1 bits (61), Expect = 6.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 160 WRLTPVIPALWEAEVGGSRD 219
WR PV+PA WEAE G R+
Sbjct: 148 WR-APVVPATWEAEAGEWRE 166
>ALU5_HUMAN (P39192) Alu subfamily SC sequence contamination warning entry|
Length = 585
Score = 72.0 bits (175), Expect = 4e-13
Identities = 34/45 (75%), Positives = 34/45 (75%)
Frame = +3
Query: 138 KNRIVTGMEAHTCNPSTLGGRGGRITRSGDRDHPG*HGETSSLLK 272
K G AH CNPSTLGGRGGRITRS DRDHPG HGET SLLK
Sbjct: 192 KKXXXPGAVAHACNPSTLGGRGGRITRSRDRDHPGQHGETPSLLK 236
Score = 68.6 bits (166), Expect = 4e-12
Identities = 33/46 (71%), Positives = 35/46 (76%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSRSPDLVIRPPRPPKVLGLQV*ASMPVTILFLK 134
FSRD VSPC PGWSRS DLVIRPPRPPKVLGLQ A+ P F +
Sbjct: 448 FSRDGVSPCWPGWSRSLDLVIRPPRPPKVLGLQAXATAPGXXXFFE 493
Score = 63.5 bits (153), Expect = 1e-10
Identities = 29/37 (78%), Positives = 29/37 (78%)
Frame = -1
Query: 270 LAETRFHHVSQGGLDLLIS*SAHLGLPKCWDYRCEPP 160
L ET FHHV Q GLDLL S SA LGLPKCWDYR EPP
Sbjct: 546 LVETGFHHVGQDGLDLLTSXSARLGLPKCWDYRREPP 582
Score = 62.8 bits (151), Expect = 2e-10
Identities = 30/33 (90%), Positives = 30/33 (90%)
Frame = +1
Query: 166 LTPVIPALWEAEVGGSRDQEIETTLANMVKPRL 264
LTPVIPALWEAE GGSR QEIET LANMVKPRL
Sbjct: 6 LTPVIPALWEAEAGGSRGQEIETILANMVKPRL 38
Score = 59.7 bits (143), Expect = 2e-09
Identities = 27/37 (72%), Positives = 29/37 (78%)
Frame = +2
Query: 161 GGSHL*SQHFGRPRWADHEIRRSRPPWLTW*NLVSAK 271
GGS L SQHFGRPR ADHE++RSRP W TW N VS K
Sbjct: 102 GGSRLXSQHFGRPRRADHEVKRSRPSWPTWXNPVSTK 138
Score = 57.8 bits (138), Expect = 7e-09
Identities = 31/39 (79%), Positives = 32/39 (82%)
Frame = -2
Query: 272 F*QRRGFTMLARVVSIS*SRDPPTSASQSAGITGVSLHA 156
F RRGFTMLAR+VSIS RDPP SASQSAGITGVS A
Sbjct: 350 FXXRRGFTMLARMVSISXPRDPPASASQSAGITGVSHRA 388
>ALU4_HUMAN (P39191) Alu subfamily SB2 sequence contamination warning entry|
Length = 603
Score = 69.3 bits (168), Expect = 2e-12
Identities = 32/46 (69%), Positives = 35/46 (76%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSRSPDLVIRPPRPPKVLGLQV*ASMPVTILFLK 134
FSRD VSPC PGWSRSPDL+I PPRPPKVLGLQ A+ P F +
Sbjct: 463 FSRDGVSPCXPGWSRSPDLMIHPPRPPKVLGLQAXATAPGXXXFFE 508
Score = 66.6 bits (161), Expect = 2e-11
Identities = 32/45 (71%), Positives = 32/45 (71%)
Frame = +3
Query: 138 KNRIVTGMEAHTCNPSTLGGRGGRITRSGDRDHPG*HGETSSLLK 272
K G AH CNPSTLGGRGG I RSGDRDHPG GET SLLK
Sbjct: 198 KKXXXPGAVAHACNPSTLGGRGGWIMRSGDRDHPGXQGETPSLLK 242
Score = 59.3 bits (142), Expect = 2e-09
Identities = 28/37 (75%), Positives = 28/37 (75%)
Frame = -1
Query: 270 LAETRFHHVSQGGLDLLIS*SAHLGLPKCWDYRCEPP 160
L ET FH VSQ GLDLL S S LGLPKCWDYR EPP
Sbjct: 564 LVETGFHLVSQDGLDLLTSXSTRLGLPKCWDYRREPP 600
Score = 58.2 bits (139), Expect = 5e-09
Identities = 28/33 (84%), Positives = 28/33 (84%)
Frame = +1
Query: 166 LTPVIPALWEAEVGGSRDQEIETTLANMVKPRL 264
LTPVIPALWEAE GGS QEIET LAN VKPRL
Sbjct: 6 LTPVIPALWEAEAGGSXGQEIETILANKVKPRL 38
Score = 56.6 bits (135), Expect = 2e-08
Identities = 27/37 (72%), Positives = 28/37 (75%)
Frame = +2
Query: 161 GGSHL*SQHFGRPRWADHEIRRSRPPWLTW*NLVSAK 271
GGS L SQHFGRPR DHE+RRSRP WLT N VS K
Sbjct: 105 GGSRLXSQHFGRPRRVDHEVRRSRPSWLTRXNPVSTK 141
Score = 54.7 bits (130), Expect = 6e-08
Identities = 29/39 (74%), Positives = 31/39 (79%)
Frame = -2
Query: 272 F*QRRGFTMLARVVSIS*SRDPPTSASQSAGITGVSLHA 156
F RRGFT+LAR+VSIS DPP SASQSAGITGVS A
Sbjct: 362 FXXRRGFTLLARMVSISXPHDPPASASQSAGITGVSHRA 400
>ALU7_HUMAN (P39194) Alu subfamily SQ sequence contamination warning entry|
Length = 593
Score = 39.3 bits (90), Expect(2) = 2e-08
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSRSPDL 215
FSRD VSPC PGWSR+PDL
Sbjct: 355 FSRDGVSPCWPGWSRTPDL 373
Score = 37.7 bits (86), Expect(2) = 7e-06
Identities = 17/26 (65%), Positives = 17/26 (65%)
Frame = +3
Query: 138 KNRIVTGMEAHTCNPSTLGGRGGRIT 215
K G AH CNPSTLGGRGG IT
Sbjct: 195 KKXXXPGAVAHACNPSTLGGRGGWIT 220
Score = 37.0 bits (84), Expect(2) = 2e-08
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = -1
Query: 210 SAHLGLPKCWDYRCEPP 160
S LGLPKCWDYR EPP
Sbjct: 376 STRLGLPKCWDYRREPP 392
Score = 35.4 bits (80), Expect(2) = 5e-05
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 166 LTPVIPALWEAEVGGS 213
LTPVIPALWEAE GGS
Sbjct: 6 LTPVIPALWEAEAGGS 21
Score = 35.0 bits (79), Expect(2) = 4e-04
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = -3
Query: 232 SRSPDLVIRPPRPPKVLGLQV*ASMP 155
S S VI PPRPPKVLGLQ A+ P
Sbjct: 567 SNSXPQVIHPPRPPKVLGLQAXATAP 592
Score = 34.3 bits (77), Expect(2) = 5e-05
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = -2
Query: 218 SRDPPTSASQSAGITGVSLHA 156
S DPP SASQSAGITGVS A
Sbjct: 473 SGDPPASASQSAGITGVSHRA 493
Score = 32.7 bits (73), Expect(2) = 2e-05
Identities = 18/28 (64%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +3
Query: 195 GRGGRIT--RSGDRDHPG*HGETSSLLK 272
GR R+ RSG RD PG HGET SLLK
Sbjct: 114 GRPRRVDHLRSGVRDQPGQHGETPSLLK 141
Score = 32.7 bits (73), Expect(2) = 2e-05
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +2
Query: 161 GGSHL*SQHFGRPRWADH 214
GGS L SQHFGRPR DH
Sbjct: 104 GGSRLXSQHFGRPRRVDH 121
Score = 30.0 bits (66), Expect(2) = 5e-05
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -1
Query: 270 LAETRFHHVSQGGLDLLIS 214
L ET FHHV Q GL+LL S
Sbjct: 455 LVETGFHHVGQAGLELLTS 473
Score = 29.6 bits (65), Expect(2) = 7e-06
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 220 QEIETTLANMVKPRL 264
QE ET+LANMVKPRL
Sbjct: 223 QEFETSLANMVKPRL 237
Score = 28.9 bits (63), Expect = 3.6
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSR-----------SPDLVIRPPRPPKVLGLQV*ASMPVTILF 140
F E C PGWS S I P+PP+ LGLQ A+ P L+
Sbjct: 498 FFETEFRSCCPGWSAVARSRLTATSASRVQAILLPQPPEXLGLQAPATTPGXFLY 552
Score = 28.9 bits (63), Expect(2) = 5e-05
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 215 EIRRSRPPWLTW*NLVSAK 271
E+R SRP W TW N VS K
Sbjct: 23 EVRSSRPAWPTWXNPVSTK 41
Score = 28.1 bits (61), Expect = 6.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 148 LSQAWRLTPVIPALWEAEVGGS 213
+S+AW PVIPA EAE G S
Sbjct: 45 ISRAWWRAPVIPATREAEAGES 66
Score = 26.2 bits (56), Expect(2) = 4e-04
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2
Query: 272 F*QRRGFTMLARVVSIS 222
F RRGFTMLAR+VS S
Sbjct: 553 FXXRRGFTMLARLVSNS 569
>ALU6_HUMAN (P39193) Alu subfamily SP sequence contamination warning entry|
Length = 593
Score = 40.8 bits (94), Expect = 0.001
Identities = 18/26 (69%), Positives = 18/26 (69%)
Frame = +3
Query: 138 KNRIVTGMEAHTCNPSTLGGRGGRIT 215
K G AH CNPSTLGGRGGRIT
Sbjct: 195 KKXXXPGAVAHACNPSTLGGRGGRIT 220
Score = 38.5 bits (88), Expect(2) = 5e-08
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -1
Query: 210 SAHLGLPKCWDYRCEPP 160
SA LGLPKCWDYR EPP
Sbjct: 376 SARLGLPKCWDYRREPP 392
Score = 37.0 bits (84), Expect(2) = 9e-04
Identities = 18/26 (69%), Positives = 19/26 (73%)
Frame = -3
Query: 232 SRSPDLVIRPPRPPKVLGLQV*ASMP 155
S S VIRPPRPPKVLGLQ A+ P
Sbjct: 567 SNSRPQVIRPPRPPKVLGLQAXATAP 592
Score = 36.2 bits (82), Expect(2) = 5e-08
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSRSPDL 215
FSRD VSPC GWSR+PDL
Sbjct: 355 FSRDGVSPCWSGWSRTPDL 373
Score = 35.4 bits (80), Expect(2) = 0.009
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 166 LTPVIPALWEAEVGGS 213
LTPVIPALWEAE GGS
Sbjct: 6 LTPVIPALWEAEAGGS 21
Score = 34.3 bits (77), Expect(2) = 0.005
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = -2
Query: 218 SRDPPTSASQSAGITGVSLHA 156
S DPP SASQSAGITGVS A
Sbjct: 473 SGDPPASASQSAGITGVSHRA 493
Score = 34.3 bits (77), Expect(2) = 7e-05
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +2
Query: 161 GGSHL*SQHFGRPRWADH 214
GGS L SQHFGRPR ADH
Sbjct: 104 GGSRLXSQHFGRPRRADH 121
Score = 30.4 bits (67), Expect = 1.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 129 VFFKNRIVTGMEAHTCNPSTLGGRGGRITRSGDRD 233
++ K + G+ AH CNPS GG G RI + + +
Sbjct: 237 LYXKYKNXPGVVAHACNPSYSGGXGRRIAXTREAE 271
Score = 29.6 bits (65), Expect(2) = 7e-05
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +3
Query: 216 RSGDRDHPG*HGETSSLLK 272
RSG RD P HGET SLLK
Sbjct: 123 RSGVRDQPDQHGETPSLLK 141
Score = 28.9 bits (63), Expect = 3.6
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSR-----------SPDLVIRPPRPPKVLGLQV*ASMPVTILF 140
F E C PGWS S I P+PP+ LGLQ A+ P L+
Sbjct: 498 FFETEFRSCCPGWSAMARSRLTATSASRVQAILLPQPPEXLGLQACATTPGXFLY 552
Score = 27.7 bits (60), Expect = 7.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 218 SRDPPTSASQSAGITGVSLHA 156
S D P SAS+ AGITG+ HA
Sbjct: 428 SSDSPASASRVAGITGMRHHA 448
Score = 27.7 bits (60), Expect = 7.9
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 148 LSQAWRLTPVIPALWEAEVGGS 213
+S+AW PVIPA EAE G S
Sbjct: 45 ISRAWWRMPVIPATREAEAGES 66
Score = 23.1 bits (48), Expect(2) = 9e-04
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 272 F*QRRGFTMLARVVSIS 222
F RRGF+ML R+VS S
Sbjct: 553 FXXRRGFSMLVRLVSNS 569
Score = 23.1 bits (48), Expect(2) = 0.005
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1
Query: 270 LAETRFHHVSQGGLDL 223
L ET F HV Q GL+L
Sbjct: 455 LVETGFLHVGQAGLEL 470
Score = 21.2 bits (43), Expect(2) = 0.009
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 215 EIRRSRPPWLTW*NLVSAK 271
E+ SRP TW N VS K
Sbjct: 23 EVGSSRPAXPTWRNPVSTK 41
>ALU1_HUMAN (P39188) Alu subfamily J sequence contamination warning entry|
Length = 591
Score = 40.8 bits (94), Expect = 0.001
Identities = 18/26 (69%), Positives = 18/26 (69%)
Frame = +3
Query: 138 KNRIVTGMEAHTCNPSTLGGRGGRIT 215
K G AH CNPSTLGGRGGRIT
Sbjct: 194 KKXXXPGAVAHACNPSTLGGRGGRIT 219
Score = 37.4 bits (85), Expect(2) = 4e-06
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 210 SAHLGLPKCWDYRCEPP 160
S+ LGLPKCWDYR EPP
Sbjct: 572 SSRLGLPKCWDYRREPP 588
Score = 35.8 bits (81), Expect = 0.029
Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -2
Query: 275 VF*QRRGFTMLARV-VSIS*SRDPPTSASQSAGITGVSLHA 156
VF GF +A+ + + S DPP SASQSAGITGVS A
Sbjct: 352 VFFVETGFHYVAQAGLELLGSSDPPASASQSAGITGVSHRA 392
Score = 35.4 bits (80), Expect(2) = 0.004
Identities = 15/16 (93%), Positives = 15/16 (93%)
Frame = +1
Query: 166 LTPVIPALWEAEVGGS 213
LTPVIPALWEAE GGS
Sbjct: 6 LTPVIPALWEAEAGGS 21
Score = 34.3 bits (77), Expect(2) = 0.002
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = -3
Query: 214 VIRPPRPPKVLGLQV*ASMPVTILFLKNTTYXXXXXXXXXXXXXLGIQHMDH 59
VI PPRPPKVLGLQ A+ P F + G+Q DH
Sbjct: 472 VILPPRPPKVLGLQAXATAPGXXXFFE---------TGSRSVAQAGVQWRDH 514
Score = 32.7 bits (73), Expect = 0.25
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSR-----------SPDLVIRPPRPPKVLGLQV*ASMPVTILF 140
F D VS C PGWS S I P+PP+ LGLQ A+ P L+
Sbjct: 397 FFXDRVSLCRPGWSAVARSRLTAASTSRAQAILLPQPPEXLGLQARATTPGXFLY 451
Score = 32.3 bits (72), Expect(2) = 0.009
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +2
Query: 161 GGSHL*SQHFGRPRWADH 214
GGS L SQHFGRPR DH
Sbjct: 103 GGSRLXSQHFGRPRREDH 120
Score = 30.8 bits (68), Expect(2) = 4e-06
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSRSPDL 215
F RD VS C PGWSR+P L
Sbjct: 551 FCRDGVSLCCPGWSRTPGL 569
Score = 30.8 bits (68), Expect = 0.94
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 148 LSQAWRLTPVIPALWEAEVGGS 213
+S+AW PV+PA EAE GGS
Sbjct: 45 ISRAWWRAPVVPATREAEAGGS 66
Score = 28.5 bits (62), Expect = 4.7
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -2
Query: 218 SRDPPTSASQSAGITGVSLHA 156
S DPP SAS+ AG TG HA
Sbjct: 327 SSDPPASASRVAGTTGARHHA 347
Score = 24.3 bits (51), Expect(2) = 0.002
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2
Query: 272 F*QRRGFTMLARVVSIS 222
F RRGFTML R+VS S
Sbjct: 452 FLXRRGFTMLPRLVSNS 468
Score = 24.3 bits (51), Expect(2) = 0.009
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 222 GDRDHPG*HGETSSLLK 272
G RD PG H ET SL K
Sbjct: 124 GVRDQPGQHSETPSLQK 140
Score = 22.3 bits (46), Expect(2) = 0.004
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 215 EIRRSRPPWLTW*NLVSAK 271
E R SRP W T N VS K
Sbjct: 23 EPRSSRPAWATXXNPVSTK 41
>ALU8_HUMAN (P39195) Alu subfamily SX sequence contamination warning entry|
Length = 591
Score = 39.3 bits (90), Expect(2) = 4e-05
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSRSPDL 215
FSRD VSPC PGWSR+PDL
Sbjct: 551 FSRDGVSPCWPGWSRTPDL 569
Score = 32.3 bits (72), Expect(2) = 7e-04
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +3
Query: 216 RSGDRDHPG*HGETSSLLK 272
RSG RD PG HGET SLLK
Sbjct: 122 RSGVRDQPGQHGETPSLLK 140
Score = 31.6 bits (70), Expect(2) = 0.004
Identities = 11/12 (91%), Positives = 11/12 (91%)
Frame = -1
Query: 195 LPKCWDYRCEPP 160
LPKCWDYR EPP
Sbjct: 475 LPKCWDYRREPP 486
Score = 31.6 bits (70), Expect = 0.55
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Frame = -3
Query: 271 FSRDEVSPC*PGWSR-----------SPDLVIRPPRPPKVLGLQV*ASMPVTILF 140
F D VS C PGWS S I P+PP+ LGLQ A+ P L+
Sbjct: 397 FFXDGVSLCRPGWSAVARSRLTATSASRVQAILLPQPPEXLGLQARATTPGXFLY 451
Score = 31.6 bits (70), Expect(2) = 7e-04
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +3
Query: 156 GMEAHTCNPSTLGGRGGRITRS 221
G AH CNPSTLGGR + S
Sbjct: 6 GAVAHACNPSTLGGRSPEVRSS 27
Score = 30.0 bits (66), Expect(2) = 0.065
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -1
Query: 270 LAETRFHHVSQGGLDLLIS 214
L ET FHHV Q GL+LL S
Sbjct: 354 LVETGFHHVGQAGLELLTS 372
Score = 30.0 bits (66), Expect = 1.6
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 12/36 (33%)
Frame = +1
Query: 193 EAEVGGSR------------DQEIETTLANMVKPRL 264
EA GGSR QE ET+LANMVKPRL
Sbjct: 201 EAGRGGSRLXSQHFGRKITXGQEFETSLANMVKPRL 236
Score = 28.9 bits (63), Expect(2) = 7e-04
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 215 EIRRSRPPWLTW*NLVSAK 271
E+R SRP W TW N VS K
Sbjct: 23 EVRSSRPAWPTWXNPVSTK 41
Score = 28.1 bits (61), Expect(2) = 7e-04
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Frame = +1
Query: 145 GLSQAWRLTPVIPALWEAE--VGGSRDQ 222
G +A LTPVIPALWE + G RDQ
Sbjct: 101 GGGRARWLTPVIPALWEEDHLRSGVRDQ 128
Score = 28.1 bits (61), Expect = 6.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 148 LSQAWRLTPVIPALWEAEVGGS 213
+S+AW PVIPA EAE G S
Sbjct: 45 ISRAWWRAPVIPATREAEAGES 66
Score = 26.2 bits (56), Expect(2) = 0.004
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = -2
Query: 272 F*QRRGFTMLARVVSIS 222
F RRGFTMLAR+VS S
Sbjct: 452 FXXRRGFTMLARLVSNS 468
Score = 25.4 bits (54), Expect(2) = 4e-05
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 212 DPPTSASQSAGITGVSLHACDNP 144
D S+SQSAGITGVS A P
Sbjct: 568 DLRXSSSQSAGITGVSHRARPPP 590
Score = 23.5 bits (49), Expect(2) = 0.065
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 196 PPKVLGLQV*ASMP 155
PPKVLGLQ A+ P
Sbjct: 376 PPKVLGLQAXATAP 389
>UTY_PANTR (Q6B4Z3) Ubiquitously transcribed Y chromosome tetratricopeptide|
repeat protein (Ubiquitously transcribed TPR protein on
the Y chromosome)
Length = 1079
Score = 30.4 bits (67), Expect(2) = 0.001
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 276 CILAETRFHHVSQGGLDLLIS 214
CI ET FHHV Q L+LL S
Sbjct: 1038 CIFVETGFHHVGQAHLELLTS 1058
Score = 29.6 bits (65), Expect = 2.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 207 AHLGLPKCWDYRCEPPCL*QSYS*RIPLTDYCIFISKFF 91
+HL LP W+YR P C T++CIF+ F
Sbjct: 1017 SHLSLPNSWNYRHLPSC----------PTNFCIFVETGF 1045
Score = 28.9 bits (63), Expect(2) = 0.001
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = -2
Query: 200 SASQSAGITGVSLHA 156
SASQSAGITGVS HA
Sbjct: 1064 SASQSAGITGVSHHA 1078
>ZBTB8_HUMAN (Q8NAP8) Zinc finger and BTB domain-containing protein 8|
Length = 512
Score = 27.7 bits (60), Expect = 7.9
Identities = 15/17 (88%), Positives = 15/17 (88%), Gaps = 1/17 (5%)
Frame = -2
Query: 209 PPTSASQSAGIT-GVSL 162
PP SASQSAGIT GVSL
Sbjct: 487 PPASASQSAGITDGVSL 503
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,248,758
Number of Sequences: 219361
Number of extensions: 740786
Number of successful extensions: 2011
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2006
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)