ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet79c03 |
|---|---|
| Clone Library Name | barley_pub |
>MYO5_YEAST (Q04439) Myosin-5| Length = 1219 Score = 32.0 bits (71), Expect = 0.46 Identities = 22/56 (39%), Positives = 27/56 (48%) Frame = +2 Query: 2 TRIYSPAPQRQATPLSLSARPEGAEPPSLGRATTPAYRPASASEGSVMADRANHPP 169 TR P P T +ARP PP+ TPA PA+A+ GS +AN PP Sbjct: 1024 TRRSVPNPASTLTASQSNARPS---PPTAATRATPAATPAAAAMGS--GRQANIPP 1074
>FOXJ2_MOUSE (Q9ES18) Forkhead box protein J2 (Fork head homologous X)| Length = 565 Score = 31.2 bits (69), Expect = 0.79 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Frame = +2 Query: 17 PAPQRQATPLSLSARPEGAEP---PSLGRATTPAYRPASASEGSVMADRANHPPVMQ 178 P PQ+Q P + GA P PS TTP + A A A HPP +Q Sbjct: 308 PQPQQQQAPTQGPSNVGGAPPLHTPSPDGCTTPGGKQAGAEGYGPPTGMAMHPPPLQ 364
>DPOL_ADE05 (P04495) DNA polymerase (EC 2.7.7.7)| Length = 1056 Score = 30.8 bits (68), Expect = 1.0 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = +2 Query: 17 PAPQRQATPLSLSARPEGAEPPSLGRATTPAYRPASASEGSV 142 PA QR+ +P L+ AE RA TP Y P S + G V Sbjct: 752 PAFQREYSPQQLALADSDAEESEDERAPTPFYSPPSGTPGHV 793
>BCSB2_ACEXY (O82860) Cyclic di-GMP-binding protein precursor (Cellulose| synthase regulatory subunit) (Cellulose synthase protein B) (CDGBP) Length = 802 Score = 30.8 bits (68), Expect = 1.0 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = +2 Query: 14 SPAPQRQATPLS-LSARPEGAEPPSLGRATTPAYRPASASEGSVMAD 151 +PAPQ + L L A P A PP+ A PA PA+ + + AD Sbjct: 25 APAPQPAGSDLPPLPAAPPQAAPPAAASAAPPATTPAADASAASAAD 71
>EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-interacting| protein) (Signal-integrating protein) Length = 560 Score = 30.4 bits (67), Expect = 1.4 Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = +2 Query: 14 SPAPQRQATPL--SLSARPEGAEPPSLGRATTPAYRPASASEGSVMADRANHPP 169 SP R P SLS RP A P S A +PA PA +GS+ DR PP Sbjct: 287 SPPQHRPRLPSTESLSRRPLPALPVSEAPAPSPAPSPAPGRKGSIQ-DRPLPPP 339
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 30.0 bits (66), Expect = 1.8 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Frame = +2 Query: 8 IYSPAPQRQATPLSLSARPEGAEPPSLGRATTPA-------YRPASASEGSVMADRANHP 166 +Y PAP R TP PE PPS T+ A RP++ E A P Sbjct: 550 LYIPAPSRPVTP---GGAPEPPAPPSAAAMTSTASIFLSAPLRPSARPEAPAPGPGAPEP 606 Query: 167 P 169 P Sbjct: 607 P 607
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 29.6 bits (65), Expect = 2.3 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 9/63 (14%) Frame = +2 Query: 8 IYSPAPQRQATP---------LSLSARPEGAEPPSLGRATTPAYRPASASEGSVMADRAN 160 +Y+ +R+A P LSLS PE +PP AT P + A RA Sbjct: 622 LYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGRAP 681 Query: 161 HPP 169 PP Sbjct: 682 SPP 684
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 29.3 bits (64), Expect = 3.0 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = +2 Query: 20 APQRQATPLSLSARPEGAEPPSLGRATTPAYRPASASEGSVMADRANHPP 169 AP ATP S A P A PP+ G TP + S+ S+ + N P Sbjct: 18 APAPAATPPSAGAAPGAATPPTSG-PPTPNNNSNNGSDPSIQQQQQNVAP 66
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 28.9 bits (63), Expect = 3.9 Identities = 17/37 (45%), Positives = 22/37 (59%) Frame = +2 Query: 29 RQATPLSLSARPEGAEPPSLGRATTPAYRPASASEGS 139 R TP +L+A GA P GR++ A PAS+S GS Sbjct: 147 RPPTPAALAAAEAGA-PGGPGRSSPSAASPASSSSGS 182
>TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II)| Length = 518 Score = 28.9 bits (63), Expect = 3.9 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 8/59 (13%) Frame = +2 Query: 17 PAPQRQATPLSLSARP--EGAEPPSLGR------ATTPAYRPASASEGSVMADRANHPP 169 PA + +A P + A P EGA PP+ G A PA A A+EG+ PP Sbjct: 406 PAAEGEAAPAAEGAAPPAEGAAPPAEGAVPPADGAAPPAEGAAPAAEGAAPPADGAAPP 464
>E1A_ADE05 (P03255) Early E1A 32 kDa protein| Length = 289 Score = 28.9 bits (63), Expect = 3.9 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +2 Query: 17 PAPQRQATPLSLSARPEGAEPPSLGRATTPAYRPASASEGSVMADRANHPP 169 P P+ + P + RP+ A P L R T+P R ++S S + +N PP Sbjct: 192 PEPEPEPEPARPTRRPKMA-PAILRRPTSPVSRECNSSTDSCDSGPSNTPP 241
>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2| Length = 924 Score = 28.9 bits (63), Expect = 3.9 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 6/55 (10%) Frame = +2 Query: 17 PAPQRQATPLSLSARPEGA------EPPSLGRATTPAYRPASASEGSVMADRANH 163 PAP+ A+P S+S RP GA PP G RP + G A N+ Sbjct: 196 PAPRPSASPSSMSPRPGGAVGGGGPRPPRTGVPRPGGGRPGAPVGGRSDAGGGNY 250
>GUX1_TRIRE (P62694) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase I) (CBHI) (1,4-beta-cellobiohydrolase) Length = 513 Score = 28.9 bits (63), Expect = 3.9 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +2 Query: 41 PLSLSARPEGAEPPSLGRATTPAYRPASASEGS 139 P+ + P G PP R TT RPA+ + S Sbjct: 442 PIGSTGNPSGGNPPGGNRGTTTTRRPATTTGSS 474
>GUX1_TRIKO (P62695) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase I) (CBHI) (1,4-beta-cellobiohydrolase) Length = 513 Score = 28.9 bits (63), Expect = 3.9 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +2 Query: 41 PLSLSARPEGAEPPSLGRATTPAYRPASASEGS 139 P+ + P G PP R TT RPA+ + S Sbjct: 442 PIGSTGNPSGGNPPGGNRGTTTTRRPATTTGSS 474
>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related| protein) Length = 440 Score = 28.5 bits (62), Expect = 5.1 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Frame = +2 Query: 14 SPAPQRQATPLSLSAR--PEGAEPPSLGRATTP 106 +P P ATP LS R P EPPS G A P Sbjct: 295 APPPPTSATPSLLSNRPPPPAREPPSRGAAPPP 327
>ODP2_ECOLI (P06959) Dihydrolipoyllysine-residue acetyltransferase component of| pyruvate dehydrogenase complex (EC 2.3.1.12) (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) Length = 629 Score = 28.5 bits (62), Expect = 5.1 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 35 ATPLSLSARPEGAEPPSLGRATTPAYRPASASEG 136 A P + A+ E A P +A PA PA+ +EG Sbjct: 282 AAPAAAPAKQEAAAPAPAAKAEAPAAAPAAKAEG 315
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)| Length = 283 Score = 28.5 bits (62), Expect = 5.1 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = +2 Query: 17 PAPQRQATPLSLSARPEGAEPPSLGRATTPAYRPASASEGSVM--ADRANHPP 169 P + + TP + + P+ PP+ + T P Y P+ + V +A+ PP Sbjct: 63 PPKEHKPTPPTYTPSPKPTPPPATPKPTPPTYTPSPKPKSPVYPPPPKASTPP 115
>CCD16_BRARE (Q6P0I6) Coiled-coil domain-containing protein 16| Length = 326 Score = 28.1 bits (61), Expect = 6.7 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = +2 Query: 50 LSARPEGAEPPSLGRATTPAYRPASASEGSVMADRANHPP 169 L +R A P+ A TPA+ PA+AS S RA PP Sbjct: 79 LKSRTAPAHTPA--PAHTPAHTPAAASSSSSTLKRAAEPP 116
>3MG_MOUSE (Q04841) DNA-3-methyladenine glycosylase (EC 3.2.2.21)| (3-methyladenine DNA glycosidase) (ADPG) (3-alkyladenine DNA glycosylase) (N-methylpurine-DNA glycosirase) Length = 333 Score = 28.1 bits (61), Expect = 6.7 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 41 PLSLSARPEGAEPPSLGRATTPAYRPASASEGSVM 145 P+S++ P+ +PP LGRA RP +A GS++ Sbjct: 17 PVSVTLLPDTEQPPFLGRAR----RPGNARAGSLV 47
>HUTP_BACSU (P10943) Hut operon positive regulatory protein| Length = 147 Score = 28.1 bits (61), Expect = 6.7 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = -2 Query: 137 TLRKRRRGDRLGWWLFPGSAAPLLQVLQREREGWPGAAGR 18 TL K RR RL L A QV + ER+GW G+ Sbjct: 1 TLHKERRIGRLSVLLLLNEAEESTQVEELERDGWKVCLGK 40
>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 28.1 bits (61), Expect = 6.7 Identities = 17/42 (40%), Positives = 18/42 (42%) Frame = +2 Query: 17 PAPQRQATPLSLSARPEGAEPPSLGRATTPAYRPASASEGSV 142 P P + P AR GA PP RA T A P S SV Sbjct: 291 PPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSV 332
>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) Length = 639 Score = 28.1 bits (61), Expect = 6.7 Identities = 18/52 (34%), Positives = 22/52 (42%) Frame = +2 Query: 20 APQRQATPLSLSARPEGAEPPSLGRATTPAYRPASASEGSVMADRANHPPVM 175 APQ Q P ++ P G +PP A P P S G + A PP M Sbjct: 557 APQMQGNP-TMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPM 607
>VINEX_MOUSE (Q9R1Z8) Vinexin (Sorbin and SH3 domain-containing protein 3)| (SH3-containing adapter molecule 1) (SCAM-1) (SH3 domain-containing protein SH3P3) Length = 733 Score = 27.7 bits (60), Expect = 8.8 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +2 Query: 41 PLSLSARPEGAEPPSLGRATTPAYRPASASEGS 139 P +SAR AEP LG PA RP + S Sbjct: 220 PKVVSARASSAEPRHLGTLQRPASRPGTTETSS 252
>SOX6_MOUSE (P40645) Transcription factor SOX-6 (SOX-LZ)| Length = 827 Score = 27.7 bits (60), Expect = 8.8 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +2 Query: 35 ATPLSLSARPEGAEPPSLGRATTPAYRPASASEGSVMADRANHP 166 A PL+LS+RP+ AEP + T PAS + + ++++ P Sbjct: 422 AQPLNLSSRPKTAEPVKSPTSPTQNLFPASKTSPVNLPNKSSIP 465
>FRS3_MOUSE (Q91WJ0) Fibroblast growth factor receptor substrate 3 (FGFR| substrate 3) (FRS2-beta) Length = 491 Score = 27.7 bits (60), Expect = 8.8 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Frame = +2 Query: 5 RIYSPAPQRQATPLSL------SARPEGAEPPSLGRATTPAYRPASASEGSVMAD 151 R P P RQ + + +ARP+G + PS+ A P P +S+ + D Sbjct: 404 RRQGPEPPRQLNYIQVELKGWGTARPKGPQNPSVSGAPGPTPHPVRSSDSYAVID 458
>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)| Length = 640 Score = 27.7 bits (60), Expect = 8.8 Identities = 16/53 (30%), Positives = 18/53 (33%) Frame = +2 Query: 20 APQRQATPLSLSARPEGAEPPSLGRATTPAYRPASASEGSVMADRANHPPVMQ 178 AP P SL P PP LG P RP G PP ++ Sbjct: 356 APMAAQQPPSLMQAPPITGPPPLGPPPAPPMRPPGPPSGPPPGPPPGAPPFLR 408
>MSA1_SCHPO (Q10277) Multicopy suppressor of sporulation protein msa1| Length = 533 Score = 27.7 bits (60), Expect = 8.8 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Frame = +2 Query: 17 PAPQRQATPL--SLSARPEGAEPPSLGRATTPAYRPASASEGSVMADRANHPPVM 175 PAP Q + S++ P GA P S+ ++ P Y P A S H P M Sbjct: 476 PAPMDQFSTFHQSMATLPPGAVPTSIPQSYYPIYSPEMAMPQSYSPMYYTHNPPM 530
>SOX6_HUMAN (P35712) Transcription factor SOX-6| Length = 828 Score = 27.7 bits (60), Expect = 8.8 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +2 Query: 35 ATPLSLSARPEGAEPPSLGRATTPAYRPASASEGSVMADRANHP 166 A PL+LS+RP+ AEP + T PAS + + ++++ P Sbjct: 422 AQPLNLSSRPKTAEPVKSPTSPTQNLFPASKTSPVNLPNKSSIP 465 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,661,067 Number of Sequences: 219361 Number of extensions: 462458 Number of successful extensions: 2328 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2299 length of database: 80,573,946 effective HSP length: 36 effective length of database: 72,676,950 effective search space used: 1744246800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
