ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet79b10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC112657.2| Homo sapiens X BAC RP11-647I17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116810 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 gaggctcacttccctcttgtg 34 ||||||||||||||||||||| Sbjct: 33597 gaggctcacttccctcttgtg 33617
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.70 Identities = 30/33 (90%) Strand = Plus / Plus Query: 39 catgccgatcgccgctaagctcttctacttcca 71 ||||||||||||| | |||||| |||||||||| Sbjct: 24094373 catgccgatcgcctccaagctcgtctacttcca 24094405
>dbj|AK072892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149P20, full insert sequence Length = 1249 Score = 42.1 bits (21), Expect = 0.70 Identities = 30/33 (90%) Strand = Plus / Plus Query: 39 catgccgatcgccgctaagctcttctacttcca 71 ||||||||||||| | |||||| |||||||||| Sbjct: 132 catgccgatcgcctccaagctcgtctacttcca 164
>dbj|AK070482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050C09, full insert sequence Length = 1518 Score = 42.1 bits (21), Expect = 0.70 Identities = 30/33 (90%) Strand = Plus / Plus Query: 39 catgccgatcgccgctaagctcttctacttcca 71 ||||||||||||| | |||||| |||||||||| Sbjct: 69 catgccgatcgcctccaagctcgtctacttcca 101
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.70 Identities = 30/33 (90%) Strand = Plus / Plus Query: 39 catgccgatcgccgctaagctcttctacttcca 71 ||||||||||||| | |||||| |||||||||| Sbjct: 24022579 catgccgatcgcctccaagctcgtctacttcca 24022611
>emb|AL772418.4|CNS08C9W Oryza sativa chromosome 12, . Partial sequence from BAC OJ1473_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 32463 Score = 42.1 bits (21), Expect = 0.70 Identities = 30/33 (90%) Strand = Plus / Plus Query: 39 catgccgatcgccgctaagctcttctacttcca 71 ||||||||||||| | |||||| |||||||||| Sbjct: 9447 catgccgatcgcctccaagctcgtctacttcca 9479 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 769,403 Number of Sequences: 3902068 Number of extensions: 769403 Number of successful extensions: 47064 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47012 Number of HSP's gapped (non-prelim): 52 length of query: 218 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 196 effective length of database: 17,147,199,772 effective search space: 3360851155312 effective search space used: 3360851155312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
