Clone Information

BLAST Search Result

Clone Name	baet79a09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast...	55	6e-08
2	CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chlorop...	40	0.001
3	CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloropl...	39	0.003
4	CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloropl...	39	0.003
5	CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloropl...	39	0.004
6	CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chlorop...	39	0.004
7	CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast...	39	0.005
8	CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloropl...	38	0.006
9	CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloropl...	38	0.006
10	CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloropla...	38	0.006
11	CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloropla...	38	0.008
12	CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chlorop...	37	0.014
13	CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloropl...	37	0.018
14	CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloropl...	37	0.018
15	CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast...	37	0.018
16	CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloropla...	36	0.023
17	CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloropla...	36	0.030
18	CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast...	35	0.039
19	CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloropla...	35	0.039
20	CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloropla...	35	0.067
21	CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloropla...	35	0.067
22	CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloropla...	34	0.11
23	CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloropl...	33	0.15
24	CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloropl...	33	0.15
25	CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chl...	33	0.15
26	CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloropl...	33	0.20
27	HIS7_SYNY3 (P48054) Imidazoleglycerol-phosphate dehydratase (EC ...	33	0.26
28	HIS7A_ARATH (P34047) Imidazoleglycerol-phosphate dehydratase 1 (...	32	0.44
29	HIS7B_ARATH (O23346) Probable imidazoleglycerol-phosphate dehydr...	32	0.44
30	PQQF_PSEPK (Q88QV3) Coenzyme PQQ synthesis protein F (EC 3.4.99....	32	0.57
31	CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast...	32	0.57
32	CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 membe...	31	0.74
33	CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloropl...	31	0.97
34	CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloropla...	31	0.97
35	HIS7_PEA (Q43072) Imidazoleglycerol-phosphate dehydratase (EC 4....	30	1.3
36	NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleop...	30	1.7
37	NUP88_HUMAN (Q99567) Nuclear pore complex protein Nup88 (Nucleop...	30	1.7
38	CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloropla...	30	1.7
39	HIS7_SYNEL (Q8DMI3) Imidazoleglycerol-phosphate dehydratase (EC ...	30	1.7
40	NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleopor...	30	1.7
41	TAOK2_XENLA (Q6GPK9) Serine/threonine-protein kinase TAO2 (EC 2....	30	2.2
42	HIS7_PROMA (Q7VDQ5) Imidazoleglycerol-phosphate dehydratase (EC ...	30	2.2
43	HIS7_TRIS1 (Q93DQ9) Imidazoleglycerol-phosphate dehydratase (EC ...	29	2.8
44	CNTRB_MOUSE (Q8CB62) Centrobin (LYST-interacting protein 8)	29	2.8
45	PDK_ASCSU (O02623) [Pyruvate dehydrogenase [lipoamide]] kinase, ...	29	2.8
46	CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloropla...	29	2.8
47	CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 membe...	29	2.8
48	HIS7_SYNPX (Q7U9M8) Imidazoleglycerol-phosphate dehydratase (EC ...	29	3.7
49	HIS7_ANASP (Q05068) Imidazoleglycerol-phosphate dehydratase (EC ...	29	3.7
50	ASB16_HUMAN (Q96NS5) Ankyrin repeat and SOCS box protein 16 (ASB...	29	3.7
51	CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII typ...	28	4.8
52	RANB3_HUMAN (Q9H6Z4) Ran-binding protein 3 (RanBP3)	28	4.8
53	CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast...	28	4.8
54	PTW3C_KLEPN (P45604) PTS system N-acetylglucosamine-specific EII...	28	4.8
55	CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloropl...	28	4.8
56	XDHE_BACSU (O32143) Probable xanthine dehydrogenase subunit E (E...	28	6.3
57	HIS7_GLOVI (Q7NMJ6) Imidazoleglycerol-phosphate dehydratase (EC ...	28	6.3
58	HIS7_PROMM (Q7V4R6) Imidazoleglycerol-phosphate dehydratase (EC ...	28	8.2
59	CTTB2_OTOGA (Q2QLG9) Cortactin-binding protein 2 (CortBP2)	28	8.2

>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 26/47 (55%), Positives = 29/47 (61%)
 Frame = +1

Query: 103 FAGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK+LPSS+L G+                SSSPWYGSDRVLYL
Sbjct: 13  FAGKAVKNLPSSALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYL 59

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>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 23/48 (47%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGKVVK  PSSS + G                 S SPWYG DRV YL
Sbjct: 13  FAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYGPDRVKYL 60

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>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 25/48 (52%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSS-SPWYGSDRVLYL 243
           FAGK V ++PSS LFGE                SS SPWYG DRVLYL
Sbjct: 13  FAGKAV-NVPSS-LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYL 58

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>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK  PSSS + G                 S SPWYG DRV YL
Sbjct: 13  FAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

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>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK  PSSS + G                 S SPWYG DRV YL
Sbjct: 13  FAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYL 60

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>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK  PSSS + G                 S SPWYG DRV YL
Sbjct: 13  FAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 60

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>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 24/48 (50%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSSLFGEXXXXXXXXXXXXX-XXXSSSPWYGSDRVLYL 243
           FAGK V ++PSSS FGE                 S SPWYG DRVLYL
Sbjct: 13  FAGKAV-NVPSSS-FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYL 58

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>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK  PSSS + G                 S SPWYG DRV YL
Sbjct: 12  FAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYL 59

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>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK  PSSS + G                 S SPWYG DRV YL
Sbjct: 13  FAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYGPDRVKYL 60

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>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 38.1 bits (87), Expect = 0.006
 Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK  PSSS + G                 SSSPWYG +RV YL
Sbjct: 13  FAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYL 60

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>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK  PSSS + G                 S SPWYG DRV YL
Sbjct: 12  FAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYL 59

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>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK   SSS + G                 SSSPWYG DRV YL
Sbjct: 13  FAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYL 60

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>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 19/46 (41%), Positives = 20/46 (43%)
 Frame = +1

Query: 106 AGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           AGK +K  PSS   G                 S SPWYG DRV YL
Sbjct: 17  AGKQLKLNPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYL 62

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>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 19/47 (40%), Positives = 20/47 (42%)
 Frame = +1

Query: 103 FAGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK V    SS + G                 S SPWYG DRV YL
Sbjct: 13  FAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 59

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>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 106 AGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           AGK VK  P++S + GE                SSSPWYG DRV YL
Sbjct: 14  AGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYGPDRVKYL 60

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>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 36.2 bits (82), Expect = 0.023
 Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAG  VK  PSSS + G                 S SPWYG DRV YL
Sbjct: 13  FAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYL 60

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>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 35.8 bits (81), Expect = 0.030
 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 133 SSSLFGEXXXXXXXXXXXXXXXXSS-SPWYGSDRVLYL 243
           SS+LFGE                SS SPWYG+DRVLYL
Sbjct: 21  SSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYL 58

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>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 23/47 (48%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 106 AGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           AGK VK  PSSS LFG                 S SPWYG DRV YL
Sbjct: 14  AGKAVKVAPSSSELFGNGRVSMRKTVKAPV---SDSPWYGPDRVKYL 57

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>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 35.4 bits (80), Expect = 0.039
 Identities = 20/47 (42%), Positives = 22/47 (46%)
 Frame = +1

Query: 103 FAGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK  P++S                    S SPWYGSDRV YL
Sbjct: 13  FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59

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>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 133 SSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           ++ +FGE                S SPWYG+DRVLYL
Sbjct: 18  AAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLYL 54

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>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 34.7 bits (78), Expect = 0.067
 Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK  P +S +FG                 S SPWYGSDRV YL
Sbjct: 13  FAGKAVKLSPGASEVFG--TGRVTMRKTVKPTGPSGSPWYGSDRVKYL 58

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>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 103 FAGKVVKDLPSSS-LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK VK+L SSS + G+                  SPWYG DRV YL
Sbjct: 13  FAGKAVKNLSSSSEVQGDARVSMRKTAATKKV---GSPWYGPDRVKYL 57

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>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 20/47 (42%), Positives = 22/47 (46%)
 Frame = +1

Query: 103 FAGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAG+ VK  PS+S                    SSSPWYG DRV YL
Sbjct: 13  FAGQAVKLSPSASEIS-GNGRITMRKAVAKSAPSSSPWYGPDRVKYL 58

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>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +1

Query: 142 LFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           +FGE                S SPWYG+DRVLYL
Sbjct: 24  VFGEGRITMRKTAAKPKPARSGSPWYGADRVLYL 57

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>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +1

Query: 103 FAGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK V   P++S                    S SPWYGSDRV YL
Sbjct: 13  FAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 59

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>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 18/47 (38%), Positives = 19/47 (40%)
 Frame = +1

Query: 103 FAGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAGK V    SS +                   S SPWYG DRV YL
Sbjct: 13  FAGKAVNVPSSSEITRNGKVTMRKTVTKAKPVSSGSPWYGPDRVKYL 59

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>HIS7_SYNY3 (P48054) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 210

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 215 HGLLEATFLAFAAVLRMVTRASPKRDDDGKSFTTLPAKAG 96
           H ++EATF AFA  +RM     P+R D      T+P+  G
Sbjct: 175 HHIIEATFKAFARAMRMAIEVDPRRAD------TIPSSKG 208

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>HIS7A_ARATH (P34047) Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19)|
           (IGPD 1)
          Length = 270

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 224 EPYHGLLEATFLAFAAVLRMVTRASPKRDDDGKSFTTLPAKAG 96
           E  H ++EATF AFA  LR  T   P+R        T+P+  G
Sbjct: 229 ENSHHIIEATFKAFARALRQATETDPRRGG------TIPSSKG 265

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>HIS7B_ARATH (O23346) Probable imidazoleglycerol-phosphate dehydratase 2 (EC|
           4.2.1.19) (IGPD 2)
          Length = 259

 Score = 32.0 bits (71), Expect = 0.44
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 215 HGLLEATFLAFAAVLRMVTRASPKRDDDGKSFTTLPAKAG 96
           H ++EATF AFA  LR  T + P+R        T+P+  G
Sbjct: 221 HHIIEATFKAFARALRQATESDPRRGG------TIPSSKG 254

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>PQQF_PSEPK (Q88QV3) Coenzyme PQQ synthesis protein F (EC 3.4.99.-)|
           (Pyrroloquinoline quinone biosynthesis protein F)
          Length = 766

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 216 PRAAGGNLLGLCRRLAHGDASLPEKRRRWQVLH 118
           P A GG L  LC+ LA  D  +  +RR  +V+H
Sbjct: 96  PNALGGGLERLCQMLAEPDLGIERQRREREVIH 128

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>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +1

Query: 130 PSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           PSS   G                 S SPWYG DRV YL
Sbjct: 24  PSSQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYL 61

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>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1B) (CAB) (LHCP)
          Length = 274

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 202 SSSPWYGSDRVLYL 243
           S+SPWYG DRVLYL
Sbjct: 54  STSPWYGPDRVLYL 67

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>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +1

Query: 103 FAGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FAG+ VK  PS+                     SSSPWYG DRV YL
Sbjct: 13  FAGQAVKLSPSAPEI-TGNGRVSMRKTVAKPVASSSPWYGPDRVKYL 58

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>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 19/46 (41%), Positives = 20/46 (43%)
 Frame = +1

Query: 106 AGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           AGK VK  PS+   G                 S SPWYG DRV YL
Sbjct: 15  AGKAVKLGPSAPEVGRVSMRKTVTKQVS----SGSPWYGPDRVKYL 56

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>HIS7_PEA (Q43072) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 281

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 215 HGLLEATFLAFAAVLRMVTRASPKR 141
           H ++EATF AFA  LR  T   P+R
Sbjct: 243 HHIIEATFKAFARALRQATEYDPRR 267

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>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 753

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 142 ETTMASPSLPCRQRLGKRGTWSLPPLLSMEVLCM 41
           E  + +  LPCRQ    RG W +P +L   ++C+
Sbjct: 451 EHILCTKPLPCRQPAPIRGFWIVPDILGPTMICI 484

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>NUP88_HUMAN (Q99567) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 741

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 142 ETTMASPSLPCRQRLGKRGTWSLPPLLSMEVLCM 41
           E  + +  LPCRQ    RG W +P +L   ++C+
Sbjct: 450 EHILCTKPLPCRQPAPIRGFWIVPDILGPTMICI 483

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>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +1

Query: 145 FGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           FGE                S SPWYG DRV YL
Sbjct: 23  FGEGRITMRKTVGKPKVAASGSPWYGPDRVKYL 55

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>HIS7_SYNEL (Q8DMI3) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 210

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 215 HGLLEATFLAFAAVLRMVTRASPKR 141
           H ++EATF AFA  LRM     P+R
Sbjct: 173 HHIIEATFKAFARALRMAIALDPRR 197

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>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 142 ETTMASPSLPCRQRLGKRGTWSLPPLLSMEVLCM 41
           E  + +  LPCRQ    RG W +P +L   ++C+
Sbjct: 451 EHILCTKPLPCRQPAPIRGFWIVPDILGPTMICI 484

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>TAOK2_XENLA (Q6GPK9) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand|
            and one amino acid protein 2)
          Length = 1025

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 205  WRQPSWPLPPSCAW*REPPRKETTMAS 125
            WRQP+   PPS +W   PP   +++++
Sbjct: 935  WRQPTLLAPPSASWGLHPPGSSSSLSA 961

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>HIS7_PROMA (Q7VDQ5) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 210

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 215 HGLLEATFLAFAAVLRMVTRASPKRDDDGKSFTTLPAKAGE 93
           H ++EA F AFA  LRM   A P+R     S   +  +AG+
Sbjct: 163 HHIVEACFKAFAKSLRMAIEADPRRGGSIPSSKGVLEQAGD 203

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>HIS7_TRIS1 (Q93DQ9) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 213

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 215 HGLLEATFLAFAAVLRMVTRASPKR 141
           H ++EA F AFA  LRM T   P+R
Sbjct: 178 HHIIEAGFKAFARSLRMATEIDPRR 202

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>CNTRB_MOUSE (Q8CB62) Centrobin (LYST-interacting protein 8)|
          Length = 887

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 154 PPRKETTMASPSLP--CRQRLGKRGTWSLPPL 65
           PP  +  +A PS P       G+R TW++PP+
Sbjct: 569 PPNPQAPLAEPSSPGPLEPEKGERRTWAMPPM 600

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>PDK_ASCSU (O02623) [Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial|
           precursor (EC 2.7.11.2) (Pyruvate dehydrogenase kinase)
          Length = 399

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +3

Query: 18  HSWRTKYSIHKTS----IDNNGGNDHVPLFPSLCRQGSEGLAIVVSFRGG 155
           H +   + + K S    ++N+G ++ +P    +  +G+E L+I +S RGG
Sbjct: 240 HLYHIMFELFKNSMRATVENHGADEDLPPIKVMVVRGAEDLSIKISDRGG 289

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>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +1

Query: 106 AGKVVKDLPSSSLFGEXXXXXXXXXXXXXXXXSSSPWYGSDRVLYL 243
           AG+ +K  PS+   G                 S SPWYG DRV YL
Sbjct: 14  AGQAMKLAPSTPELG--VGRVSMRKTAPKTVSSGSPWYGPDRVKYL 57

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>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,|
           chloroplast precursor (Chlorophyll a-b binding protein
           type II 1A) (CAB) (LHCP)
          Length = 278

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +1

Query: 208 SPWYGSDRVLYL 243
           SPWYG DRVLYL
Sbjct: 60  SPWYGPDRVLYL 71

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>HIS7_SYNPX (Q7U9M8) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 202

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 215 HGLLEATFLAFAAVLRMVTRASPKR 141
           H ++EA F AF+  LRM T   P+R
Sbjct: 161 HHIVEACFKAFSRALRMATEIDPRR 185

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>HIS7_ANASP (Q05068) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 209

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 215 HGLLEATFLAFAAVLRMVTRASPKR 141
           H ++EATF AFA   RM     P+R
Sbjct: 174 HHIIEATFKAFARAARMAIEVDPRR 198

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>ASB16_HUMAN (Q96NS5) Ankyrin repeat and SOCS box protein 16 (ASB-16)|
          Length = 453

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = +2

Query: 62  QQWRQRPCPSLPQPLPAR**RTC-----HRRLFSGRL 157
           QQ R R CPS P+    R  R+C     H  LFSG L
Sbjct: 34  QQCRSRRCPSSPRARLTRPHRSCRDPAVHHALFSGNL 70

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>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 202 SSSPWYGSDRVLYL 243
           S SPWYG DRV YL
Sbjct: 35  SGSPWYGPDRVKYL 48

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>RANB3_HUMAN (Q9H6Z4) Ran-binding protein 3 (RanBP3)|
          Length = 567

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 241 GRGPGQSRTTGCWRQPSWPLPPSCAW-*REPPRKETTMASPSLPCRQR 101
           G  P  S  T  WR PS      CA   +EP + E++ AS    C ++
Sbjct: 205 GAVPAASPDTAAWRSPSEAADEVCALEEKEPQKNESSNASEEEACEKK 252

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>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1

Query: 202 SSSPWYGSDRVLYL 243
           S SPWYG DRV YL
Sbjct: 25  SGSPWYGPDRVKYL 38

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>PTW3C_KLEPN (P45604) PTS system N-acetylglucosamine-specific EIICBA component|
           (EIICBA-Nag) (EII-Nag) [Includes: N-acetylglucosamine
           permease IIC component (PTS system
           N-acetylglucosamine-specific EIIC component);
           N-acetylglucosamine-specific phosphotrans
          Length = 651

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
 Frame = -3

Query: 194 FLAFAAVLRMVTRASPKRDDDGKSFTTLPAKAGEERDMV------VAAIVVDGGLVYAVF 33
           FL F+AV+RM    +P R+D      T  A +  E  +       +AA+     L     
Sbjct: 352 FLLFSAVIRMFNLKTPGREDKAADVVTEEANSNTEEGLTQLATSYIAAVGGTDNLKAIDA 411

Query: 32  CSPRMRSRCG 3
           C  R+R   G
Sbjct: 412 CITRLRLTVG 421

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>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type II CAB-1A) (LHCP)
          Length = 278

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +1

Query: 208 SPWYGSDRVLYL 243
           SPWYG DRV+YL
Sbjct: 60  SPWYGPDRVMYL 71

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>XDHE_BACSU (O32143) Probable xanthine dehydrogenase subunit E (EC 1.17.1.4)|
           (XDHase subunit E)
          Length = 173

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 134 DGKSFTTLPAKAGEERDMVVAAIVVDGGLVYAVFCSPRM 18
           DG S TT+     EE DM   A + +GG     +C+P M
Sbjct: 80  DGHSITTIEGLQKEELDMCQTAFLEEGGF-QCGYCTPGM 117

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>HIS7_GLOVI (Q7NMJ6) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 197

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 215 HGLLEATFLAFAAVLRMVTRASPKR 141
           H ++EA+F AFA  LR+     P+R
Sbjct: 162 HHIIEASFKAFARALRLAVEIDPRR 186

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>HIS7_PROMM (Q7V4R6) Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)|
           (IGPD)
          Length = 209

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 215 HGLLEATFLAFAAVLRMVTRASPKR 141
           H ++EA F AFA  LRM     P+R
Sbjct: 166 HHIVEACFKAFARALRMAIEIDPRR 190

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>CTTB2_OTOGA (Q2QLG9) Cortactin-binding protein 2 (CortBP2)|
          Length = 1655

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 146 KRDDDGKSFTTLPAKAGEERDMVVAAIVVDGGLVYAVFC 30
           KR  DGK   +LP K  ++R +V A++  +G L  +V C
Sbjct: 270 KRGGDGKPSLSLPRKT-KDRRLVSASVGTEGPLTRSVAC 307


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,246,597
Number of Sequences: 219361
Number of extensions: 744267
Number of successful extensions: 2611
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 2536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2602
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result