ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet79a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SMUF1_HUMAN (Q9HCE7) Smad ubiquitination regulatory factor 1 (EC... 29 2.7
2GI1L3_ARATH (Q940G6) Probable gibberellin receptor GID1L3 (EC 3.... 29 2.7
3CATA_STRCO (Q9Z598) Catalase (EC 1.11.1.6) 29 3.6
4MFNA_HALSA (Q9HSA3) L-tyrosine decarboxylase (EC 4.1.1.25) (TDC) 29 3.6
5Y567_BUCAP (Q8K902) Hypothetical transport protein BUsg567 28 6.1
6MMP3_HUMAN (P08254) Stromelysin-1 precursor (EC 3.4.24.17) (Matr... 28 6.1
7GID1_ORYSA (Q6L545) Gibberellin receptor GID1 (EC 3.-.-.-) (Gibb... 28 7.9

>SMUF1_HUMAN (Q9HCE7) Smad ubiquitination regulatory factor 1 (EC 6.3.2.-)|
           (Ubiquitin--protein ligase SMURF1) (Smad-specific E3
           ubiquitin ligase 1) (hSMURF1)
          Length = 757

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 128 HRPPILPAGVDEATGVTSKDVVLDADTGLSVRLYLPKLQDPSAKLP 265
           H+ P LP G ++ T V  +   L   TG+S   + P++  PS  +P
Sbjct: 231 HQSPELPEGYEQRTTVQGQVYFLHTQTGVST-WHDPRIPSPSGTIP 275



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>GI1L3_ARATH (Q940G6) Probable gibberellin receptor GID1L3 (EC 3.-.-.-)|
           (GID1-like protein 3)
          Length = 344

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 143 LPAGVDEATGVTSKDVVLDADTGLSVRLYLP 235
           +PA  +   GV S DV++D  T L  R+Y P
Sbjct: 53  VPANANPVNGVFSFDVIIDRQTNLLSRVYRP 83



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>CATA_STRCO (Q9Z598) Catalase (EC 1.11.1.6)|
          Length = 487

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query: 5   HQGPSQTPSPLSTAMDADADTVVFEAPAHFR---FYKSGKIERL 127
           + GP++T +PL+  +     T   EAP H +   F ++G + RL
Sbjct: 390 YDGPAETGTPLAAPLAVSGHTGTHEAPLHTKDDHFVQAGALYRL 433



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>MFNA_HALSA (Q9HSA3) L-tyrosine decarboxylase (EC 4.1.1.25) (TDC)|
          Length = 355

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 50  DADADTVVFEAPAHFRFYKSGKIERLHRPPILPAGVDEATGVTSKDVVLDADTGLSV 220
           DADA  VV  A AHF F K+  +  +    + P   D    V +   ++D DT + V
Sbjct: 93  DADAVNVVAPASAHFSFQKAADVLGVEL-RLAPTDGDHRADVAAVADLVDGDTAVVV 148



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>Y567_BUCAP (Q8K902) Hypothetical transport protein BUsg567|
          Length = 413

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -1

Query: 123 RSILPLL*KRKCAGASNTTVSASASMAVESGDGVWLGP 10
           +SILP+  K+ C  A+ +++S SA+ A  S   +++GP
Sbjct: 56  QSILPVFSKQFCLTATESSLSLSAATATMSIGTLFIGP 93



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>MMP3_HUMAN (P08254) Stromelysin-1 precursor (EC 3.4.24.17) (Matrix|
           metalloproteinase-3) (MMP-3) (Transin-1) (SL-1)
          Length = 477

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 137 PILPAGVDEATGVTSKDVV 193
           P LP+GVD A  VTSKD+V
Sbjct: 334 PSLPSGVDAAYEVTSKDLV 352



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>GID1_ORYSA (Q6L545) Gibberellin receptor GID1 (EC 3.-.-.-)|
           (Gibberellin-insensitive dwarf protein 1) (Protein
           GIBBERELLIN INSENSITIVE DWARF1)
          Length = 354

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 143 LPAGVDEATGVTSKDVVLDADTGLSVRLY 229
           +PA      GV+S D ++D   GL VR+Y
Sbjct: 53  VPANARPLEGVSSFDHIIDQSVGLEVRIY 81


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,858,561
Number of Sequences: 219361
Number of extensions: 564677
Number of successful extensions: 1487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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