ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet78h09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 2e-04
2gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare str... 54 2e-04
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
4dbj|AK098999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
5dbj|AK072141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
6dbj|AK070779.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
7dbj|AK059557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
8dbj|AK104137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
10dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
11dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
12ref|XM_470194.1| Oryza sativa (japonica cultivar-group), predic... 48 0.011
13gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.011
14dbj|AK100737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.011
15ref|NM_197207.1| Oryza sativa (japonica cultivar-group) putative... 46 0.044
16gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen... 46 0.044
17gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bi... 46 0.044
18dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.044
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.044
20dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.044
21dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.044
22dbj|AK103198.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.044
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.044
24gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.17
25emb|BX929339.2| Gallus gallus finished cDNA, clone ChEST184h18 44 0.17
26dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.17
27gb|BC074413.1| Xenopus laevis MGC84429 protein, mRNA (cDNA clone... 42 0.68
28gb|BC073509.1| Xenopus laevis hypothetical protein LOC443653, mR... 42 0.68
29ref|XM_804288.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 0.68
30gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromoso... 42 0.68
31dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.68
32dbj|AP006166.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.68
33dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.68
34dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.68
35dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.68
36dbj|AK063324.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.68
37gb|AY845024.1| Xenopus laevis macoilin mRNA, complete cds 42 0.68
38gb|AC157953.2| Gallus gallus BAC clone CH261-93C23 from chromoso... 42 0.68
39ref|XM_493799.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.7
40ref|XM_475974.1| Oryza sativa (japonica cultivar-group), predic... 40 2.7
41ref|XM_418667.1| PREDICTED: Gallus gallus similar to epsilon-sar... 40 2.7
42gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genom... 40 2.7
43gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
44gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, comp... 40 2.7
45gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 2.7
46ref|NM_001017036.2| Xenopus tropicalis NADH dehydrogenase (ubiqu... 40 2.7
47emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 b... 40 2.7
48gb|AC098642.5| Genomic sequence for Mus musculus, clone RP23-270... 40 2.7
49gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genom... 40 2.7
50gb|AC078893.10| Oryza sativa chromosome 10 BAC OSJNBb0044B19 gen... 40 2.7
51ref|XM_684238.1| PREDICTED: Danio rerio similar to multiple PDZ ... 40 2.7
52gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, comple... 40 2.7
53emb|BX950342.2| Gallus gallus finished cDNA, clone ChEST169e19 40 2.7
54dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
55dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
56gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosyn... 40 2.7
57dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
58dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
59emb|BX000461.4| Zebrafish DNA sequence from clone DKEY-170E5, co... 40 2.7
60dbj|AK107091.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
61dbj|AK070433.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
62emb|CT963096.1| M.spretus DNA sequence from clone XX-CH35_391C2 ... 40 2.7
63gb|AY104770.1| Zea mays PCO074909 mRNA sequence 40 2.7
64emb|CR761952.2| Xenopus tropicalis finished cDNA, clone TNeu040m07 40 2.7
65gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
66emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310... 40 2.7
67emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260... 40 2.7
68emb|AL713931.5|CNS07YP8 Oryza sativa chromosome 12, . BAC OSJNBa... 40 2.7
69emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003... 40 2.7
70emb|AL603682.36| Mouse DNA sequence from clone RP23-235J5 on chr... 40 2.7
71gb|M30947.1|CHPRGIT Chimpanzee rRNA gene internal transcribed sp... 40 2.7
72dbj|AP001294.1| Mus musculus genomic DNA, chromosome 7, clone:B3... 40 2.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                  
Query: 1       cacgctccaatggcagccacggcggtgaccctgcc 35
               |||||||||||||| |||||||| |||||||||||
Sbjct: 1414973 cacgctccaatggcggccacggctgtgaccctgcc 1414939



 Score = 48.1 bits (24), Expect = 0.011
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 60      cgtcgccgcctcctccgcccgccgctgcctcc 91
               ||||||||||||| ||||| ||||||||||||
Sbjct: 1940069 cgtcgccgcctccgccgcctgccgctgcctcc 1940038



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 65       ccgcctcctccgcccgccgc 84
                ||||||||||||||||||||
Sbjct: 30511072 ccgcctcctccgcccgccgc 30511053



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 59       ccgtcgccgcctcctccgcc 78
                ||||||||||||||||||||
Sbjct: 27332249 ccgtcgccgcctcctccgcc 27332268
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>gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1293G11,
             from chromosome 3, complete sequence
          Length = 147806

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 1     cacgctccaatggcagccacggcggtgaccctgcc 35
             |||||||||||||| |||||||| |||||||||||
Sbjct: 76476 cacgctccaatggcggccacggctgtgaccctgcc 76442
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                  
Query: 1       cacgctccaatggcagccacggcggtgaccctgcc 35
               |||||||||||||| |||||||| |||||||||||
Sbjct: 1414971 cacgctccaatggcggccacggctgtgaccctgcc 1414937



 Score = 48.1 bits (24), Expect = 0.011
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 60      cgtcgccgcctcctccgcccgccgctgcctcc 91
               ||||||||||||| ||||| ||||||||||||
Sbjct: 1940067 cgtcgccgcctccgccgcctgccgctgcctcc 1940036



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 65       ccgcctcctccgcccgccgc 84
                ||||||||||||||||||||
Sbjct: 30602494 ccgcctcctccgcccgccgc 30602475



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 59       ccgtcgccgcctcctccgcc 78
                ||||||||||||||||||||
Sbjct: 27423572 ccgtcgccgcctcctccgcc 27423591
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>dbj|AK098999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099N22,
          full insert sequence
          Length = 1011

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 1  cacgctccaatggcagccacggcggtgaccctgcc 35
          |||||||||||||| |||||||| |||||||||||
Sbjct: 7  cacgctccaatggcggccacggctgtgaccctgcc 41
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>dbj|AK072141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122I07, full
            insert sequence
          Length = 2916

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 1    cacgctccaatggcagccacggcggtgaccctgcc 35
            |||||||||||||| |||||||| |||||||||||
Sbjct: 1107 cacgctccaatggcggccacggctgtgaccctgcc 1073
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>dbj|AK070779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072F09,
          full insert sequence
          Length = 1044

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 1  cacgctccaatggcagccacggcggtgaccctgcc 35
          |||||||||||||| |||||||| |||||||||||
Sbjct: 29 cacgctccaatggcggccacggctgtgaccctgcc 63
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>dbj|AK059557.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G09,
          full insert sequence
          Length = 1013

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 1  cacgctccaatggcagccacggcggtgaccctgcc 35
          |||||||||||||| |||||||| |||||||||||
Sbjct: 4  cacgctccaatggcggccacggctgtgaccctgcc 38
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>dbj|AK104137.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-H07,
          full insert sequence
          Length = 1009

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 2  acgctccaatggcagccacggcggtgaccctgcc 35
          ||||||||||||| |||||||| |||||||||||
Sbjct: 1  acgctccaatggcggccacggctgtgaccctgcc 34
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 63       cgccgcctcctccgcccgccgctgcctcc 91
                ||||||||||||||| |||||||||||||
Sbjct: 16684671 cgccgcctcctccgcgcgccgctgcctcc 16684699
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>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0047B10
          Length = 158798

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 63    cgccgcctcctccgcccgccgctgcctcc 91
             ||||||||||||||| |||||||||||||
Sbjct: 33365 cgccgcctcctccgcgcgccgctgcctcc 33393
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>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1596_C06
          Length = 124721

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 63    cgccgcctcctccgcccgccgctgcctcc 91
             ||||||||||||||| |||||||||||||
Sbjct: 92810 cgccgcctcctccgcgcgccgctgcctcc 92838
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>ref|XM_470194.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1869

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 60 cgtcgccgcctcctccgcccgccgctgcctcc 91
          ||||||||||||| ||||| ||||||||||||
Sbjct: 66 cgtcgccgcctccgccgcctgccgctgcctcc 97
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>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06,
             complete sequence
          Length = 122218

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 60    cgtcgccgcctcctccgcccgccgctgcctcc 91
             ||||||||||||| ||||| ||||||||||||
Sbjct: 35342 cgtcgccgcctccgccgcctgccgctgcctcc 35373
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>dbj|AK100737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118C14, full
           insert sequence
          Length = 2292

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 60  cgtcgccgcctcctccgcccgccgctgcctcc 91
           ||||||||||||| ||||| ||||||||||||
Sbjct: 147 cgtcgccgcctccgccgcctgccgctgcctcc 178
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>ref|NM_197207.1| Oryza sativa (japonica cultivar-group) putative leaf protein
           (OSJNBa0078O01.25), mRNA
          Length = 1638

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 56  tccccgtcgccgcctcctccgcc 78
           |||||||||||||||||||||||
Sbjct: 85  tccccgtcgccgcctcctccgcc 107
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>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 56    tccccgtcgccgcctcctccgcc 78
             |||||||||||||||||||||||
Sbjct: 96072 tccccgtcgccgcctcctccgcc 96094
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>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete
             sequence
          Length = 50000

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 78    ccgccgctgcctccagctcctcc 100
             |||||||||||||||||||||||
Sbjct: 15695 ccgccgctgcctccagctcctcc 15717
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 56       tccccgtcgccgcctcctccgcc 78
                |||||||||||||||||||||||
Sbjct: 18592261 tccccgtcgccgcctcctccgcc 18592283



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 65       ccgcctcctccgcccgccgctgcc 88
                |||||||||| |||||||||||||
Sbjct: 17201771 ccgcctcctctgcccgccgctgcc 17201748
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 41      cggcgccgtcgcccttccccgtcgccg 67
               |||||||||||||||||||| ||||||
Sbjct: 8786987 cggcgccgtcgcccttccccttcgccg 8787013
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>dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0039C01
          Length = 151054

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 41     cggcgccgtcgcccttccccgtcgccg 67
              |||||||||||||||||||| ||||||
Sbjct: 145628 cggcgccgtcgcccttccccttcgccg 145654
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>dbj|AP005051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0458G06
          Length = 139109

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 41    cggcgccgtcgcccttccccgtcgccg 67
             |||||||||||||||||||| ||||||
Sbjct: 17087 cggcgccgtcgcccttccccttcgccg 17113
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>dbj|AK103198.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A05, full
           insert sequence
          Length = 2625

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 56  tccccgtcgccgcctcctccgcc 78
           |||||||||||||||||||||||
Sbjct: 153 tccccgtcgccgcctcctccgcc 175
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 46.1 bits (23), Expect = 0.044
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 56       tccccgtcgccgcctcctccgcc 78
                |||||||||||||||||||||||
Sbjct: 18603114 tccccgtcgccgcctcctccgcc 18603136



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 65       ccgcctcctccgcccgccgctgcc 88
                |||||||||| |||||||||||||
Sbjct: 17210811 ccgcctcctctgcccgccgctgcc 17210788
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>gb|AC130724.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0409G01,
              complete sequence
          Length = 143263

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 61     gtcgccgcctcctccgcccgccgctg 86
              ||||||||||||||||||||| ||||
Sbjct: 101374 gtcgccgcctcctccgcccgcagctg 101349
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>emb|BX929339.2| Gallus gallus finished cDNA, clone ChEST184h18
          Length = 711

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 63 cgccgcctcctccgcccgccgc 84
          ||||||||||||||||||||||
Sbjct: 37 cgccgcctcctccgcccgccgc 16
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 61       gtcgccgcctcctccgcccgccgctg 86
                ||||||||||||||||||||| ||||
Sbjct: 13730315 gtcgccgcctcctccgcccgcagctg 13730290



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 47       cgtcgcccttccccgtcgccgcctcctc 74
                ||||||||||| ||||||||||| ||||
Sbjct: 28935607 cgtcgcccttctccgtcgccgccgcctc 28935580
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>gb|BC074413.1| Xenopus laevis MGC84429 protein, mRNA (cDNA clone MGC:84429
           IMAGE:7019528), complete cds
          Length = 998

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 69  ctcctccgcccgccgctgcct 89
           |||||||||||||||||||||
Sbjct: 457 ctcctccgcccgccgctgcct 437
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>gb|BC073509.1| Xenopus laevis hypothetical protein LOC443653, mRNA (cDNA clone
           IMAGE:5155543), partial cds
          Length = 1594

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 68  cctcctccgcccgccgctgcc 88
           |||||||||||||||||||||
Sbjct: 130 cctcctccgcccgccgctgcc 110
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>ref|XM_804288.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053511537.69) partial mRNA
          Length = 745

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  ccgccgctgcctccagctcct 98
           |||||||||||||||||||||
Sbjct: 599 ccgccgctgcctccagctcct 579
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>gb|AC161467.2| Gallus gallus BAC clone CH261-89H14 from chromosome unknown, complete
              sequence
          Length = 308703

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 56     tccccgtcgccgcctcctccgcccgccgc 84
              |||||||||||||| ||||||||| ||||
Sbjct: 226643 tccccgtcgccgccgcctccgccccccgc 226615
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 79       cgccgctgcctccagctcctccgct 103
                |||||||||||||| ||||||||||
Sbjct: 11210047 cgccgctgcctccacctcctccgct 11210023



 Score = 42.1 bits (21), Expect = 0.68
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 50      cgcccttccccgtcgccgcctcctccgcc 78
               |||||||| |||||||||||||| |||||
Sbjct: 6218027 cgcccttcgccgtcgccgcctccgccgcc 6217999
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>dbj|AP006166.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1435D02
          Length = 131152

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 79    cgccgctgcctccagctcctccgct 103
             |||||||||||||| ||||||||||
Sbjct: 25346 cgccgctgcctccacctcctccgct 25322
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>dbj|AP005748.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0042E12
          Length = 164688

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 79    cgccgctgcctccagctcctccgct 103
             |||||||||||||| ||||||||||
Sbjct: 84869 cgccgctgcctccacctcctccgct 84845
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>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0436F11
          Length = 165550

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 50     cgcccttccccgtcgccgcctcctccgcc 78
              |||||||| |||||||||||||| |||||
Sbjct: 131846 cgcccttcgccgtcgccgcctccgccgcc 131818
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>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0516A04
          Length = 145107

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 50    cgcccttccccgtcgccgcctcctccgcc 78
             |||||||| |||||||||||||| |||||
Sbjct: 12103 cgcccttcgccgtcgccgcctccgccgcc 12075
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>dbj|AK063324.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H05, full
            insert sequence
          Length = 1808

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 50   cgcccttccccgtcgccgcctcctccgcc 78
            |||||||| |||||||||||||| |||||
Sbjct: 1461 cgcccttcgccgtcgccgcctccgccgcc 1433
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>gb|AY845024.1| Xenopus laevis macoilin mRNA, complete cds
          Length = 2777

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 68  cctcctccgcccgccgctgcc 88
           |||||||||||||||||||||
Sbjct: 184 cctcctccgcccgccgctgcc 164
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>gb|AC157953.2| Gallus gallus BAC clone CH261-93C23 from chromosome unknown, complete
             sequence
          Length = 231813

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 56    tccccgtcgccgcctcctccgcccgccgc 84
             |||||||||||||| ||||||||| ||||
Sbjct: 27135 tccccgtcgccgccgcctccgccccccgc 27107
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>ref|XM_493799.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1671

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 65 ccgcctcctccgcccgccgc 84
          ||||||||||||||||||||
Sbjct: 43 ccgcctcctccgcccgccgc 24
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>ref|XM_475974.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2100

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 47   cgtcgcccttccccgtcgccgcctcctc 74
            ||||||||||| ||||||||||| ||||
Sbjct: 1249 cgtcgcccttctccgtcgccgccgcctc 1222
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>ref|XM_418667.1| PREDICTED: Gallus gallus similar to epsilon-sarcoglycan
          (LOC420567), mRNA
          Length = 1630

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 63 cgccgcctcctccgcccgccgctgcctc 90
          |||||| ||||||||||||||| |||||
Sbjct: 47 cgccgcatcctccgcccgccgccgcctc 20
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>gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genomic sequence, complete
             sequence
          Length = 138345

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    ccgtcgccgcctcctccgcc 78
             ||||||||||||||||||||
Sbjct: 32456 ccgtcgccgcctcctccgcc 32475
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>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0009C07, complete sequence
          Length = 148731

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 47    cgtcgcccttccccgtcgccgcctcctc 74
             ||||||||||| ||||||||||| ||||
Sbjct: 89900 cgtcgcccttctccgtcgccgccgcctc 89873
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>gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, complete sequence
          Length = 203141

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    tccccgtcgccgcctcctccgccc 79
             |||||||| |||||||||||||||
Sbjct: 54735 tccccgtctccgcctcctccgccc 54758
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      gctccaatggcagccacggc 23
              ||||||||||||||||||||
Sbjct: 458494 gctccaatggcagccacggc 458513
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>ref|NM_001017036.2| Xenopus tropicalis NADH dehydrogenase (ubiquinone) 1 beta
           subcomplex 4 (ndufb4), mRNA
          Length = 516

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  cctcctccgcccgccgctgc 87
           ||||||||||||||||||||
Sbjct: 119 cctcctccgcccgccgctgc 100
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>emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 bp, chromosome 7
          Length = 281000

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     tccccgtcgccgcctcctccgccc 79
              |||||||| |||||||||||||||
Sbjct: 168142 tccccgtctccgcctcctccgccc 168119
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>gb|AC098642.5| Genomic sequence for Mus musculus, clone RP23-270O7, complete sequence
          Length = 188834

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 45    gccgtcgcccttccccgtcgccgcctcc 72
             |||| |||||||||||| ||||||||||
Sbjct: 90116 gccgccgcccttccccgccgccgcctcc 90143
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>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
             sequence
          Length = 139872

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    ccgcctcctccgcccgccgc 84
             ||||||||||||||||||||
Sbjct: 42645 ccgcctcctccgcccgccgc 42626
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>gb|AC078893.10| Oryza sativa chromosome 10 BAC OSJNBb0044B19 genomic sequence, complete
             sequence
          Length = 81784

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 65    ccgcctcctccgcccgccgctgcc 88
             |||||||||| |||||||||||||
Sbjct: 45829 ccgcctcctctgcccgccgctgcc 45852
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>ref|XM_684238.1| PREDICTED: Danio rerio similar to multiple PDZ domain protein
            (LOC560839), mRNA
          Length = 2286

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 69   ctcctccgcccgccgctgcctcca 92
            ||||||| ||||||||||||||||
Sbjct: 1372 ctcctccccccgccgctgcctcca 1395
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>gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, complete sequence
          Length = 211945

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    cgccgcctcctccgcccgcc 82
             ||||||||||||||||||||
Sbjct: 80153 cgccgcctcctccgcccgcc 80172
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>emb|BX950342.2| Gallus gallus finished cDNA, clone ChEST169e19
          Length = 1914

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                      
Query: 63 cgccgcctcctccgcccgccgctgcctc 90
          |||||| ||||||||||||||| |||||
Sbjct: 51 cgccgcatcctccgcccgccgccgcctc 24
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 65       ccgcctcctccgcccgccgc 84
                ||||||||||||||||||||
Sbjct: 24241614 ccgcctcctccgcccgccgc 24241595



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 66       cgcctcctccgcccgccgct 85
                ||||||||||||||||||||
Sbjct: 19789758 cgcctcctccgcccgccgct 19789739



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 66      cgcctcctccgcccgccgct 85
               ||||||||||||||||||||
Sbjct: 1347905 cgcctcctccgcccgccgct 1347886
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 59       ccgtcgccgcctcctccgcc 78
                ||||||||||||||||||||
Sbjct: 22733824 ccgtcgccgcctcctccgcc 22733843
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>gb|AF210249.1|AF210249 Streptomyces verticillus bleomycin biosynthetic gene cluster, complete
             cds
          Length = 77457

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    ccgtcgccgcctcctccgcccgcc 82
             |||||||||||||| |||||||||
Sbjct: 56722 ccgtcgccgcctccgccgcccgcc 56745
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>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0024F06
          Length = 129402

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     ccgtcgccgcctcctccgcc 78
              ||||||||||||||||||||
Sbjct: 110536 ccgtcgccgcctcctccgcc 110555
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>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0712E02
          Length = 158084

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    ccgtcgccgcctcctccgcc 78
             ||||||||||||||||||||
Sbjct: 51213 ccgtcgccgcctcctccgcc 51232
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>emb|BX000461.4| Zebrafish DNA sequence from clone DKEY-170E5, complete sequence
          Length = 170304

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 69    ctcctccgcccgccgctgcctcca 92
             ||||||| ||||||||||||||||
Sbjct: 87927 ctcctccccccgccgctgcctcca 87950
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>dbj|AK107091.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H01, full
            insert sequence
          Length = 2265

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 47   cgtcgcccttccccgtcgccgcctcctc 74
            ||||||||||| ||||||||||| ||||
Sbjct: 1309 cgtcgcccttctccgtcgccgccgcctc 1282
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>dbj|AK070433.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054B12, full
           insert sequence
          Length = 3664

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 65  ccgcctcctccgcccgccgc 84
           ||||||||||||||||||||
Sbjct: 186 ccgcctcctccgcccgccgc 167
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>emb|CT963096.1| M.spretus DNA sequence from clone XX-CH35_391C2 on chromosome 7, complete
              sequence
          Length = 164625

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     tccccgtcgccgcctcctccgccc 79
              |||||||| |||||||||||||||
Sbjct: 126114 tccccgtctccgcctcctccgccc 126137
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>gb|AY104770.1| Zea mays PCO074909 mRNA sequence
          Length = 3628

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 63  cgccgcctcctccgcccgcc 82
           ||||||||||||||||||||
Sbjct: 158 cgccgcctcctccgcccgcc 177
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>emb|CR761952.2| Xenopus tropicalis finished cDNA, clone TNeu040m07
          Length = 516

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 68  cctcctccgcccgccgctgc 87
           ||||||||||||||||||||
Sbjct: 119 cctcctccgcccgccgctgc 100
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 65       ccgcctcctccgcccgccgc 84
                ||||||||||||||||||||
Sbjct: 24169820 ccgcctcctccgcccgccgc 24169801



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 66       cgcctcctccgcccgccgct 85
                ||||||||||||||||||||
Sbjct: 19715972 cgcctcctccgcccgccgct 19715953



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 66      cgcctcctccgcccgccgct 85
               ||||||||||||||||||||
Sbjct: 1347905 cgcctcctccgcccgccgct 1347886
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>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 132733

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 65     ccgcctcctccgcccgccgc 84
              ||||||||||||||||||||
Sbjct: 126305 ccgcctcctccgcccgccgc 126286
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>emb|AL772427.4|CNS08CA5 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135793

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    ccgcctcctccgcccgccgc 84
             ||||||||||||||||||||
Sbjct: 18388 ccgcctcctccgcccgccgc 18369
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>emb|AL713931.5|CNS07YP8 Oryza sativa chromosome 12, . BAC OSJNBa0035B12 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 161160

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    cgcctcctccgcccgccgct 85
             ||||||||||||||||||||
Sbjct: 66644 cgcctcctccgcccgccgct 66625
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>emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 157453

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    cgcctcctccgcccgccgct 85
             ||||||||||||||||||||
Sbjct: 81264 cgcctcctccgcccgccgct 81283
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>emb|AL603682.36| Mouse DNA sequence from clone RP23-235J5 on chromosome 11, complete
             sequence
          Length = 211680

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 45    gccgtcgcccttccccgtcgccgcctcc 72
             |||| |||||||||||| ||||||||||
Sbjct: 15363 gccgccgcccttccccgccgccgcctcc 15336
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>gb|M30947.1|CHPRGIT Chimpanzee rRNA gene internal transcribed spacer 1 (ITS1)
          Length = 1051

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 58  cccgtcgccgcctcctccgcccgccgct 85
           ||||||||||||||| |||| |||||||
Sbjct: 412 cccgtcgccgcctccgccgcgcgccgct 439
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>dbj|AP001294.1| Mus musculus genomic DNA, chromosome 7, clone:B385, complete sequence
          Length = 86661

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    tccccgtcgccgcctcctccgccc 79
             |||||||| |||||||||||||||
Sbjct: 31013 tccccgtctccgcctcctccgccc 30990


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,416,644
Number of Sequences: 3902068
Number of extensions: 1416644
Number of successful extensions: 155634
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 152345
Number of HSP's gapped (non-prelim): 3283
length of query: 212
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 190
effective length of database: 17,147,199,772
effective search space: 3257967956680
effective search space used: 3257967956680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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