ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet78h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakar... 32 0.42
2EFP_MYCPA (Q741J3) Elongation factor P (EF-P) 31 0.93
3EFP_MYCTU (P64034) Elongation factor P (EF-P) 29 2.7
4EFP_MYCBO (P64035) Elongation factor P (EF-P) 29 2.7
5ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2 28 4.6
6EFP_COREF (Q8FT34) Elongation factor P (EF-P) 28 4.6
7EFP_CORGL (Q45288) Elongation factor P (EF-P) 28 6.0
8ROUGH_DROME (P10181) Homeobox protein rough 28 7.9
9IP6K1_RAT (Q9ESM0) Inositol hexaphosphate kinase 1 (EC 2.7.4.21)... 28 7.9
10IP6K1_MOUSE (Q6PD10) Inositol hexaphosphate kinase 1 (EC 2.7.4.2... 28 7.9
11IP6K1_HUMAN (Q92551) Inositol hexaphosphate kinase 1 (EC 2.7.4.2... 28 7.9
12COAD_CORGL (Q8NQU5) Phosphopantetheine adenylyltransferase (EC 2... 28 7.9

>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte|
            stimulating factor) (Superficial zone proteoglycan)
            [Contains: Proteoglycan-4 C-terminal part]
          Length = 1404

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 193  VQPQPNQLTYHNGAVLHGDIPVSVLWYG 276
            +Q  P +L Y +  VLH ++ VS+LW G
Sbjct: 1318 IQYSPARLAYQDKGVLHNEVKVSILWRG 1345



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>EFP_MYCPA (Q741J3) Elongation factor P (EF-P)|
          Length = 187

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +1

Query: 187 FLVQPQPNQLTYHNGAVLHGDIPVSV 264
           FL++  P Q+ +HNG+ L+ ++PVSV
Sbjct: 104 FLLEGMPVQVAFHNGSPLYIELPVSV 129



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>EFP_MYCTU (P64034) Elongation factor P (EF-P)|
          Length = 187

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 187 FLVQPQPNQLTYHNGAVLHGDIPVSV 264
           FL++  P Q+ +HNG  L+ ++PV+V
Sbjct: 104 FLLEGMPVQVAFHNGVPLYIELPVTV 129



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>EFP_MYCBO (P64035) Elongation factor P (EF-P)|
          Length = 187

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 187 FLVQPQPNQLTYHNGAVLHGDIPVSV 264
           FL++  P Q+ +HNG  L+ ++PV+V
Sbjct: 104 FLLEGMPVQVAFHNGVPLYIELPVTV 129



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>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 48  NLFPRSKPLFLPSPNGQEKXXXXXGANGARR*HGIRVGYREHEEAHVPGPAPAEP 212
           N +P+ +P   P+P+   K       N A        GY  H     PGP P +P
Sbjct: 608 NTYPQWQP---PAPHDPSKAAAAADPNAAW------AGYYSHYYQQPPGPVPGQP 653



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>EFP_COREF (Q8FT34) Elongation factor P (EF-P)|
          Length = 187

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 187 FLVQPQPNQLTYHNGAVLHGDIPVSV 264
           FL++    Q+++H+G  L G++PVSV
Sbjct: 104 FLLENMRVQVSFHDGEALFGELPVSV 129



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>EFP_CORGL (Q45288) Elongation factor P (EF-P)|
          Length = 187

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 187 FLVQPQPNQLTYHNGAVLHGDIPVSV 264
           FL++    Q+++H G  L G++PVSV
Sbjct: 104 FLLENMRVQVSFHEGEALFGELPVSV 129



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>ROUGH_DROME (P10181) Homeobox protein rough|
          Length = 350

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 1   SHPHKQHHTRHGHVRKTFFQDLNPSSSPP 87
           S  H+QHH  H H  +   Q L+  S PP
Sbjct: 119 SQQHQQHHHHHHHPPQLVHQKLSYVSPPP 147



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>IP6K1_RAT (Q9ESM0) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6|
           kinase 1) (Inositol hexakisphosphate kinase 1)
          Length = 433

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -3

Query: 264 DGDGDVAVQHGAVVVRELVRLGLDQEHELPRARGSRRGCHVSGERH*RQEEE 109
           D DG + +     V  E V      E E PR + SRR  H SG     +EE+
Sbjct: 84  DSDGYINLVAYPYVESETVEQDDTPEREQPRRKHSRRSLHRSGSGSDHKEEK 135



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>IP6K1_MOUSE (Q6PD10) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6|
           kinase 1) (Inositol hexakisphosphate kinase 1)
          Length = 433

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -3

Query: 264 DGDGDVAVQHGAVVVRELVRLGLDQEHELPRARGSRRGCHVSGERH*RQEEE 109
           D DG + +     V  E V      E E PR + SRR  H SG     +EE+
Sbjct: 84  DSDGYINLVAYPYVESETVEQDDTPEREQPRRKHSRRSLHRSGSGSDHKEEK 135



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>IP6K1_HUMAN (Q92551) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6|
           kinase 1) (Inositol hexakisphosphate kinase 1)
          Length = 441

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -3

Query: 264 DGDGDVAVQHGAVVVRELVRLGLDQEHELPRARGSRRGCHVSGERH*RQEEE 109
           D DG + +     V  E V      E E PR + SRR  H SG     +EE+
Sbjct: 84  DSDGYINLVAYPYVESETVEQDDTTEREQPRRKHSRRSLHRSGSGSDHKEEK 135



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>COAD_CORGL (Q8NQU5) Phosphopantetheine adenylyltransferase (EC 2.7.7.3)|
           (Pantetheine-phosphate adenylyltransferase) (PPAT)
           (Dephospho-CoA pyrophosphorylase)
          Length = 160

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 252 DVAVQHGAVVVRELVRLGLDQEHELPRARGSRR 154
           D   +HG   + + +R  LD E+ELP A+ +RR
Sbjct: 75  DYTTEHGIGALVKGLRSSLDYEYELPMAQMNRR 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,727,387
Number of Sequences: 219361
Number of extensions: 495604
Number of successful extensions: 1891
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1866
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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