| Clone Name | baet78g09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY857762.1| Triticum monococcum peroxidase 8 (POX8) mRNA, complete cds Length = 1282 Score = 234 bits (118), Expect = 9e-59 Identities = 130/134 (97%) Strand = Plus / Plus Query: 75 ccatggcgagcagcggcagcctggccggtctggcggtgctgctcaccgccgtgctgtgcc 134 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct: 63 ccatggcgagcagcggcgggctggccggtctggcggtgctgctcaccgccgtgctgtgcc 122 Query: 135 tgcagctgccggtccacagccgcgcccagctgcgcgtcgggttctacaacaccacctgcc 194 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 123 tgcagctgccggtccacagccgcgcgcagctgcgcgtggggttctacaacaccacctgcc 182 Query: 195 ccaacgccgaggcc 208 |||||||||||||| Sbjct: 183 ccaacgccgaggcc 196
>ref|NM_183815.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1071 Score = 60.0 bits (30), Expect = 3e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 205 ||||||| |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 73 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 126
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 3e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 205 ||||||| |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 12534345 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 12534398 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 167 cgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||||||||||||| | | || |||||||||||||||||| Sbjct: 12482977 cgcgtcgggttctaccagagcagctgccccaacgccgaggc 12483017 Score = 48.1 bits (24), Expect = 0.011 Identities = 48/56 (85%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 12547310 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 12547365
>dbj|AP002971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0537A05 Length = 152396 Score = 60.0 bits (30), Expect = 3e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 205 ||||||| |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 45955 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 46008 Score = 48.1 bits (24), Expect = 0.011 Identities = 48/56 (85%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 58920 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 58975
>dbj|AP004358.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1135C02 Length = 152306 Score = 60.0 bits (30), Expect = 3e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 205 ||||||| |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 119960 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 120013 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 167 cgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||||||||||||| | | || |||||||||||||||||| Sbjct: 68592 cgcgtcgggttctaccagagcagctgccccaacgccgaggc 68632 Score = 48.1 bits (24), Expect = 0.011 Identities = 48/56 (85%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 132925 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 132980
>dbj|AK121616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C11, full insert sequence Length = 5938 Score = 60.0 bits (30), Expect = 3e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 205 ||||||| |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 135 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 188
>tpe|BN000543.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx14 gene for class III peroxidase 14 precursor, exons 1-3 Length = 5620 Score = 60.0 bits (30), Expect = 3e-06 Identities = 48/54 (88%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgag 205 ||||||| |||||||| || |||||||||||||||| ||||||||| |||||| Sbjct: 73 agccgcggccagctgcaggtggggttctacaacaccagctgccccaatgccgag 126
>ref|NM_183810.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 167 cgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||||||||||||| | | || |||||||||||||||||| Sbjct: 70 cgcgtcgggttctaccagagcagctgccccaacgccgaggc 110
>emb|AJ401274.1|ZMA401274 Zea mays mRNA for peroxidase (pox1 gene) Length = 1398 Score = 50.1 bits (25), Expect = 0.003 Identities = 31/33 (93%) Strand = Plus / Plus Query: 176 ttctacaacaccacctgccccaacgccgaggcc 208 |||||| |||||| ||||||||||||||||||| Sbjct: 168 ttctacgacaccagctgccccaacgccgaggcc 200
>dbj|AK068894.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001H23, full insert sequence Length = 1382 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 167 cgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||||||||||||| | | || |||||||||||||||||| Sbjct: 177 cgcgtcgggttctaccagagcagctgccccaacgccgaggc 217
>tpe|BN000541.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx12 gene for class III peroxidase 12 precursor, exons 1-3 Length = 3928 Score = 50.1 bits (25), Expect = 0.003 Identities = 37/41 (90%) Strand = Plus / Plus Query: 167 cgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||||||||||||| | | || |||||||||||||||||| Sbjct: 70 cgcgtcgggttctaccagagcagctgccccaacgccgaggc 110
>ref|NM_183816.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1062 Score = 48.1 bits (24), Expect = 0.011 Identities = 48/56 (85%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 76 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 131
>dbj|AK099187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107P11, full insert sequence Length = 1271 Score = 48.1 bits (24), Expect = 0.011 Identities = 48/56 (85%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 146 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 201
>dbj|AK070715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full insert sequence Length = 1492 Score = 48.1 bits (24), Expect = 0.011 Identities = 48/56 (85%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 151 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 206
>dbj|AK060115.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E07, full insert sequence Length = 1008 Score = 48.1 bits (24), Expect = 0.011 Identities = 48/56 (85%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 149 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 204
>tpe|BN000544.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx15 gene for class III peroxidase 15 precursor, exons 1-3 Length = 5322 Score = 48.1 bits (24), Expect = 0.011 Identities = 48/56 (85%) Strand = Plus / Plus Query: 152 agccgcgcccagctgcgcgtcgggttctacaacaccacctgccccaacgccgaggc 207 ||||| || ||||||| || |||||||||||||| | |||||||| ||||||||| Sbjct: 76 agccgggcgcagctgcaggtggggttctacaacacgagctgccccaccgccgaggc 131
>gb|BC056999.1| Mus musculus neuropathy target esterase, mRNA (cDNA clone MGC:66981 IMAGE:6831507), complete cds Length = 4461 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 tggcggtgctgctcaccgccgtgct 129 ||||||||||| ||||||||||||| Sbjct: 289 tggcggtgctggtcaccgccgtgct 313
>gb|BC054789.1| Mus musculus neuropathy target esterase, mRNA (cDNA clone MGC:65634 IMAGE:6831507), complete cds Length = 4461 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 tggcggtgctgctcaccgccgtgct 129 ||||||||||| ||||||||||||| Sbjct: 289 tggcggtgctggtcaccgccgtgct 313
>dbj|AK162641.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830134O04 product:neuropathy target esterase, full insert sequence Length = 3840 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 tggcggtgctgctcaccgccgtgct 129 ||||||||||| ||||||||||||| Sbjct: 244 tggcggtgctggtcaccgccgtgct 268
>dbj|AK040720.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530020D05 product:neuropathy target esterase, full insert sequence Length = 2892 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 tggcggtgctgctcaccgccgtgct 129 ||||||||||| ||||||||||||| Sbjct: 325 tggcggtgctggtcaccgccgtgct 349
>dbj|AK089095.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430039F18 product:neuropathy target esterase, full insert sequence Length = 4265 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 tggcggtgctgctcaccgccgtgct 129 ||||||||||| ||||||||||||| Sbjct: 232 tggcggtgctggtcaccgccgtgct 256
>gb|AF173829.1|AF173829 Mus musculus neuropathy target esterase homolog mRNA, complete cds Length = 4459 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 tggcggtgctgctcaccgccgtgct 129 ||||||||||| ||||||||||||| Sbjct: 271 tggcggtgctggtcaccgccgtgct 295
>ref|NM_015801.1| Mus musculus neuropathy target esterase (Nte), mRNA Length = 4459 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 tggcggtgctgctcaccgccgtgct 129 ||||||||||| ||||||||||||| Sbjct: 271 tggcggtgctggtcaccgccgtgct 295
>gb|AC170806.2| Mus musculus BAC clone RP24-363P6 from chromosome 8, complete sequence Length = 182564 Score = 42.1 bits (21), Expect = 0.67 Identities = 24/25 (96%) Strand = Plus / Plus Query: 105 tggcggtgctgctcaccgccgtgct 129 ||||||||||| ||||||||||||| Sbjct: 43546 tggcggtgctggtcaccgccgtgct 43570
>gb|AY816748.1| Synthetic construct clone pcNiV-Fopt C-terminal-Au1-tagged F protein gene, complete cds Length = 1659 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 180 acaacaccacctgccccaacgccg 203 |||||||||||||||||| ||||| Sbjct: 1238 acaacaccacctgccccaccgccg 1261
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 cctggccggtctggcggtgctgct 117 ||||||||||||||| |||||||| Sbjct: 952400 cctggccggtctggccgtgctgct 952377
>gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, complete sequence Length = 178778 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 tgctgtgcctgcagctgccggtcc 149 ||||||||||||||||||| |||| Sbjct: 65419 tgctgtgcctgcagctgcccgtcc 65442
>dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-1391J07, complete sequence Length = 121103 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 tgctgtgcctgcagctgccggtcc 149 ||||||||||||||||||| |||| Sbjct: 54446 tgctgtgcctgcagctgcccgtcc 54423
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 gcggcagcctggccggtctg 106 |||||||||||||||||||| Sbjct: 4650072 gcggcagcctggccggtctg 4650053 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,435,933 Number of Sequences: 3902068 Number of extensions: 1435933 Number of successful extensions: 113525 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112959 Number of HSP's gapped (non-prelim): 566 length of query: 208 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 186 effective length of database: 17,147,199,772 effective search space: 3189379157592 effective search space used: 3189379157592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)