>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 27/51 (52%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYG 206
           MAA+TMALSSPA     +KL+ GAS V G GR+TMR           PWYG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYG 51

>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 26/51 (50%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYG 206
           MAA TMALSSP     A+KL+  AS + G GRITMR           PWYG
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYG 51

>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGASYVLGGGRITMRXXXX--XXXXXXXPWYG 206
           MAA TMALSSPA+    A+ V G GRITMR             PWYG
Sbjct: 1   MAAATMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYG 47

>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXXXXXXXPWYG 206
           MAA+TMALSS      AMKLA ++  LG GR++MR           PWYG
Sbjct: 1   MAASTMALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYG 50

>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXX-XXXXXXPWYG 206
           MAA+TMALSSP     A+KL+  AS VLG GR+TMR            PWYG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYG 52

>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPWYG 206
           MAA TMALSSP     A+KL+  A  + G GR++MR           PWYG
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYG 51

>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 25/52 (48%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +3

Query: 72  MAATTMALSSPAMK------LAGASYVLGGGRITMRXXXXX-XXXXXXPWYG 206
           MAA+TMALSSPA           AS VLG GR+TMR            PWYG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYG 52

>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor|
           (LHCII type I CAB-1C) (LHCP) (Fragments)
          Length = 265

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPW 200
           MAA TMALSSP     A+KL+  AS + G GRITMR           PW
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPW 49

>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXX--XXXXXXXPWYG 206
           MA++TMALSSP     A+KL   AS ++G GRITMR             PWYG
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYG 53

>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMR--XXXXXXXXXXXPWYG 206
           MAA+TMALSSP     A+KL+  +S + G G++TMR             PWYG
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYG 53

>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAG---ASYVLGGGRITMRXXXXX---XXXXXXPWYG 206
           MAA TMALSSP M  A    +S + G  RITMR              PWYG
Sbjct: 1   MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYG 51

>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = +3

Query: 72  MAATTMALSSPAM-----KLA-GASYVLGGGRITMRXXXXXXXXXXXPWYG 206
           MAA+TMALSSPA+     K+A  +S + G GR++MR           PWYG
Sbjct: 1   MAASTMALSSPALAGKAVKVAPSSSELFGNGRVSMR-KTVKAPVSDSPWYG 50

>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSS-----PAMKL-AGASYVLGGGRITMRXXXXXX--XXXXXPWYG 206
           MAATTMALSS      A+KL + +S + G G++TMR             PWYG
Sbjct: 1   MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYG 53

>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 35.0 bits (79), Expect = 0.054
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +3

Query: 75  AATTMALSSPAMKLAGASYVLGG-----GRITMRXXXXXXXXXXXPWYG 206
           AA++MALSSP+  LAG +  LG      GR++MR           PWYG
Sbjct: 3   AASSMALSSPS--LAGKAVKLGPSAPEVGRVSMRKTVTKQVSSGSPWYG 49

>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +3

Query: 72  MAATTMALSSPAM---KLAGASYVLGGGRITMRXXXX--XXXXXXXPWYG 206
           MAA TMA++S A+     AG   V G GRITMR             PWYG
Sbjct: 1   MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKPKPARSGSPWYG 50

>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type I CAB-1A) (LHCP) (Fragments)
          Length = 265

 Score = 34.7 bits (78), Expect = 0.070
 Identities = 23/49 (46%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXXXXXXXPW 200
           MAA  MALSSP     A+KL+  AS   G GRITMR           PW
Sbjct: 1   MAAAAMALSSPSFAGQAVKLSPSASENSGNGRITMRKAVAKSAPSSSPW 49

>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXX--XXXXXPWYG 206
           MAA TMALSSP     A+K +  +S + G G+ TMR             PWYG
Sbjct: 1   MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYG 53

>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
 Frame = +3

Query: 72  MAATTMALSSPAM-------KLAGASYVLGGGRITMRXXXXX--XXXXXXPWYG 206
           MAA++MALSSP +           +S  LGG R TMR             PWYG
Sbjct: 1   MAASSMALSSPTLTGKPVETSANPSSQELGGARFTMRKSATTKKVASSGSPWYG 54

>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGASYVLGG---GRITMRXXXX--XXXXXXXPWYG 206
           MAA+TMA+SS AM  AG    +G    GRITMR             PWYG
Sbjct: 1   MAASTMAISSTAM--AGTPIKVGSFGEGRITMRKTVGKPKVAASGSPWYG 48

>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRXXXXXX--XXXXXPWYG 206
           MAA TMA+SS      A+ +  +S + G G+ TMR             PWYG
Sbjct: 1   MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYG 52

>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRXXXXXX--XXXXXPWYG 206
           M A+TMALSSP     A+KL+  +S + G G+  MR             PWYG
Sbjct: 1   MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYG 53

>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)|
          Length = 474

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 16/61 (26%)
 Frame = -1

Query: 145 PPPRTYEAPASFIAGEESAMVVAAIAC---------CRME-------QSKLLMCGCCCD* 14
           PP  +Y  P S      S+ V+  I+          C++E       QS+   CG CC+ 
Sbjct: 377 PPTSSYVPPTSSYVPPTSSSVIVPISSSWRLPENTICQVERNSHIHPQSQSSCCGACCES 436

Query: 13  W 11
           W
Sbjct: 437 W 437


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.307    0.128    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,051,032
Number of Sequences: 219361
Number of extensions: 205424
Number of successful extensions: 458
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)