>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 46  VMEVEIR*GVCNNSPAESTSPENGWR*SARPTPGHLGERH 165
           V+ + +R G+ N SPAE+  P      S  P P HL  R+
Sbjct: 22  VVFLRLREGLKNQSPAEADKPATSTSPSCPPLPPHLPTRN 61

>SYQ_CHRVO (Q7NX86) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 560

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
 Frame = -2

Query: 81  VTHSLADFDFHDHRPA-------VLIDQHP 13
           +THSL   +F DHRP        + I+ HP
Sbjct: 227 ITHSLCSLEFEDHRPLYDWVLDNISIEHHP 256

>PGMI_AERPE (Q9YE01) Bifunctional phosphoglucose/phosphomannose isomerase|
           (Glucose-6-phosphate isomerase) (EC 5.3.1.9) (GPI)
           (Phosphoglucose isomerase) (PGI) (Mannose-6-phosphate
           isomerase) (EC 5.3.1.8) (Phosphomannose isomerase) (PMI)
          Length = 335

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 9/33 (27%)
 Frame = -2

Query: 195 RPPRPPTHR--GMALAQMAG-------CGSRAS 124
           RPPRPP HR  G+ LA  +G       CGS  S
Sbjct: 70  RPPRPPRHRGYGLVLASYSGNTLETVECGSLLS 102

>OPA1_MOUSE (P58281) Dynamin-like 120 kDa protein, mitochondrial precursor|
           (Large GTP-binding protein) (LargeG)
          Length = 960

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 41  RWS-WKSKSAKECVTTHLPNQLAPKMDGAEARDPHPAIWAS 160
           RW  WK+++ ++CV     N+L   +   +  D HPA  AS
Sbjct: 774 RWMYWKNRTQEQCVHNETKNELEKML---KVNDEHPAYLAS 811

>CYSH_NEIMA (Q9JUD5) Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8)|
           (PAPS reductase, thioredoxin dependent) (PAdoPS
           reductase) (3'-phosphoadenylylsulfate reductase) (PAPS
           sulfotransferase)
          Length = 244

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 35  AGRWSWKSKSAKEC 76
           AGRW W+ K++KEC
Sbjct: 227 AGRWWWEDKNSKEC 240

>CAP16_ARATH (Q8L936) Putative clathrin assembly protein At4g40080|
          Length = 365

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 192 PPRPPTHRGMALAQMAGCGSRASAPS 115
           P  PP +R +A+   AG GSRA+A S
Sbjct: 49  PSTPPGNRHLAVILSAGTGSRATASS 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,896,165
Number of Sequences: 219361
Number of extensions: 665357
Number of successful extensions: 1947
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)