ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet78d02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197741.1| Oryza sativa (japonica cultivar-group) putative DNA binding protein (OSJNBa0042H09.12), mRNA Length = 870 Score = 54.0 bits (27), Expect = 2e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 138 ggagctccaagaaacctcctcgtcttc 164 ||||||||||||||||||||||||||| Sbjct: 15 ggagctccaagaaacctcctcgtcttc 41
>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete sequence Length = 144191 Score = 54.0 bits (27), Expect = 2e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 138 ggagctccaagaaacctcctcgtcttc 164 ||||||||||||||||||||||||||| Sbjct: 29145 ggagctccaagaaacctcctcgtcttc 29171
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence Length = 132927 Score = 54.0 bits (27), Expect = 2e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 138 ggagctccaagaaacctcctcgtcttc 164 ||||||||||||||||||||||||||| Sbjct: 12816 ggagctccaagaaacctcctcgtcttc 12790
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 2e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 138 ggagctccaagaaacctcctcgtcttc 164 ||||||||||||||||||||||||||| Sbjct: 21580912 ggagctccaagaaacctcctcgtcttc 21580886 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 tcctcgtcgtcgacgtcgtcgtat 186 |||||||||||| ||||||||||| Sbjct: 13919330 tcctcgtcgtcgtcgtcgtcgtat 13919353
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 2e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 138 ggagctccaagaaacctcctcgtcttc 164 ||||||||||||||||||||||||||| Sbjct: 21592575 ggagctccaagaaacctcctcgtcttc 21592549 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 tcctcgtcgtcgacgtcgtcgtat 186 |||||||||||| ||||||||||| Sbjct: 13926672 tcctcgtcgtcgtcgtcgtcgtat 13926695
>ref|XM_475250.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 573 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 153 ctcctcgtcttcctcgtcgtcgacgtcgtc 182 |||||||||||||||||||||| ||||||| Sbjct: 267 ctcctcgtcttcctcgtcgtcgtcgtcgtc 296
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 153 ctcctcgtcttcctcgtcgtcgacgtcgtc 182 |||||||||||||||||||||| ||||||| Sbjct: 101776 ctcctcgtcttcctcgtcgtcgtcgtcgtc 101805
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 153 ctcctcgtcttcctcgtcgtcgacgtcgtc 182 |||||||||||||||||||||| ||||||| Sbjct: 44357 ctcctcgtcttcctcgtcgtcgtcgtcgtc 44386
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.001 Identities = 29/30 (96%) Strand = Plus / Plus Query: 153 ctcctcgtcttcctcgtcgtcgacgtcgtc 182 |||||||||||||||||||||| ||||||| Sbjct: 20788552 ctcctcgtcttcctcgtcgtcgtcgtcgtc 20788581
>gb|AC166487.6| Mus musculus chromosome 1, clone RP23-298A7, complete sequence Length = 187404 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 152 cctcctcgtcttcctcgtcgtcgacgtcgtcgt 184 |||||||||| |||||||||||| ||||||||| Sbjct: 114762 cctcctcgtcctcctcgtcgtcgtcgtcgtcgt 114794
>ref|XM_512241.1| PREDICTED: Pan troglodytes similar to methyl-CpG binding domain protein 3 (LOC455554), mRNA Length = 936 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 876 cctcctcgtcttcctcgtcgtcg 854
>gb|BC009438.1| Homo sapiens methyl-CpG binding domain protein 3, mRNA (cDNA clone IMAGE:3508344), partial cds Length = 2205 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 478 cctcctcgtcttcctcgtcgtcg 456
>gb|BC032443.1| Homo sapiens methyl-CpG binding domain protein 3, mRNA (cDNA clone IMAGE:5123212), partial cds Length = 2043 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 467 cctcctcgtcttcctcgtcgtcg 445
>gb|BC009372.1| Homo sapiens methyl-CpG binding domain protein 3, mRNA (cDNA clone MGC:16640 IMAGE:4122128), complete cds Length = 2347 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 795 cctcctcgtcttcctcgtcgtcg 773
>gb|BC043619.1| Homo sapiens methyl-CpG binding domain protein 3, mRNA (cDNA clone MGC:50958 IMAGE:6156267), complete cds Length = 2360 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 813 cctcctcgtcttcctcgtcgtcg 791
>emb|CR618268.1| full-length cDNA clone CS0DL009YL06 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1541 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 717 cctcctcgtcttcctcgtcgtcg 695
>dbj|AK021532.1| Homo sapiens cDNA FLJ11470 fis, clone HEMBA1001672, highly similar to Homo sapiens methyl-CpG binding domain-containing protein MBD3 (MBD3) mRNA Length = 2142 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 613 cctcctcgtcttcctcgtcgtcg 591
>dbj|AK001474.1| Homo sapiens cDNA FLJ10612 fis, clone NT2RP2005358, highly similar to Homo sapiens methyl-CpG binding domain-containing protein MBD3 mRNA Length = 2198 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 659 cctcctcgtcttcctcgtcgtcg 637
>ref|NM_003926.5| Homo sapiens methyl-CpG binding domain protein 3 (MBD3), mRNA Length = 2559 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 851 cctcctcgtcttcctcgtcgtcg 829
>emb|BX931485.2| Gallus gallus finished cDNA, clone ChEST398j6 Length = 949 Score = 46.1 bits (23), Expect = 0.057 Identities = 29/31 (93%) Strand = Plus / Minus Query: 154 tcctcgtcttcctcgtcgtcgacgtcgtcgt 184 |||||||| |||||||||||| ||||||||| Sbjct: 184 tcctcgtcgtcctcgtcgtcgtcgtcgtcgt 154
>ref|NM_001011629.1| Apis mellifera putative transcription factor mblk-1 (Mblk-1), mRNA Length = 14440 Score = 46.1 bits (23), Expect = 0.057 Identities = 29/31 (93%) Strand = Plus / Minus Query: 154 tcctcgtcttcctcgtcgtcgacgtcgtcgt 184 ||||||||||| ||||||||| ||||||||| Sbjct: 130 tcctcgtcttcgtcgtcgtcgtcgtcgtcgt 100
>gb|AF072247.1|AF072247 Homo sapiens methyl-CpG binding domain-containing protein MBD3 (MBD3) mRNA, complete cds Length = 2392 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 852 cctcctcgtcttcctcgtcgtcg 830
>gb|AC005943.1|AC005943 Homo sapiens chromosome 19, cosmid R30538, complete sequence Length = 42301 Score = 46.1 bits (23), Expect = 0.057 Identities = 23/23 (100%) Strand = Plus / Plus Query: 152 cctcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||||| Sbjct: 19017 cctcctcgtcttcctcgtcgtcg 19039
>dbj|AB047034.1| Apis mellifera mblk-1 mRNA, complete cds Length = 14440 Score = 46.1 bits (23), Expect = 0.057 Identities = 29/31 (93%) Strand = Plus / Minus Query: 154 tcctcgtcttcctcgtcgtcgacgtcgtcgt 184 ||||||||||| ||||||||| ||||||||| Sbjct: 130 tcctcgtcttcgtcgtcgtcgtcgtcgtcgt 100
>ref|XM_518822.1| PREDICTED: Pan troglodytes similar to AT rich interactive domain 1B (SWI1-like) isoform 3; BRG1-binding protein ELD/OSA1; Eld (eyelid)/Osa protein (LOC463090), mRNA Length = 5292 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtc 173 |||||||||||||||||||||| Sbjct: 3781 cctcctcgtcttcctcgtcgtc 3760
>gb|AC006716.1| Caenorhabditis elegans cosmid Y13C8A, complete sequence Length = 6561 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 159 gtcttcctcgtcgtcgacgtcgtcgt 184 |||||||||||||||| ||||||||| Sbjct: 2478 gtcttcctcgtcgtcgtcgtcgtcgt 2453
>gb|AF521671.1| Homo sapiens SWI/SNF chromatin remodeling complex subunit OSA2 (OSA2) mRNA, partial cds Length = 7757 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtc 173 |||||||||||||||||||||| Sbjct: 4987 cctcctcgtcttcctcgtcgtc 4966
>ref|NM_017519.1| Homo sapiens AT rich interactive domain 1B (SWI1-like) (ARID1B), transcript variant 1, mRNA Length = 8246 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtc 173 |||||||||||||||||||||| Sbjct: 5337 cctcctcgtcttcctcgtcgtc 5316
>ref|NM_020732.2| Homo sapiens AT rich interactive domain 1B (SWI1-like) (ARID1B), transcript variant 2, mRNA Length = 8126 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtc 173 |||||||||||||||||||||| Sbjct: 5217 cctcctcgtcttcctcgtcgtc 5196
>ref|XM_546592.2| PREDICTED: Canis familiaris similar to Zinc finger and BTB domain containing protein 4 (KAISO-like zinc finger protein 1) (KAISO-L1) (LOC489474), mRNA Length = 4845 Score = 44.1 bits (22), Expect = 0.22 Identities = 28/30 (93%) Strand = Plus / Minus Query: 155 cctcgtcttcctcgtcgtcgacgtcgtcgt 184 ||||||| |||||||||||| ||||||||| Sbjct: 3721 cctcgtcgtcctcgtcgtcgtcgtcgtcgt 3692
>ref|NM_175863.2| Homo sapiens AT rich interactive domain 1B (SWI1-like) (ARID1B), transcript variant 3, mRNA Length = 8087 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtc 173 |||||||||||||||||||||| Sbjct: 5178 cctcctcgtcttcctcgtcgtc 5157
>emb|AL591545.6| Human DNA sequence from clone RP11-419L10 on chromosome 6q25.2-26 Contains the 3' end of the gene for BRG1-binding protein ELD/OSA1 (p250R KIAA1235) (FLJ22292), complete sequence Length = 41211 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtc 173 |||||||||||||||||||||| Sbjct: 27768 cctcctcgtcttcctcgtcgtc 27747
>gb|AF259792.1| Homo sapiens p250R mRNA, complete cds Length = 5123 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtc 173 |||||||||||||||||||||| Sbjct: 3142 cctcctcgtcttcctcgtcgtc 3121
>gb|AF468300.1| Homo sapiens BRG1-binding protein ELD/OSA1 mRNA, complete cds Length = 5482 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtc 173 |||||||||||||||||||||| Sbjct: 3769 cctcctcgtcttcctcgtcgtc 3748
>ref|NM_001029781.1| Caenorhabditis elegans Y13C8A.2 (Y13C8A.2) mRNA, complete cds Length = 350 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 159 gtcttcctcgtcgtcgacgtcgtcgt 184 |||||||||||||||| ||||||||| Sbjct: 180 gtcttcctcgtcgtcgtcgtcgtcgt 155
>gb|AF253515.1| Homo sapiens BAF250b subunit mRNA, complete cds Length = 6361 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtc 173 |||||||||||||||||||||| Sbjct: 4394 cctcctcgtcttcctcgtcgtc 4373
>dbj|AB033061.1| Homo sapiens mRNA for KIAA1235 protein, partial cds Length = 5834 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtc 173 |||||||||||||||||||||| Sbjct: 2947 cctcctcgtcttcctcgtcgtc 2926
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 cctcctcgtcttcctcgtcgt 172 ||||||||||||||||||||| Sbjct: 927429 cctcctcgtcttcctcgtcgt 927449
>ref|XM_549300.2| PREDICTED: Canis familiaris similar to leucine zipper, down-regulated in cancer 1 (LOC492180), mRNA Length = 405 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Minus Query: 160 tcttcctcgtcgtcgacgtcgtcgt 184 ||||||||||||||| ||||||||| Sbjct: 395 tcttcctcgtcgtcgtcgtcgtcgt 371
>ref|XM_753333.1| Ustilago maydis 521 hypothetical protein (UM02279.1) partial mRNA Length = 3786 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Minus Query: 160 tcttcctcgtcgtcgacgtcgtcgt 184 ||||||||||||||| ||||||||| Sbjct: 1925 tcttcctcgtcgtcgtcgtcgtcgt 1901
>gb|AC131744.3| Mus musculus BAC clone RP23-50E10 from chromosome 3, complete sequence Length = 225416 Score = 42.1 bits (21), Expect = 0.88 Identities = 27/29 (93%) Strand = Plus / Minus Query: 156 ctcgtcttcctcgtcgtcgacgtcgtcgt 184 |||||| |||||||||||| ||||||||| Sbjct: 16582 ctcgtcgtcctcgtcgtcgtcgtcgtcgt 16554
>ref|XM_804696.1| Trypanosoma cruzi strain CL Brener nucleosome assembly protein (Tc00.1047053507963.79) partial mRNA Length = 1089 Score = 42.1 bits (21), Expect = 0.88 Identities = 30/33 (90%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcgacgtcgtcgt 184 ||||||| || |||||||||||| ||||||||| Sbjct: 973 cctcctcctcctcctcgtcgtcgtcgtcgtcgt 941
>emb|AL604028.15| Human DNA sequence from clone RP11-767N6 on chromosome 1 Contains the gene for a novel protein (SP192) (DKFZp434H1428, FLJ21319), a ribosomal protein S15a (RPS15A) pseudogene, a ribosomal protein L7a (RPL7A) pseudogene, the gene for a novel protein (FLJ21029) and one CpG island, complete sequence Length = 82964 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 cacacacaccaccgcaccgca 24 ||||||||||||||||||||| Sbjct: 60609 cacacacaccaccgcaccgca 60629
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 tcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||| Sbjct: 2698376 tcctcgtcttcctcgtcgtcg 2698356
>ref|XM_504161.1| Yarrowia lipolytica CLIB122, YALI0E19767g predicted mRNA Length = 3735 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Minus Query: 158 cgtcttcctcgtcgtcgacgtcgtc 182 ||||||||||||||||| ||||||| Sbjct: 2644 cgtcttcctcgtcgtcgtcgtcgtc 2620
>gb|AC160764.2| Ornithorhynchus anatinus BAC clone OABb-454A1 from chromosome unknown, complete sequence Length = 125050 Score = 42.1 bits (21), Expect = 0.88 Identities = 30/33 (90%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcgacgtcgtcgt 184 |||| ||||| |||||||||||| ||||||||| Sbjct: 28840 cctcgtcgtcgtcctcgtcgtcgtcgtcgtcgt 28808
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 tcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||| Sbjct: 5667379 tcctcgtcttcctcgtcgtcg 5667359 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccacgtccatgtcgtgctcg 216 |||||||||||||||||||| Sbjct: 4246954 ccacgtccatgtcgtgctcg 4246935
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 tcctcgtcttcctcgtcgtcg 174 ||||||||||||||||||||| Sbjct: 2001363 tcctcgtcttcctcgtcgtcg 2001383
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 0.88 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 ctcctcgtcttcctcgtcgtc 173 ||||||||||||||||||||| Sbjct: 1627301 ctcctcgtcttcctcgtcgtc 1627281
>gb|AC130723.4| Mus musculus BAC clone RP24-409P7 from 8, complete sequence Length = 197951 Score = 42.1 bits (21), Expect = 0.88 Identities = 30/33 (90%) Strand = Plus / Plus Query: 152 cctcctcgtcttcctcgtcgtcgacgtcgtcgt 184 ||||||| || |||||||||||| ||||||||| Sbjct: 78899 cctcctcctcctcctcgtcgtcgtcgtcgtcgt 78931
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Minus Query: 158 cgtcttcctcgtcgtcgacgtcgtc 182 ||||||||||||||||| ||||||| Sbjct: 2362768 cgtcttcctcgtcgtcgtcgtcgtc 2362744
>dbj|AP004782.3| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-103B16, complete sequence Length = 119191 Score = 42.1 bits (21), Expect = 0.88 Identities = 24/25 (96%) Strand = Plus / Minus Query: 160 tcttcctcgtcgtcgacgtcgtcgt 184 ||||||||||||||| ||||||||| Sbjct: 102596 tcttcctcgtcgtcgtcgtcgtcgt 102572
>ref|NM_196479.1| Oryza sativa (japonica cultivar-group) putative prolyl 4-hydroxylase alpha subunit-like protein (OSJNBa0045B21.12), mRNA Length = 759 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 163 tcctcgtcgtcgacgtcgtcgtat 186 |||||||||||| ||||||||||| Sbjct: 572 tcctcgtcgtcgtcgtcgtcgtat 549
>ref|NM_190214.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 795 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcg 171 |||||||||||||||||||| Sbjct: 595 cctcctcgtcttcctcgtcg 576
>ref|XM_472326.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 618 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 161 cttcctcgtcgtcgacgtcgtcgt 184 |||||||||||||| ||||||||| Sbjct: 304 cttcctcgtcgtcgtcgtcgtcgt 281
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC nbxb0045B21, complete sequence Length = 152397 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 163 tcctcgtcgtcgacgtcgtcgtat 186 |||||||||||| ||||||||||| Sbjct: 87956 tcctcgtcgtcgtcgtcgtcgtat 87979
>ref|XM_429637.1| PREDICTED: Gallus gallus hypothetical gene supported by BX930516 (LOC419202), mRNA Length = 1511 Score = 40.1 bits (20), Expect = 3.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 153 ctcctcgtcttcctcgtcgtcgacgtcgtcgt 184 |||||| || |||||||||||| ||||||||| Sbjct: 702 ctcctcctcgtcctcgtcgtcgtcgtcgtcgt 671
>ref|XM_324143.1| Neurospora crassa OR74A hypothetical protein (NCU04787.1) partial mRNA Length = 1911 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 agaaacctcctcgtcttcctcgtc 170 |||| ||||||||||||||||||| Sbjct: 654 agaatcctcctcgtcttcctcgtc 631
>ref|XM_955320.1| Neurospora crassa OR74A hypothetical protein (NCU04787.1) partial mRNA Length = 1911 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 agaaacctcctcgtcttcctcgtc 170 |||| ||||||||||||||||||| Sbjct: 654 agaatcctcctcgtcttcctcgtc 631
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tcctcgtcgtcgacgtcgtc 182 |||||||||||||||||||| Sbjct: 3992589 tcctcgtcgtcgacgtcgtc 3992608
>ref|XM_751747.1| Ustilago maydis 521 hypothetical protein (UM00693.1) partial mRNA Length = 4920 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 tcctcgtcttcctcgtcgtc 173 |||||||||||||||||||| Sbjct: 1880 tcctcgtcttcctcgtcgtc 1861
>ref|XM_755863.1| Ustilago maydis 521 hypothetical protein (UM04809.1) partial mRNA Length = 1827 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 tcctcgtcttcctcgtcgtc 173 |||||||||||||||||||| Sbjct: 896 tcctcgtcttcctcgtcgtc 877
>ref|XM_382295.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02119.1) partial mRNA Length = 879 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 tcttcctcgtcgtcgacgtcgtcg 183 |||||||||||||||| ||||||| Sbjct: 410 tcttcctcgtcgtcgatgtcgtcg 433
>ref|XM_812168.1| Trypanosoma cruzi strain CL Brener nucleosome assembly protein (Tc00.1047053507031.29) partial mRNA Length = 1089 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcgacgtc 179 |||||||||| |||||||||||| |||| Sbjct: 964 cctcctcgtcctcctcgtcgtcgtcgtc 937
>emb|CR729955.2|CNS0GQ6H Tetraodon nigroviridis full-length cDNA Length = 1224 Score = 40.1 bits (20), Expect = 3.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcgacgtcgtcg 183 ||||||||||||| ||||||||| | |||||| Sbjct: 681 cctcctcgtcttcgtcgtcgtcgtcatcgtcg 650
>emb|CR722913.2|CNS0GKQV Tetraodon nigroviridis full-length cDNA Length = 1097 Score = 40.1 bits (20), Expect = 3.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcgacgtcgtcg 183 ||||||||||||| ||||||||| | |||||| Sbjct: 614 cctcctcgtcttcgtcgtcgtcgtcatcgtcg 583
>emb|CR705641.2|CNS0G7F9 Tetraodon nigroviridis full-length cDNA Length = 818 Score = 40.1 bits (20), Expect = 3.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcgtcgacgtcgtcg 183 ||||||||||||| ||||||||| | |||||| Sbjct: 334 cctcctcgtcttcgtcgtcgtcgtcatcgtcg 303
>ref|XM_506093.1| Yarrowia lipolytica CLIB122, YALI0F31383g predicted mRNA Length = 1260 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 tcctcgtcttcctcgtcgtc 173 |||||||||||||||||||| Sbjct: 1136 tcctcgtcttcctcgtcgtc 1117
>gb|BT008938.1| Triticum aestivum clone wdi1c.pk004.j19:fis, full insert mRNA sequence Length = 1385 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 gaaacctcctcgtcttcctcgtcg 171 ||||||||||| |||||||||||| Sbjct: 934 gaaacctcctcctcttcctcgtcg 911
>emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone B15B10 Length = 77986 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 agaaacctcctcgtcttcctcgtc 170 |||| ||||||||||||||||||| Sbjct: 1624 agaatcctcctcgtcttcctcgtc 1601
>emb|CR382340.7| Zebrafish DNA sequence from clone DKEY-151G10 in linkage group 23, complete sequence Length = 158509 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 ccaaggcggagcagcagcga 47 |||||||||||||||||||| Sbjct: 132752 ccaaggcggagcagcagcga 132733
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 cctcgtcttcctcgtcgtcg 174 |||||||||||||||||||| Sbjct: 892119 cctcgtcttcctcgtcgtcg 892138
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 ccacgtccatgtcgtgctcg 216 |||||||||||||||||||| Sbjct: 1613322 ccacgtccatgtcgtgctcg 1613341
>dbj|AB174734.1| Oecophylla smaragdina DNA, microsatellite locus 2-14 Length = 235 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 157 tcgtcttcctcgtcgtcgacgtcgtcgt 184 ||||| || ||||||||||||||||||| Sbjct: 71 tcgtcgtcgtcgtcgtcgacgtcgtcgt 44
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 tcctcgtcgtcgacgtcgtc 182 |||||||||||||||||||| Sbjct: 106779 tcctcgtcgtcgacgtcgtc 106760
>ref|XM_681583.1| PREDICTED: Danio rerio similar to Serine/threonine-protein kinase WNK3 (Protein kinase with no lysine 3) (Protein kinase, lysine-deficient 3) (LOC558381), mRNA Length = 2325 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 ccaaggcggagcagcagcga 47 |||||||||||||||||||| Sbjct: 614 ccaaggcggagcagcagcga 633
>ref|XM_393999.2| PREDICTED: Apis mellifera similar to ENSANGP00000025275 (LOC410520), mRNA Length = 1221 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 157 tcgtcttcctcgtcgtcgacgtcgtcgt 184 ||||| |||||||||||| ||||||||| Sbjct: 103 tcgtcctcctcgtcgtcgtcgtcgtcgt 130
>ref|XM_397501.2| PREDICTED: Apis mellifera hypothetical LOC408473 (LOC408473), mRNA Length = 1730 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 156 ctcgtcttcctcgtcgtcgacgtcgtcg 183 |||||| |||||||||||| |||||||| Sbjct: 589 ctcgtcgtcctcgtcgtcgtcgtcgtcg 562
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 cttcctcgtcgtcgacgtcgtcgt 184 |||||||||||||| ||||||||| Sbjct: 19492631 cttcctcgtcgtcgtcgtcgtcgt 19492654
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gctagcttgcagcagcaaag 69 |||||||||||||||||||| Sbjct: 18531435 gctagcttgcagcagcaaag 18531454 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 acctcctcgtcttcctcgtc 170 |||||||||||||||||||| Sbjct: 16089715 acctcctcgtcttcctcgtc 16089734
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cctcgtcgtcgacgtcgtcg 183 |||||||||||||||||||| Sbjct: 21597009 cctcgtcgtcgacgtcgtcg 21596990
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tcctcgtcgtcgacgtcgtc 182 |||||||||||||||||||| Sbjct: 3992700 tcctcgtcgtcgacgtcgtc 3992719
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cctcctcgtcttcctcgtcg 171 |||||||||||||||||||| Sbjct: 38680696 cctcctcgtcttcctcgtcg 38680715
>emb|AL662997.3|OSJN00205 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039F02, complete sequence Length = 122499 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 161 cttcctcgtcgtcgacgtcgtcgt 184 |||||||||||||| ||||||||| Sbjct: 13278 cttcctcgtcgtcgtcgtcgtcgt 13301
>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1099D03 Length = 191022 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cctcctcgtcttcctcgtcg 171 |||||||||||||||||||| Sbjct: 138669 cctcctcgtcttcctcgtcg 138688
>dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1328_D07 Length = 155007 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 acctcctcgtcttcctcgtc 170 |||||||||||||||||||| Sbjct: 89928 acctcctcgtcttcctcgtc 89947
>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0708B04 Length = 170523 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cctcgtcgtcgacgtcgtcg 183 |||||||||||||||||||| Sbjct: 57183 cctcgtcgtcgacgtcgtcg 57164
>ref|XM_314082.2| Anopheles gambiae str. PEST ENSANGP00000010404 (ENSANGG00000007915), partial mRNA Length = 972 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 152 cctcctcgtcttcctcgtcgtcgacgtc 179 |||||||||| |||||||||||| |||| Sbjct: 395 cctcctcgtcgtcctcgtcgtcgtcgtc 422
>dbj|AK111169.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-C12, full insert sequence Length = 3063 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cctcgtcgtcgacgtcgtcg 183 |||||||||||||||||||| Sbjct: 1819 cctcgtcgtcgacgtcgtcg 1800
>dbj|AK104708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E07, full insert sequence Length = 1312 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcg 171 |||||||||||||||||||| Sbjct: 661 cctcctcgtcttcctcgtcg 642
>dbj|AK070087.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042J18, full insert sequence Length = 1353 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cctcctcgtcttcctcgtcg 171 |||||||||||||||||||| Sbjct: 662 cctcctcgtcttcctcgtcg 643
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 cctcgtcttcctcgtcgtcg 174 |||||||||||||||||||| Sbjct: 2376880 cctcgtcttcctcgtcgtcg 2376861
>dbj|AB091104.1| Marchantia polymorpha mRNA for ftsZ2, complete cds Length = 2137 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 aggcggagcagcagcgagag 50 |||||||||||||||||||| Sbjct: 26 aggcggagcagcagcgagag 45
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 tcctcgtcttcctcgtcgtc 173 |||||||||||||||||||| Sbjct: 398254 tcctcgtcttcctcgtcgtc 398235
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tcctcgtcttcctcgtcgtc 173 |||||||||||||||||||| Sbjct: 3903669 tcctcgtcttcctcgtcgtc 3903688
>emb|X55067.1|HSEAR1 Homo sapiens partial ear-1 gene, exon HR2 Length = 1963 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tcctcgtcttcctcgtcgtc 173 |||||||||||||||||||| Sbjct: 1818 tcctcgtcttcctcgtcgtc 1837 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,410,855 Number of Sequences: 3902068 Number of extensions: 2410855 Number of successful extensions: 53768 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52638 Number of HSP's gapped (non-prelim): 1129 length of query: 269 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 247 effective length of database: 17,147,199,772 effective search space: 4235358343684 effective search space used: 4235358343684 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
