ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet77g04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence Length = 439641 Score = 48.1 bits (24), Expect = 0.027 Identities = 24/24 (100%) Strand = Plus / Minus Query: 189 ctcgccgtcgccgtcctcctcgcc 212 |||||||||||||||||||||||| Sbjct: 216841 ctcgccgtcgccgtcctcctcgcc 216818 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cctcgccgtcgccgtcctcctcgcc 212 |||||||| |||||||||||||||| Sbjct: 273622 cctcgccgccgccgtcctcctcgcc 273646 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 188 cctcgccgtcgccgtcctcctcgcc 212 |||||||||||||||||| |||||| Sbjct: 188574 cctcgccgtcgccgtcctgctcgcc 188550
>ref|XM_481351.1| Oryza sativa (japonica cultivar-group), mRNA Length = 784 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cctcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||||| Sbjct: 354 cctcgccgtcgccgtcctcctcg 332
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 190 tcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||||||||| Sbjct: 7126023 tcgccgtcgccgtcctcctcgcc 7126045 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||| Sbjct: 19387621 tcgccgtcgccgtcctcctcg 19387601 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cctcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||| ||||||| Sbjct: 18321069 cctcgccgtcgccgtccacctcgcc 18321093 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||| Sbjct: 13955442 tcgccgtcgccgtcctcctcg 13955422
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 188 cctcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||||| Sbjct: 11766924 cctcgccgtcgccgtcctcctcg 11766946
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 342 accgtcgcgctcgccgcctgcgc 364 ||||||||||||||||||||||| Sbjct: 4763347 accgtcgcgctcgccgcctgcgc 4763325
>dbj|AP005390.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0075O18 Length = 125411 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 188 cctcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||||| Sbjct: 96624 cctcgccgtcgccgtcctcctcg 96646
>dbj|AP004756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0592C05 Length = 150478 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 190 tcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||||||||| Sbjct: 78102 tcgccgtcgccgtcctcctcgcc 78124
>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_A03 Length = 168689 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 188 cctcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||||| Sbjct: 45209 cctcgccgtcgccgtcctcctcg 45231
>dbj|AK121536.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031D23, full insert sequence Length = 2052 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 190 tcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||||||||| Sbjct: 498 tcgccgtcgccgtcctcctcgcc 520
>dbj|AK072208.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013165E01, full insert sequence Length = 2795 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cctcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||||| Sbjct: 2428 cctcgccgtcgccgtcctcctcg 2406
>dbj|AK071000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075F10, full insert sequence Length = 786 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 188 cctcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||||| Sbjct: 355 cctcgccgtcgccgtcctcctcg 333
>dbj|AK070245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044M15, full insert sequence Length = 1885 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 190 tcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||||||||| Sbjct: 228 tcgccgtcgccgtcctcctcgcc 250
>gb|BC012849.1| Mus musculus heterogeneous nuclear ribonucleoprotein L-like, mRNA (cDNA clone MGC:8069 IMAGE:3587716), complete cds Length = 3017 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 454 caccttcgccttcctcgccgtcgccg 429
>gb|AC122253.5| Mus musculus BAC clone RP23-171K3 from chromosome 17, complete sequence Length = 197161 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 167732 caccttcgccttcctcgccgtcgccg 167757
>ref|NM_144802.2| Mus musculus heterogeneous nuclear ribonucleoprotein L-like (Hnrpll), mRNA Length = 3017 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 454 caccttcgccttcctcgccgtcgccg 429
>dbj|AK135533.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820445G08 product:hypothetical Glycine-rich region profile containing protein, full insert sequence Length = 3014 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 517 caccttcgccttcctcgccgtcgccg 492
>dbj|AK146879.1| Mus musculus 16 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920068B05 product:BLOCK24 variant homolog [Homo sapiens], full insert sequence Length = 2156 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 479 caccttcgccttcctcgccgtcgccg 454
>dbj|AK160943.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4021404M23 product:Weakly similar to RNA-binding protein XLHNRNPL homolog [Mus musculus], full insert sequence Length = 2766 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 444 caccttcgccttcctcgccgtcgccg 419
>dbj|AK171091.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630223G06 product:Weakly similar to RNA-binding protein XLHNRNPL, full insert sequence Length = 4651 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 385 caccttcgccttcctcgccgtcgccg 360
>dbj|AK012866.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810036L13 product:SIMILAR TO SMOOTH homolog [Mus musculus], full insert sequence Length = 1908 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 233 caccttcgccttcctcgccgtcgccg 208
>dbj|AK034860.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430049I24 product:weakly similar to RNA-BINDING PROTEIN XLHNRNPL (FRAGMENT) [Xenopus laevis], full insert sequence Length = 2509 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 462 caccttcgccttcctcgccgtcgccg 437
>dbj|AK048900.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230079O04 product:weakly similar to RNA-BINDING PROTEIN XLHNRNPL (FRAGMENT) [Xenopus laevis], full insert sequence Length = 2829 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 306 caccttcgccttcctcgccgtcgccg 281
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 392 gctcgccgagctcctccgcggc 413 |||||||||||||||||||||| Sbjct: 8002488 gctcgccgagctcctccgcggc 8002467 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 344 cgtcgcgctcgccgcctgcgccacgctc 371 |||||||||||||||| |||||||||| Sbjct: 4319050 cgtcgcgctcgccgccgccgccacgctc 4319077
>gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome 17, complete sequence Length = 157937 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 176 caccttcgcctccctcgccgtcgccg 201 ||||||||||| |||||||||||||| Sbjct: 139344 caccttcgccttcctcgccgtcgccg 139319
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 392 gctcgccgagctcctccgcggc 413 |||||||||||||||||||||| Sbjct: 40685 gctcgccgagctcctccgcggc 40664
>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0418E08 Length = 141040 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 392 gctcgccgagctcctccgcggc 413 |||||||||||||||||||||| Sbjct: 118847 gctcgccgagctcctccgcggc 118826
>gb|AF052745.1|AF052745 Oerskovia xanthineolytica beta-1,3-glucanase II (bglII) gene, complete cds Length = 1627 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 368 gctccgcggcgaccggccgcgc 389 |||||||||||||||||||||| Sbjct: 1513 gctccgcggcgaccggccgcgc 1534
>gb|AY443099.2| Haloarcula sp. AS7094 plasmid pSCM201, complete sequence Length = 3463 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 189 ctcgccgtcgccgtcctcctcg 210 |||||||||||||||||||||| Sbjct: 2217 ctcgccgtcgccgtcctcctcg 2196
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||| Sbjct: 106847 tcgccgtcgccgtcctcctcg 106827
>ref|XM_470808.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1131 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 178 ccttcgcctccctcgccgtcgccgtcctc 206 |||||||||||||||||| |||| ||||| Sbjct: 120 ccttcgcctccctcgccgacgccctcctc 148
>ref|XM_470807.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1231 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 178 ccttcgcctccctcgccgtcgccgtcctc 206 |||||||||||||||||| |||| ||||| Sbjct: 152 ccttcgcctccctcgccgacgccctcctc 180
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 434 cttcgccggcgccgcgctggtcgctgctg 462 ||||| |||||||||| |||||||||||| Sbjct: 847876 cttcgacggcgccgcgatggtcgctgctg 847848
>gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0087D01, complete sequence Length = 83225 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 tcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||| Sbjct: 27038 tcgccgtcgccgtcctcctcg 27058
>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0073M15, complete sequence Length = 143071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 190 tcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||| Sbjct: 105937 tcgccgtcgccgtcctcctcg 105957
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 178 ccttcgcctccctcgccgtcgccgtcctc 206 |||||||||||||||||| |||| ||||| Sbjct: 15487248 ccttcgcctccctcgccgacgccctcctc 15487276
>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete sequence Length = 164705 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 178 ccttcgcctccctcgccgtcgccgtcctc 206 |||||||||||||||||| |||| ||||| Sbjct: 14278 ccttcgcctccctcgccgacgccctcctc 14250
>dbj|AB110190.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 17YPR003 Length = 1231 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 178 ccttcgcctccctcgccgtcgccgtcctc 206 |||||||||||||||||| |||| ||||| Sbjct: 145 ccttcgcctccctcgccgacgccctcctc 173
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 347 cgcgctcgccgcctgcgccacgctc 371 |||| |||||||||||||||||||| Sbjct: 2678016 cgcgatcgccgcctgcgccacgctc 2677992
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 442 gcgccgcgctggtcgctgctg 462 ||||||||||||||||||||| Sbjct: 1049053 gcgccgcgctggtcgctgctg 1049073
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 gccaccgtcgcgctcgccgcc 359 ||||||||||||||||||||| Sbjct: 122881 gccaccgtcgcgctcgccgcc 122861
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 178 ccttcgcctccctcgccgtcgccgtcctc 206 |||||||||||||||||| |||| ||||| Sbjct: 15481782 ccttcgcctccctcgccgacgccctcctc 15481810
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 188 cctcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||||| ||||| Sbjct: 22392552 cctcgccgtcgccgtcctcgtcgcc 22392528
>dbj|AP006161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1267B06 Length = 156989 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 188 cctcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||||| ||||| Sbjct: 151196 cctcgccgtcgccgtcctcgtcgcc 151172
>dbj|AP003999.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_A05 Length = 113326 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 188 cctcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||||| ||||| Sbjct: 48771 cctcgccgtcgccgtcctcgtcgcc 48747
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cctcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||| ||||||| Sbjct: 35805 cctcgccgtcgccgtccacctcgcc 35829
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0435D08 Length = 148912 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||| Sbjct: 109119 tcgccgtcgccgtcctcctcg 109099
>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0650H04 Length = 134533 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tcgccgtcgccgtcctcctcg 210 ||||||||||||||||||||| Sbjct: 57916 tcgccgtcgccgtcctcctcg 57896
>dbj|AK120486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013113P19, full insert sequence Length = 2206 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cctcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||||| ||||| Sbjct: 813 cctcgccgtcgccgtcctcgtcgcc 837
>dbj|AK110348.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-G12, full insert sequence Length = 929 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 188 cctcgccgtcgccgtcctcctcgcc 212 ||||||||||||||||| ||||||| Sbjct: 25 cctcgccgtcgccgtccacctcgcc 49
>dbj|AK103600.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133F17, full insert sequence Length = 1286 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 178 ccttcgcctccctcgccgtcgccgtcctc 206 |||||||||||||||||| |||| ||||| Sbjct: 147 ccttcgcctccctcgccgacgccctcctc 175
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 cgctcgccgcctgcgccacgc 369 ||||||||||||||||||||| Sbjct: 547996 cgctcgccgcctgcgccacgc 547976
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 ccgtcgcgctcgccgcctgcg 363 ||||||||||||||||||||| Sbjct: 1391869 ccgtcgcgctcgccgcctgcg 1391849
>ref|NM_188529.1| Oryza sativa (japonica cultivar-group), Ozsa8198 predicted mRNA Length = 2349 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cgccgtcgccgtcctcctcg 210 |||||||||||||||||||| Sbjct: 393 cgccgtcgccgtcctcctcg 412
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cgtcgcgctcgccgcctgcg 363 |||||||||||||||||||| Sbjct: 1149724 cgtcgcgctcgccgcctgcg 1149705
>ref|XM_475336.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1170 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cgccgtcgccgtcctcctcg 210 |||||||||||||||||||| Sbjct: 104 cgccgtcgccgtcctcctcg 123
>ref|XM_462699.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 5127 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 384 ccgcgctcgctcgccgagctcctccgcg 411 |||||||||| || |||||||||||||| Sbjct: 135 ccgcgctcgcgcggcgagctcctccgcg 162
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 gccaccgtcgcgctcgccgc 358 |||||||||||||||||||| Sbjct: 1020411 gccaccgtcgcgctcgccgc 1020430
>ref|XM_476867.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2122 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 344 cgtcgcgctcgccgcctgcgccacgctc 371 |||||||||||||||| |||||||||| Sbjct: 1738 cgtcgcgctcgccgccgccgccacgctc 1765
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gctcgccgagctcctccgcg 411 |||||||||||||||||||| Sbjct: 101292 gctcgccgagctcctccgcg 101311
>gb|AC137611.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0020H14, complete sequence Length = 185623 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cgccgtcgccgtcctcctcg 210 |||||||||||||||||||| Sbjct: 146362 cgccgtcgccgtcctcctcg 146381
>gb|CP000145.1| Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence Length = 114178 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cgccgcgctggtcgctgctg 462 |||||||||||||||||||| Sbjct: 5491 cgccgcgctggtcgctgctg 5510
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 gctcgccgcctgcgccacgc 369 |||||||||||||||||||| Sbjct: 2427207 gctcgccgcctgcgccacgc 2427226
>gb|AC138195.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0005P21, complete sequence Length = 147381 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 cgctcgccgagctcctccgc 410 |||||||||||||||||||| Sbjct: 76833 cgctcgccgagctcctccgc 76852
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 gtcgcgctcgccgcctgcgc 364 |||||||||||||||||||| Sbjct: 3442186 gtcgcgctcgccgcctgcgc 3442167
>ref|XM_954972.1| Neurospora crassa OR74A hypothetical protein (NCU05805.1) partial mRNA Length = 1584 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 173 ccacaccttcgcctccctcgccgtcgcc 200 ||||||| ||||| |||||||||||||| Sbjct: 1002 ccacaccatcgccgccctcgccgtcgcc 1029
>ref|XM_325659.1| Neurospora crassa OR74A hypothetical protein (NCU05805.1) partial mRNA Length = 1584 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 173 ccacaccttcgcctccctcgccgtcgcc 200 ||||||| ||||| |||||||||||||| Sbjct: 1002 ccacaccatcgccgccctcgccgtcgcc 1029
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cgtcgcgctcgccgcctgcg 363 |||||||||||||||||||| Sbjct: 2829928 cgtcgcgctcgccgcctgcg 2829909
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 gtcgcgctcgccgcctgcgc 364 |||||||||||||||||||| Sbjct: 479915 gtcgcgctcgccgcctgcgc 479896
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 cgccgcgctggtcgctgctg 462 |||||||||||||||||||| Sbjct: 1729627 cgccgcgctggtcgctgctg 1729646
>ref|XM_546704.2| PREDICTED: Canis familiaris similar to low density lipoprotein receptor-related protein 8 (LOC489584), mRNA Length = 3559 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 338 ggccaccgtcgcgctcgccgcctgcgcc 365 |||||||| ||||| ||||||||||||| Sbjct: 1188 ggccaccgccgcgcccgccgcctgcgcc 1215
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gccgccgcaccggcaggccc 61 |||||||||||||||||||| Sbjct: 926282 gccgccgcaccggcaggccc 926263
>gb|AC007346.6| Homo sapiens chromosome 16 clone RP11-467J12, complete sequence Length = 204130 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tcctcctcgcccaccctctc 221 |||||||||||||||||||| Sbjct: 167600 tcctcctcgcccaccctctc 167619
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 ctgcctcttcgccggcgccgcgct 451 |||||||||| ||||||||||||| Sbjct: 2458477 ctgcctcttcaccggcgccgcgct 2458500
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cgtcgcgctcgccgcctgcg 363 |||||||||||||||||||| Sbjct: 1012100 cgtcgcgctcgccgcctgcg 1012081
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 gtcgcgctcgccgcctgcgc 364 |||||||||||||||||||| Sbjct: 289845 gtcgcgctcgccgcctgcgc 289826
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 ctcgccgtcgccgtcctcctcgcc 212 |||||||||||||| ||||||||| Sbjct: 263544 ctcgccgtcgccgtactcctcgcc 263521
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cgccgtcgccgtcctcctcg 210 |||||||||||||||||||| Sbjct: 142585 cgccgtcgccgtcctcctcg 142566
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cgccgtcgccgtcctcctcg 210 |||||||||||||||||||| Sbjct: 83639 cgccgtcgccgtcctcctcg 83658
>emb|AL731614.4|OSJN00260 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079F16, complete sequence Length = 157801 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 384 ccgcgctcgctcgccgagctcctccgcg 411 |||||||||| || |||||||||||||| Sbjct: 35830 ccgcgctcgcgcggcgagctcctccgcg 35803
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gcgctcgccgcctgcgccac 367 |||||||||||||||||||| Sbjct: 166730 gcgctcgccgcctgcgccac 166711
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 gccgccgcaccggcaggccc 61 |||||||||||||||||||| Sbjct: 5175183 gccgccgcaccggcaggccc 5175202
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cgtcgcgctcgccgcctgcg 363 |||||||||||||||||||| Sbjct: 602295 cgtcgcgctcgccgcctgcg 602276
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 384 ccgcgctcgctcgccgagctcctccgcg 411 |||||||||| || |||||||||||||| Sbjct: 11867235 ccgcgctcgcgcggcgagctcctccgcg 11867208
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cgctcgccgagctcctccgc 410 |||||||||||||||||||| Sbjct: 11536955 cgctcgccgagctcctccgc 11536936
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cgccgtcgccgtcctcctcg 210 |||||||||||||||||||| Sbjct: 21592506 cgccgtcgccgtcctcctcg 21592525 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 gctcgccgagctcctccgcg 411 |||||||||||||||||||| Sbjct: 8768850 gctcgccgagctcctccgcg 8768869
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cgccgtcgccgtcctcctcg 210 |||||||||||||||||||| Sbjct: 6791859 cgccgtcgccgtcctcctcg 6791840
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cgctccgcggcgaccggccg 386 |||||||||||||||||||| Sbjct: 7886506 cgctccgcggcgaccggccg 7886525
>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E05 Length = 176935 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cgccgtcgccgtcctcctcg 210 |||||||||||||||||||| Sbjct: 144011 cgccgtcgccgtcctcctcg 143992
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cgccgtcgccgtcctcctcg 210 |||||||||||||||||||| Sbjct: 73920 cgccgtcgccgtcctcctcg 73901
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 344 cgtcgcgctcgccgcctgcgccacgctc 371 |||||||||||||||| |||||||||| Sbjct: 140104 cgtcgcgctcgccgccgccgccacgctc 140131
>dbj|AK109854.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F12, full insert sequence Length = 2122 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 344 cgtcgcgctcgccgcctgcgccacgctc 371 |||||||||||||||| |||||||||| Sbjct: 1738 cgtcgcgctcgccgccgccgccacgctc 1765
>dbj|AK108886.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-D12, full insert sequence Length = 932 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 384 ccgcgctcgctcgccgagctcctccgcg 411 |||||||||| || |||||||||||||| Sbjct: 246 ccgcgctcgcgcggcgagctcctccgcg 273
>dbj|AK102658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101H19, full insert sequence Length = 1756 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 cgccgtcgccgtcctcctcg 210 |||||||||||||||||||| Sbjct: 343 cgccgtcgccgtcctcctcg 362
>gb|AY110052.1| Zea mays CL33106_1 mRNA sequence Length = 1111 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 cgctcgccgagctcctccgc 410 |||||||||||||||||||| Sbjct: 857 cgctcgccgagctcctccgc 876
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 356 cgcctgcgccacgctccgcggcgaccggccgc 387 ||||||||||||||||||| ||| | |||||| Sbjct: 3500637 cgcctgcgccacgctccgctgcggctggccgc 3500606
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 gccggcgccgcgctggtcgc 457 |||||||||||||||||||| Sbjct: 2798474 gccggcgccgcgctggtcgc 2798455
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 cgctcgccgagctcctccgc 410 |||||||||||||||||||| Sbjct: 11616144 cgctcgccgagctcctccgc 11616125 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,854,386 Number of Sequences: 3902068 Number of extensions: 2854386 Number of successful extensions: 88574 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81685 Number of HSP's gapped (non-prelim): 6889 length of query: 479 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 457 effective length of database: 17,147,199,772 effective search space: 7836270295804 effective search space used: 7836270295804 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
