ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet77c12 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X75089.1|TAPETFFE Triticum aestivum petF gene for ferredoxin Length = 2244 Score = 410 bits (207), Expect = e-112 Identities = 247/260 (95%), Gaps = 4/260 (1%) Strand = Plus / Plus Query: 20 ctcctcagccacacctagagcatcttagctccagctag----ccaccaatggccgccgca 75 |||||||||||||||||||||||||||||||| ||||| | | |||||||||||||| Sbjct: 1484 ctcctcagccacacctagagcatcttagctccggctaggtagctagcaatggccgccgca 1543 Query: 76 ctgagcctccgcgcgcccttctccgtgcgcgctgtggcgccaccggcgccccgcgtggcc 135 |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct: 1544 ctgagcctccgcgcgcccttctccctgcgcgccgtggcgccaccggcgccccgcgtggcc 1603 Query: 136 cttgcgcccgcggccctcagcctcgccgccgccaagcaggtgcggagagccaggctccgc 195 || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1604 ctcgcgcccgcggccctcagcctcgccgccgccaagcaggtgcggggagccaggctccgc 1663 Query: 196 gcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtc 255 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1664 gcccaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtc 1723 Query: 256 cccgacgacgtctacatcct 275 ||||| |||||||||||||| Sbjct: 1724 cccgatgacgtctacatcct 1743
>gb|AY103722.1| Zea mays PCO142214 mRNA sequence Length = 938 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Plus Query: 186 caggctccgcgcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtgga 245 |||||| ||||||||||| || ||||| ||||||||| | ||||| ||||| |||||||| Sbjct: 388 caggctgcgcgcgcaggccacctacaacgtgaagctgatcacgccggagggggaggtgga 447 Query: 246 gctggaggtccccgacgacgtctacatcctg 276 |||| |||| ||||||||||| ||||||||| Sbjct: 448 gctgcaggtgcccgacgacgtgtacatcctg 478
>gb|M73828.1|MZEFD5 Maize ferredoxin (Fd) isoprotein mRNA, pFD5 Length = 616 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Plus Query: 186 caggctccgcgcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtgga 245 |||||| ||||||||||| || ||||| |||||||| | ||||| ||||| |||||||| Sbjct: 137 caggctgcgcgcgcaggccacctacaacgtgaagctcatcacgccggagggggaggtgga 196 Query: 246 gctggaggtccccgacgacgtctacatcctg 276 |||| |||| ||||||||||||||||||||| Sbjct: 197 gctgcaggtgcccgacgacgtctacatcctg 227
>gb|M73830.1|MZEFD1P Maize ferredoxin I (Fd) isoprotein mRNA, pFD1' Length = 757 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Plus Query: 186 caggctccgcgcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtgga 245 |||||| ||||||||||| || ||||| ||||||||| | ||||| ||||| |||||||| Sbjct: 229 caggctgcgcgcgcaggccacctacaacgtgaagctgatcacgccggagggggaggtgga 288 Query: 246 gctggaggtccccgacgacgtctacatcctg 276 |||| |||| ||||||||||| ||||||||| Sbjct: 289 gctgcaggtgcccgacgacgtgtacatcctg 319
>gb|M73829.1|MZEFD1 Maize ferredoxin I (Fd) isoprotein mRNA, pFD1 Length = 684 Score = 93.7 bits (47), Expect = 3e-16 Identities = 80/91 (87%) Strand = Plus / Plus Query: 186 caggctccgcgcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtgga 245 |||||| ||||||||||| || ||||| ||||||||| | ||||| ||||| |||||||| Sbjct: 179 caggctgcgcgcgcaggccacctacaacgtgaagctgatcacgccagagggggaggtgga 238 Query: 246 gctggaggtccccgacgacgtctacatcctg 276 |||| |||| ||||||||||| ||||||||| Sbjct: 239 gctgcaggtgcccgacgacgtgtacatcctg 269
>dbj|AB016810.1| Zea mays mRNA for ferredoxin, complete cds Length = 765 Score = 87.7 bits (44), Expect = 2e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 193 cgcgcgcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggag 252 ||||||||||| || ||||| ||||||||| | ||||| ||||| |||||||||||| || Sbjct: 183 cgcgcgcaggccacctacaacgtgaagctgatcacgccggagggggaggtggagctgcag 242 Query: 253 gtccccgacgacgtctacat 272 || ||||||||||||||||| Sbjct: 243 gtgcccgacgacgtctacat 262
>ref|XM_479678.1| Oryza sativa (japonica cultivar-group), mRNA Length = 736 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 208 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 267 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 268 ggacgacgtgtacatcctg 286
>ref|XM_507559.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1300_E01.1 mRNA Length = 737 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 209 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 268 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 269 ggacgacgtgtacatcctg 287
>ref|XM_507558.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1300_E01.1 mRNA Length = 737 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 209 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 268 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 269 ggacgacgtgtacatcctg 287
>ref|XM_507082.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1300_E01.1 mRNA Length = 848 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 210 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 269 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 270 ggacgacgtgtacatcctg 288
>gb|AY072818.1| Oryza sativa anti-disease protein 1 (ADI1) mRNA, complete cds Length = 729 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 185 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 244 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 245 ggacgacgtgtacatcctg 263
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 236073 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 236014 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 236013 ggacgacgtgtacatcctg 235995
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1300_E01 Length = 103022 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 2499 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 2440 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 2439 ggacgacgtgtacatcctg 2421
>dbj|AK120393.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A06, full insert sequence Length = 848 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 210 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 269 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 270 ggacgacgtgtacatcctg 288
>dbj|AK119709.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-E09, full insert sequence Length = 736 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 208 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 267 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 268 ggacgacgtgtacatcctg 286
>dbj|AK119605.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F01, full insert sequence Length = 1944 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 210 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 269 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 270 ggacgacgtgtacatcctg 288
>dbj|AK119206.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-D12, full insert sequence Length = 746 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 218 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 277 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 278 ggacgacgtgtacatcctg 296
>dbj|AK061654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C09, full insert sequence Length = 737 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 209 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 268 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 269 ggacgacgtgtacatcctg 287
>dbj|D30763.1|RICFERR Oryza sativa (japonica cultivar-group) mRNA for ferredoxin, complete cds Length = 755 Score = 77.8 bits (39), Expect = 2e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||||||| |||| || Sbjct: 203 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggagctgcaggtgcc 262 Query: 258 cgacgacgtctacatcctg 276 |||||||| ||||||||| Sbjct: 263 ggacgacgtgtacatcctg 281
>gb|AF010320.1|AF010320 Oryza sativa ferredoxin mRNA, complete cds Length = 849 Score = 54.0 bits (27), Expect = 2e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 198 gcaggcgacgtacaaggtgaagctggtgacgcccgagggcgaggtggagctggaggtccc 257 ||||||||||||||| ||||||||| | || || || ||||||||||| ||| |||| || Sbjct: 203 gcaggcgacgtacaacgtgaagctgatcacaccggacggcgaggtggaactgcaggtgcc 262 Query: 258 cgacgacgtctacatcctg 276 ||| |||| | ||||||| Sbjct: 263 ggacaacgtgttcatcctg 281
>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence Length = 113199 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 140 cgcccgcggccctcagcctcgccgccgcc 168 |||||||||||| |||||||||||||||| Sbjct: 93745 cgcccgcggcccccagcctcgccgccgcc 93773
>gb|AC040930.6| Homo sapiens chromosome 15, clone CTD-2006N8, complete sequence Length = 113031 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Minus Query: 140 cgcccgcggccctcagcctcgccgccgcc 168 |||||||||||| |||||||||||||||| Sbjct: 110803 cgcccgcggcccccagcctcgccgccgcc 110775
>gb|AC158934.4| Mus musculus chromosome 3, clone RP23-218L17, complete sequence Length = 194631 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 42 tcttagctccagctagccacca 63 |||||||||||||||||||||| Sbjct: 12706 tcttagctccagctagccacca 12727
>gb|AE011784.1| Xanthomonas axonopodis pv. citri str. 306, section 162 of 469 of the complete genome Length = 13803 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 189 gctccgcgcgcaggcgacgtac 210 |||||||||||||||||||||| Sbjct: 385 gctccgcgcgcaggcgacgtac 364
>gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, complete sequence Length = 199088 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 42 tcttagctccagctagccacca 63 |||||||||||||||||||||| Sbjct: 122379 tcttagctccagctagccacca 122358
>emb|AL671878.8| Mouse DNA sequence from clone RP23-184D5 on chromosome 4, complete sequence Length = 230395 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 42 tcttagctccagctagccacca 63 |||||||||||||||||||||| Sbjct: 119664 tcttagctccagctagccacca 119643
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 0.91 Identities = 27/29 (93%) Strand = Plus / Plus Query: 226 acgcccgagggcgaggtggagctggaggt 254 |||||| |||||||||||| ||||||||| Sbjct: 652282 acgcccaagggcgaggtggcgctggaggt 652310
>gb|AF206633.1|AF206633 Streptomyces peucetius chitinase C precursor, gene, complete cds; and unknown gene Length = 2699 Score = 42.1 bits (21), Expect = 0.91 Identities = 24/25 (96%) Strand = Plus / Minus Query: 226 acgcccgagggcgaggtggagctgg 250 |||||||||||||||| |||||||| Sbjct: 2527 acgcccgagggcgaggaggagctgg 2503
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 gcgcgcccttctccgtgcgcg 106 ||||||||||||||||||||| Sbjct: 2982867 gcgcgcccttctccgtgcgcg 2982847
>dbj|AK119950.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-C04, full insert sequence Length = 2055 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 tccccgacgacgtctacatcc 274 ||||||||||||||||||||| Sbjct: 370 tccccgacgacgtctacatcc 390
>gb|DQ214545.1| Taeniopygia guttata clone 0063P0007H08 RIKEN cDNA 2900070E19 variant 2-like mRNA, complete sequence Length = 1134 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 ccgcggccctcagcctcgccgccg 166 |||| ||||||||||||||||||| Sbjct: 160 ccgccgccctcagcctcgccgccg 137
>gb|DQ214544.1| Taeniopygia guttata clone 0065P0011C11 RIKEN cDNA 2900070E19 variant 2-like mRNA, complete sequence Length = 1146 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 ccgcggccctcagcctcgccgccg 166 |||| ||||||||||||||||||| Sbjct: 165 ccgccgccctcagcctcgccgccg 142
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ccctcagcctcgccgccgcc 168 |||||||||||||||||||| Sbjct: 158072 ccctcagcctcgccgccgcc 158053
>ref|XM_583646.2| PREDICTED: Bos taurus similar to Apolipoprotein B-100 precursor (Apo B-100) (LOC507092), partial mRNA Length = 2592 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 aggtggagctggaggtcccc 258 |||||||||||||||||||| Sbjct: 224 aggtggagctggaggtcccc 243
>gb|AC116877.18| Mus musculus chromosome 18, clone RP24-429E21, complete sequence Length = 188544 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 atcttagctccagctagcca 60 |||||||||||||||||||| Sbjct: 90375 atcttagctccagctagcca 90356
>ref|XM_657821.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5309.2), mRNA Length = 642 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 233 agggcgaggtggagctggag 252 |||||||||||||||||||| Sbjct: 26 agggcgaggtggagctggag 7
>ref|NM_019287.1| Rattus norvegicus apolipoprotein B (Apob), mRNA Length = 14278 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 aggtggagctggaggtcccc 258 |||||||||||||||||||| Sbjct: 237 aggtggagctggaggtcccc 256
>gb|AY321317.1| Rattus norvegicus Ac1-060 mRNA, complete cds Length = 14278 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 aggtggagctggaggtcccc 258 |||||||||||||||||||| Sbjct: 237 aggtggagctggaggtcccc 256
>gb|AY318958.1| Rattus norvegicus Aa1064 mRNA, complete cds Length = 14278 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 aggtggagctggaggtcccc 258 |||||||||||||||||||| Sbjct: 237 aggtggagctggaggtcccc 256
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 236 gcgaggtggagctggaggtccccgacga 263 |||||||||||||||||| |||| |||| Sbjct: 3068908 gcgaggtggagctggaggacccctacga 3068881
>gb|AC095787.7| Rattus norvegicus 14 BAC CH230-9M3 (Children's Hospital Oakland Research Institute) complete sequence Length = 242500 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 tacaaggtgaagctggtgac 227 |||||||||||||||||||| Sbjct: 99909 tacaaggtgaagctggtgac 99890
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 cctcgccgccgccaagcagg 175 |||||||||||||||||||| Sbjct: 220196 cctcgccgccgccaagcagg 220177
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 3.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 213 ggtgaagctggtgacgcccgagggcgag 240 |||| ||||| ||||||||||||||||| Sbjct: 279070 ggtgcagctgctgacgcccgagggcgag 279043
>gb|AC012236.12| Homo sapiens chromosome 15, clone RP11-16E12, complete sequence Length = 173729 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gccgccgccaagcaggtgcg 179 |||||||||||||||||||| Sbjct: 18283 gccgccgccaagcaggtgcg 18302
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 tgacgcccgagggcgaggtg 243 |||||||||||||||||||| Sbjct: 4372847 tgacgcccgagggcgaggtg 4372828
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ccctcagcctcgccgccgcc 168 |||||||||||||||||||| Sbjct: 18684957 ccctcagcctcgccgccgcc 18684938
>emb|AJ327902.1|HSA327902 Homo sapiens genomic sequence surrounding NotI site, clone NL4-DK13C Length = 664 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gccgccgccaagcaggtgcg 179 |||||||||||||||||||| Sbjct: 4 gccgccgccaagcaggtgcg 23
>gb|BC018174.1| Mus musculus BTB (POZ) domain containing 3, mRNA (cDNA clone MGC:25591 IMAGE:4011475), complete cds Length = 2436 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 catcttagctccagctagcc 59 |||||||||||||||||||| Sbjct: 304 catcttagctccagctagcc 323
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 ccgcggccctcagcctcgcc 162 |||||||||||||||||||| Sbjct: 887836 ccgcggccctcagcctcgcc 887817 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,023,065 Number of Sequences: 3902068 Number of extensions: 2023065 Number of successful extensions: 50172 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49763 Number of HSP's gapped (non-prelim): 408 length of query: 276 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 254 effective length of database: 17,147,199,772 effective search space: 4355388742088 effective search space used: 4355388742088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
