>APE1_AERPE (O73942) Homing endonuclease I-ApeI (EC 3.1.-.-) (rRNA|
           intron-encoded homing endonuclease 1)
          Length = 222

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +1

Query: 43  KLKGIDGRAPPGVEPAA 93
           KLKGI G AP GVEPAA
Sbjct: 206 KLKGIGGGAPQGVEPAA 222

>SLBP2_XENLA (Q9YGP6) Oocyte-specific histone RNA stem-loop-binding protein 2|
          Length = 250

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 102 VKLSRR-LHAWWCPSVNSFKFQPCDHTPPGTQRL 4
           +KL RR LHAW  PS NSF+    DH+   TQRL
Sbjct: 160 IKLWRRDLHAWDPPSQNSFQE---DHSFKQTQRL 190

>MPD2_YEAST (Q99316) Protein disulfide isomerase MPD2 precursor (EC 5.3.4.1)|
          Length = 277

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 136 LCLDLVSFPVLGQIKPQAPRLVVP 65
           LC DL  FP++  +KP+   LV+P
Sbjct: 98  LCTDLPGFPIIELVKPRTKPLVLP 121

>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1470

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 10  LGSGGSMVARLKLKGIDGRAPPGVEPAA*FDPTRGNLPGP 129
           L SG S+   L  +G+D R PPG  P     P   ++PGP
Sbjct: 871 LSSGSSISEVLSAQGVDLRGPPG--PPGPRGPPGPSIPGP 908

>BIN1_HUMAN (O00499) Myc box-dependent-interacting protein 1 (Bridging|
           integrator 1) (Amphiphysin-like protein) (Amphiphysin
           II) (Box-dependent myc-interacting protein 1)
          Length = 593

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 92  AAGSTPGGALPSIPLSFSLATILPPEPK 9
           A G+TPG  LP  P        +PP PK
Sbjct: 319 AGGATPGATLPKSPSQLRKGPPVPPPPK 346

>DPOLZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC 2.7.7.7)|
            (Seizure-related protein 4)
          Length = 3122

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -2

Query: 220  QTNRSTN*ERPCTTTHRIKKELSVCQSLLCLDLVSFPVLGQIKPQAPRLVVPFRQ 56
            Q  +STN  +  T+TH+  K +SV       +  + PV    KP+ PR   P  Q
Sbjct: 1537 QKAQSTNVVQDSTSTHQPDKNISVSNEHKKANKRTRPVTSPRKPRTPRRTKPKEQ 1591

>RL2_CLOPE (Q8XHS6) 50S ribosomal protein L2|
          Length = 277

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 99  KLSRRLHAWWCPSVNSFKFQPCDHTPPG 16
           K  R+ H  W P+V      PCDH   G
Sbjct: 207 KAGRKRHMGWRPTVRGSVMNPCDHPHGG 234

>DYN2_HUMAN (P50570) Dynamin-2 (EC 3.6.5.5)|
          Length = 870

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -1

Query: 200 LRTAMHHHP*NQERALSLSILAMSGPGKFPRVGSN*AAGSTPGGALPSIPLSFSLATILP 21
           L++A  H P  Q R +S    ++  PG+ P V      G TPG  L  +P+  + +   P
Sbjct: 757 LQSASSHSPTPQRRPVS----SIHPPGRPPAV-----RGPTPGPPLIPVPVGAAASFSAP 807

Query: 20  PEP 12
           P P
Sbjct: 808 PIP 810

>SEM3D_CHICK (Q90663) Semaphorin-3D precursor (Collapsin-2) (COLL-2)|
          Length = 761

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 142 SLLCLDLVSFPVLGQIKPQAPRLVVPFRQFL*VSALRPY 26
           SLL L ++ FPV G  K   PRL + ++  L  ++  P+
Sbjct: 11  SLLSLAMLFFPVTGTSKQNIPRLKLSYKDLLLSNSCIPF 49

>IDLC_STRPU (Q26630) 33 kDa inner dynein arm light chain, axonemal (p33)|
          Length = 260

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = -3

Query: 207 PPTKNGHAPPPIESRKSSQ------SVNPCYVWT 124
           PP K G   PP+ES+K+ Q      S+ P   WT
Sbjct: 47  PPPKGGSKLPPVESQKAQQTDEILNSILPPREWT 80

>ELN_RAT (Q99372) Elastin precursor (Tropoelastin)|
          Length = 870

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 18/48 (37%), Positives = 20/48 (41%)
 Frame = -1

Query: 155 LSLSILAMSGPGKFPRVGSN*AAGSTPGGALPSIPLSFSLATILPPEP 12
           L   + A   PGK P VG     G  PGG LP     F    +LP  P
Sbjct: 179 LGAGVGAGGKPGKVPGVG---LPGVYPGGVLPGTGARFPGVGVLPGVP 223


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,939,250
Number of Sequences: 219361
Number of extensions: 849078
Number of successful extensions: 2029
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2028
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)